HEADER OXIDOREDUCTASE 11-JUN-18 6DQX TITLE ACTINOBACILLUS UREAE CLASS ID RIBONUCLEOTIDE REDUCTASE ALPHA SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE, ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 EC: 1.17.4.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOBACILLUS UREAE ATCC 25976; SOURCE 3 ORGANISM_TAXID: 887324; SOURCE 4 GENE: HMPREF0027_1834; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS RIBONUCLEOTIDE REDUCTASE, ALPHA SUBUNIT, CLASS ID, NUCLEOTIDE KEYWDS 2 METABOLISM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.MCBRIDE,G.M.PALOWITCH,A.K.BOAL REVDAT 4 11-OCT-23 6DQX 1 REMARK LINK REVDAT 3 01-JAN-20 6DQX 1 REMARK REVDAT 2 24-APR-19 6DQX 1 JRNL REVDAT 1 17-APR-19 6DQX 0 JRNL AUTH H.R.ROSE,A.O.MAGGIOLO,M.J.MCBRIDE,G.M.PALOWITCH, JRNL AUTH 2 M.E.PANDELIA,K.M.DAVIS,N.H.YENNAWAR,A.K.BOAL JRNL TITL STRUCTURES OF CLASS ID RIBONUCLEOTIDE REDUCTASE CATALYTIC JRNL TITL 2 SUBUNITS REVEAL A MINIMAL ARCHITECTURE FOR DEOXYNUCLEOTIDE JRNL TITL 3 BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 58 1845 2019 JRNL REFN ISSN 1520-4995 JRNL PMID 30855138 JRNL DOI 10.1021/ACS.BIOCHEM.8B01252 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 57504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3122 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3322 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4177 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 259 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.322 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4291 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3880 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5780 ; 1.377 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9024 ; 0.968 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 515 ; 5.605 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;39.043 ;24.354 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 745 ;12.037 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.953 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 615 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4739 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 902 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6DQX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000234777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62864 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6DQW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 4000, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, 0.1 M TRIS BASE PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.99200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.99200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.00250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.99200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.99200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.00250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.99200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.99200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.00250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.99200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.99200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.00250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 391.93600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -195.96800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 TYR A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 LYS A 129 REMARK 465 ASN A 130 REMARK 465 ASN A 131 REMARK 465 GLY A 132 REMARK 465 GLY A 154 REMARK 465 THR A 155 REMARK 465 SER A 156 REMARK 465 ARG A 157 REMARK 465 LYS A 158 REMARK 465 VAL A 420 REMARK 465 LYS A 421 REMARK 465 ASP A 422 REMARK 465 LEU A 423 REMARK 465 ALA A 424 REMARK 465 LYS A 425 REMARK 465 ILE A 426 REMARK 465 LYS A 427 REMARK 465 THR A 428 REMARK 465 VAL A 429 REMARK 465 ALA A 540 REMARK 465 GLN A 541 REMARK 465 VAL A 542 REMARK 465 PHE A 543 REMARK 465 ASN A 544 REMARK 465 ARG A 545 REMARK 465 SER A 552 REMARK 465 CYS A 553 REMARK 465 GLU A 554 REMARK 465 GLY A 555 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER A 551 O SER A 551 2925 1.65 REMARK 500 O HOH A 904 O HOH A 948 2925 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 322 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 179 -10.90 76.67 REMARK 500 SER A 252 -163.85 -100.99 REMARK 500 ASN A 253 -169.79 -103.79 REMARK 500 PHE A 312 -5.53 84.66 REMARK 500 SER A 410 -122.28 37.57 REMARK 500 TYR A 418 105.18 -163.03 REMARK 500 GLN A 498 -133.43 -99.19 REMARK 500 TYR A 531 -114.62 -94.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 197 OD2 REMARK 620 2 HOH A 827 O 82.6 REMARK 620 3 HOH A 915 O 84.0 2.3 REMARK 620 4 HOH A 923 O 82.0 0.7 2.4 REMARK 620 5 HOH A 926 O 83.0 2.6 4.5 3.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 739 O REMARK 620 2 HOH A 805 O 167.6 REMARK 620 3 HOH A 880 O 84.1 86.7 REMARK 620 4 HOH A 931 O 85.5 87.3 96.9 REMARK 620 5 HOH A 938 O 96.1 91.8 87.6 175.3 REMARK 620 6 HOH A 959 O 93.3 96.2 176.2 85.6 89.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 609 DBREF 6DQX A 1 555 UNP E8KJ17 E8KJ17_9PAST 1 554 SEQADV 6DQX MET A -19 UNP E8KJ17 INITIATING METHIONINE SEQADV 6DQX GLY A -18 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX SER A -17 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX SER A -16 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX HIS A -15 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX HIS A -14 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX HIS A -13 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX HIS A -12 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX HIS A -11 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX HIS A -10 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX SER A -9 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX SER A -8 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX GLY A -7 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX LEU A -6 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX VAL A -5 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX PRO A -4 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX ARG A -3 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX GLY A -2 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX SER A -1 UNP E8KJ17 EXPRESSION TAG SEQADV 6DQX HIS A 0 UNP E8KJ17 EXPRESSION TAG SEQRES 1 A 574 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 574 LEU VAL PRO ARG GLY SER HIS MET THR TYR SER ASN THR SEQRES 3 A 574 ARG PRO ASP PHE GLU TRP LEU ASN GLU ASP SER ARG LEU SEQRES 4 A 574 PHE LEU GLN ARG GLY TYR LEU LEU GLU GLY THR THR ALA SEQRES 5 A 574 LEU GLU ARG ILE ARG PHE ILE ALA GLU HIS ALA GLU HIS SEQRES 6 A 574 LYS LEU GLY ILE GLU GLY TYR ALA ASP LYS PHE TYR HIS SEQRES 7 A 574 TYR MET ALA ARG GLY TYR PHE SER LEU SER SER PRO ILE SEQRES 8 A 574 TRP SER ASN PHE GLY LEU ASP ARG GLY LEU PRO ILE SER SEQRES 9 A 574 CYS PHE GLY SER TYR ILE GLY ASP SER ILE HIS GLU ILE SEQRES 10 A 574 MET VAL THR THR ALA GLU VAL GLY MET MET SER LYS ILE SEQRES 11 A 574 GLY GLY GLY THR SER ALA TYR PHE GLY ASP ILE ARG PRO SEQRES 12 A 574 ARG GLY SER ALA ILE LYS ASN ASN GLY LYS SER ASP GLY SEQRES 13 A 574 SER PHE ASN PHE SER LYS LEU PHE ASP THR VAL ILE ASP SEQRES 14 A 574 VAL ILE SER GLN GLY THR SER ARG LYS GLY GLN PHE ALA SEQRES 15 A 574 GLY TYR ILE ASP ILE GLU HIS GLY ASP ILE ASP GLU TRP SEQRES 16 A 574 LEU ASP ILE HIS THR GLU GLY ASN PRO ILE GLN LEU MET SEQRES 17 A 574 TYR TYR GLY VAL CYS VAL GLY HIS ASP TRP LEU GLU SER SEQRES 18 A 574 MET LYS ALA GLY ASP PRO TYR LYS ARG GLN LEU TRP ALA SEQRES 19 A 574 LYS LEU LEU GLN ARG LYS THR GLU THR GLY ILE PRO TYR SEQRES 20 A 574 LEU PHE PHE LYS ASP ASN ALA ASN ALA GLY ARG PRO ASP SEQRES 21 A 574 VAL TYR LYS ASP LYS ASN MET THR VAL HIS ALA SER ASN SEQRES 22 A 574 LEU CYS THR GLU ILE MET LEU PRO SER SER ASN ASP GLU SEQRES 23 A 574 SER PHE VAL CYS CYS LEU SER SER MET ASN LEU LEU TYR SEQRES 24 A 574 PHE ASP GLU TRP LYS ASP THR GLU ALA PRO GLU VAL LEU SEQRES 25 A 574 THR TYR PHE LEU ASP VAL VAL MET SER GLU PHE ILE GLU SEQRES 26 A 574 LYS SER LYS ASP MET PRO PHE LEU ASP ARG ALA HIS ARG SEQRES 27 A 574 PHE ALA THR ARG HIS ARG ALA LEU GLY LEU GLY VAL LEU SEQRES 28 A 574 GLY TRP HIS SER TYR LEU GLN ALA ASN ASN ILE ALA PHE SEQRES 29 A 574 ASP SER PHE GLN ALA MET GLN LYS ASN ASN LEU ILE PHE SEQRES 30 A 574 LYS THR LEU GLN GLU LYS THR LEU LYS ALA SER GLN GLU SEQRES 31 A 574 LEU ALA LYS ARG PHE GLY GLU PRO GLU ILE LEU LYS GLY SEQRES 32 A 574 TYR GLY ARG ARG ASN THR THR LEU MET SER ILE ALA PRO SEQRES 33 A 574 THR LYS SER SER SER PHE ILE LEU GLY SER VAL SER PRO SEQRES 34 A 574 SER VAL GLU PRO PHE LYS SER ASN TYR TYR VAL LYS ASP SEQRES 35 A 574 LEU ALA LYS ILE LYS THR VAL TYR LYS ASN PRO PHE LEU SEQRES 36 A 574 GLU LYS LEU LEU GLN GLU LYS GLY LEU ASP THR GLU GLU SEQRES 37 A 574 ILE TRP GLU SER ILE LEU HIS ASN ASP GLY SER VAL GLN SEQRES 38 A 574 HIS LEU GLU GLN LEU THR ASP GLU GLU LYS GLU VAL PHE SEQRES 39 A 574 LYS THR PHE SER GLU ILE SER GLN LEU SER VAL ILE GLN SEQRES 40 A 574 GLN ALA ALA GLN ARG GLN LYS TYR ILE ASP GLN GLY GLN SEQRES 41 A 574 SER ILE ASN ILE MET VAL HIS PRO ALA THR PRO ALA ARG SEQRES 42 A 574 ASP LEU ASN GLN LEU TYR LEU THR ALA GLU GLU LEU GLY SEQRES 43 A 574 LEU LYS SER ILE TYR TYR GLN TYR SER MET SER ALA ALA SEQRES 44 A 574 GLN VAL PHE ASN ARG ASN LEU LEU SER CYS SER SER CYS SEQRES 45 A 574 GLU GLY HET CL A 601 1 HET CL A 602 1 HET MG A 603 1 HET MG A 604 1 HET EDO A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET EDO A 608 4 HET GOL A 609 6 HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CL 2(CL 1-) FORMUL 4 MG 2(MG 2+) FORMUL 6 EDO 4(C2 H6 O2) FORMUL 10 GOL C3 H8 O3 FORMUL 11 HOH *259(H2 O) HELIX 1 AA1 ASN A 14 TYR A 25 1 12 HELIX 2 AA2 THR A 31 GLY A 48 1 18 HELIX 3 AA3 GLY A 51 GLY A 63 1 13 HELIX 4 AA4 SER A 68 PHE A 75 1 8 HELIX 5 AA5 SER A 93 GLY A 111 1 19 HELIX 6 AA6 ASP A 135 ILE A 151 1 17 HELIX 7 AA7 ASP A 171 LEU A 176 1 6 HELIX 8 AA8 GLY A 195 ALA A 204 1 10 HELIX 9 AA9 ASP A 206 GLY A 224 1 19 HELIX 10 AB1 PHE A 230 GLY A 237 1 8 HELIX 11 AB2 PRO A 239 LYS A 245 1 7 HELIX 12 AB3 TYR A 279 LYS A 284 1 6 HELIX 13 AB4 GLU A 287 LYS A 308 1 22 HELIX 14 AB5 LEU A 313 ARG A 324 1 12 HELIX 15 AB6 GLY A 332 ASN A 340 1 9 HELIX 16 AB7 SER A 346 GLY A 376 1 31 HELIX 17 AB8 PRO A 378 LYS A 382 5 5 HELIX 18 AB9 THR A 397 LEU A 404 1 8 HELIX 19 AC1 ASN A 432 LYS A 442 1 11 HELIX 20 AC2 THR A 446 ASN A 456 1 11 HELIX 21 AC3 THR A 467 PHE A 474 1 8 HELIX 22 AC4 THR A 476 ILE A 480 5 5 HELIX 23 AC5 SER A 481 LYS A 494 1 14 HELIX 24 AC6 PRO A 511 LEU A 525 1 15 SHEET 1 AA1 3 PHE A 65 LEU A 67 0 SHEET 2 AA1 3 LEU A 272 ASN A 276 -1 O SER A 274 N SER A 66 SHEET 3 AA1 3 GLY A 327 LEU A 331 1 O GLY A 329 N SER A 273 SHEET 1 AA2 7 PHE A 268 CYS A 270 0 SHEET 2 AA2 7 CYS A 85 TYR A 89 -1 N GLY A 87 O PHE A 268 SHEET 3 AA2 7 THR A 114 TYR A 117 1 O TYR A 117 N SER A 88 SHEET 4 AA2 7 PHE A 161 ASP A 166 1 O TYR A 164 N ALA A 116 SHEET 5 AA2 7 TYR A 189 CYS A 193 1 O TYR A 189 N PHE A 161 SHEET 6 AA2 7 TYR A 227 PHE A 229 1 O TYR A 227 N VAL A 192 SHEET 7 AA2 7 SER A 529 ILE A 530 -1 O ILE A 530 N LEU A 228 SHEET 1 AA3 2 ILE A 504 MET A 505 0 SHEET 2 AA3 2 GLN A 533 TYR A 534 1 O TYR A 534 N ILE A 504 LINK OD2 ASP A 197 MG MG A 604 1555 6429 2.22 LINK MG MG A 603 O HOH A 739 1555 6429 2.15 LINK MG MG A 603 O HOH A 805 1555 1555 2.08 LINK MG MG A 603 O HOH A 880 1555 1555 1.90 LINK MG MG A 603 O HOH A 931 1555 1555 1.99 LINK MG MG A 603 O HOH A 938 1555 1555 2.03 LINK MG MG A 603 O HOH A 959 1555 6429 1.92 LINK MG MG A 604 O HOH A 827 1555 6529 2.21 LINK MG MG A 604 O HOH A 915 1555 6529 2.01 LINK MG MG A 604 O HOH A 923 1555 1555 1.99 LINK MG MG A 604 O HOH A 926 1555 6529 2.35 CISPEP 1 ILE A 225 PRO A 226 0 7.04 SITE 1 AC1 6 CYS A 85 PHE A 86 THR A 114 SER A 115 SITE 2 AC1 6 ASN A 253 LEU A 254 SITE 1 AC2 3 ASP A 240 VAL A 241 ARG A 386 SITE 1 AC3 4 HOH A 805 HOH A 880 HOH A 931 HOH A 938 SITE 1 AC4 2 HIS A 45 HOH A 923 SITE 1 AC5 5 LYS A 46 ASP A 297 SER A 301 ARG A 324 SITE 2 AC5 5 ARG A 387 SITE 1 AC6 7 ILE A 167 GLU A 168 ILE A 172 TRP A 198 SITE 2 AC6 7 TYR A 208 LEU A 212 HOH A 767 SITE 1 AC7 3 ASP A 92 ARG A 122 HOH A 701 SITE 1 AC8 2 ASP A 173 ASP A 177 SITE 1 AC9 1 ASP A 244 CRYST1 97.984 97.984 132.005 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010206 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007575 0.00000