data_6DR6 # _entry.id 6DR6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.321 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6DR6 WWPDB D_1000235108 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DR6 _pdbx_database_status.recvd_initial_deposition_date 2018-06-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Salveson, P.J.' 1 0000-0003-0962-6010 'Nowick, J.S.' 2 0000-0002-2273-1029 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Am. Chem. Soc.' _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 140 _citation.language ? _citation.page_first 11745 _citation.page_last 11754 _citation.title 'Repurposing Triphenylmethane Dyes to Bind to Trimers Derived from A beta.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.8b06568 _citation.pdbx_database_id_PubMed 30125493 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Salveson, P.J.' 1 0000-0003-0962-6010 primary 'Haerianardakani, S.' 2 0000-0003-1539-2345 primary 'Thuy-Boun, A.' 3 0000-0002-9841-0758 primary 'Yoo, S.' 4 0000-0002-8982-7631 primary 'Kreutzer, A.G.' 5 0000-0002-9724-6298 primary 'Demeler, B.' 6 0000-0002-2414-9518 primary 'Nowick, J.S.' 7 0000-0002-2273-1029 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6DR6 _cell.details ? _cell.formula_units_Z ? _cell.length_a 58.058 _cell.length_a_esd ? _cell.length_b 58.058 _cell.length_b_esd ? _cell.length_c 95.609 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 48 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DR6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ORT-CYS-VAL-PHE-XXX-CYS-GLU-ASP-ORT-ALA-ILE-ILE-GLY-LEU-ORA-VAL 1791.226 4 ? ? ? ? 2 water nat water 18.015 7 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ORN)CVF(H7V)CED(ORN)AIIGL(ORN)V' _entity_poly.pdbx_seq_one_letter_code_can ACVFACEDAAIIGLAV _entity_poly.pdbx_strand_id A,D,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ORN n 1 2 CYS n 1 3 VAL n 1 4 PHE n 1 5 H7V n 1 6 CYS n 1 7 GLU n 1 8 ASP n 1 9 ORN n 1 10 ALA n 1 11 ILE n 1 12 ILE n 1 13 GLY n 1 14 LEU n 1 15 ORN n 1 16 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6DR6 _struct_ref.pdbx_db_accession 6DR6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6DR6 A 1 ? 16 ? 6DR6 1 ? 16 ? 1 16 2 1 6DR6 D 1 ? 16 ? 6DR6 1 ? 16 ? 1 16 3 1 6DR6 B 1 ? 16 ? 6DR6 1 ? 16 ? 1 16 4 1 6DR6 C 1 ? 16 ? 6DR6 1 ? 16 ? 1 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 H7V 'L-peptide linking' n 3-cyclohexyl-N-methyl-L-alanine ? 'C10 H19 N O2' 185.263 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 ORN 'L-peptide linking' n L-ornithine ? 'C5 H12 N2 O2' 132.161 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DR6 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.25 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M tris pH 7.5, ).2 M magnesium chloride, 3.9 M 1,6-hexanediol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 123 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN 92' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-02-09 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6DR6 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.608 _reflns.d_resolution_low 34.645 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5520 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 75.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 57.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.00 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.62 _reflns_shell.d_res_low 2.72 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all 1234 _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.993 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DR6 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.608 _refine.ls_d_res_low 34.645 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5520 _refine.ls_number_reflns_R_free 561 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.00 _refine.ls_percent_reflns_R_free 10.16 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2459 _refine.ls_R_factor_R_free 0.2768 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2421 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 29.20 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.44 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 492 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 7 _refine_hist.number_atoms_total 499 _refine_hist.d_res_high 2.608 _refine_hist.d_res_low 34.645 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? 503 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.283 ? 666 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 31.985 ? 369 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.206 ? 84 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.002 ? 76 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.6079 2.8702 . . 142 1234 100.00 . . . 0.3812 . 0.3189 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8702 3.2853 . . 141 1241 100.00 . . . 0.3154 . 0.2890 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2853 4.1380 . . 138 1237 100.00 . . . 0.3027 . 0.2566 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.1380 34.6479 . . 140 1247 100.00 . . . 0.2310 . 0.2029 . . . . . . . . . . # _struct.entry_id 6DR6 _struct.title 'X-ray crystallographic structure of a covalent trimer derived from A-beta 17_36 containing the F20Cha point mutation' _struct.pdbx_descriptor ORT-CYS-VAL-PHE-XXX-CYS-GLU-ASP-ORT-ALA-ILE-ILE-GLY-LEU-ORA-VAL _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DR6 _struct_keywords.text 'Amyloid, Alzheimers Disease, Abeta, oligomer, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 C CYS 6 SG ? ? A CYS 2 B CYS 6 1_555 ? ? ? ? ? ? ? 2.032 ? disulf2 disulf ? ? A CYS 6 SG ? ? ? 1_555 D CYS 2 SG ? ? A CYS 6 C CYS 2 1_555 ? ? ? ? ? ? ? 2.033 ? disulf3 disulf ? ? C CYS 2 SG ? ? ? 1_555 D CYS 6 SG ? ? B CYS 2 C CYS 6 1_555 ? ? ? ? ? ? ? 2.033 ? disulf4 disulf ? ? B CYS 2 SG ? ? ? 1_555 B CYS 6 SG ? ? D CYS 2 D CYS 6 2_665 ? ? ? ? ? ? ? 2.028 ? covale1 covale both ? A ORN 1 NE ? ? ? 1_555 A VAL 16 C ? ? A ORN 1 A VAL 16 1_555 ? ? ? ? ? ? ? 1.379 ? covale2 covale both ? A ORN 1 C ? ? ? 1_555 A CYS 2 N ? ? A ORN 1 A CYS 2 1_555 ? ? ? ? ? ? ? 1.372 ? covale3 covale one ? A PHE 4 C ? ? ? 1_555 A H7V 5 N ? ? A PHE 4 A H7V 5 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale both ? A H7V 5 C ? ? ? 1_555 A CYS 6 N ? ? A H7V 5 A CYS 6 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale both ? A ASP 8 C ? ? ? 1_555 A ORN 9 NE ? ? A ASP 8 A ORN 9 1_555 ? ? ? ? ? ? ? 1.378 ? covale6 covale both ? A ORN 9 C ? ? ? 1_555 A ALA 10 N ? ? A ORN 9 A ALA 10 1_555 ? ? ? ? ? ? ? 1.373 ? covale7 covale both ? A LEU 14 C ? ? ? 1_555 A ORN 15 N ? ? A LEU 14 A ORN 15 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale both ? A ORN 15 C ? ? ? 1_555 A VAL 16 N ? ? A ORN 15 A VAL 16 1_555 ? ? ? ? ? ? ? 1.327 ? covale9 covale both ? B ORN 1 NE ? ? ? 1_555 B VAL 16 C ? ? D ORN 1 D VAL 16 1_555 ? ? ? ? ? ? ? 1.377 ? covale10 covale both ? B ORN 1 C ? ? ? 1_555 B CYS 2 N ? ? D ORN 1 D CYS 2 1_555 ? ? ? ? ? ? ? 1.373 ? covale11 covale one ? B PHE 4 C ? ? ? 1_555 B H7V 5 N ? ? D PHE 4 D H7V 5 1_555 ? ? ? ? ? ? ? 1.333 ? covale12 covale both ? B H7V 5 C ? ? ? 1_555 B CYS 6 N ? ? D H7V 5 D CYS 6 1_555 ? ? ? ? ? ? ? 1.329 ? covale13 covale both ? B ASP 8 C ? ? ? 1_555 B ORN 9 NE ? ? D ASP 8 D ORN 9 1_555 ? ? ? ? ? ? ? 1.377 ? covale14 covale both ? B ORN 9 C ? ? ? 1_555 B ALA 10 N ? ? D ORN 9 D ALA 10 1_555 ? ? ? ? ? ? ? 1.375 ? covale15 covale both ? B LEU 14 C ? ? ? 1_555 B ORN 15 N ? ? D LEU 14 D ORN 15 1_555 ? ? ? ? ? ? ? 1.332 ? covale16 covale both ? B ORN 15 C ? ? ? 1_555 B VAL 16 N ? ? D ORN 15 D VAL 16 1_555 ? ? ? ? ? ? ? 1.328 ? covale17 covale both ? C ORN 1 NE ? ? ? 1_555 C VAL 16 C ? ? B ORN 1 B VAL 16 1_555 ? ? ? ? ? ? ? 1.378 ? covale18 covale both ? C ORN 1 C ? ? ? 1_555 C CYS 2 N ? ? B ORN 1 B CYS 2 1_555 ? ? ? ? ? ? ? 1.371 ? covale19 covale one ? C PHE 4 C ? ? ? 1_555 C H7V 5 N ? ? B PHE 4 B H7V 5 1_555 ? ? ? ? ? ? ? 1.335 ? covale20 covale both ? C H7V 5 C ? ? ? 1_555 C CYS 6 N ? ? B H7V 5 B CYS 6 1_555 ? ? ? ? ? ? ? 1.330 ? covale21 covale both ? C ASP 8 C ? ? ? 1_555 C ORN 9 NE ? ? B ASP 8 B ORN 9 1_555 ? ? ? ? ? ? ? 1.377 ? covale22 covale both ? C ORN 9 C ? ? ? 1_555 C ALA 10 N ? ? B ORN 9 B ALA 10 1_555 ? ? ? ? ? ? ? 1.373 ? covale23 covale both ? C LEU 14 C ? ? ? 1_555 C ORN 15 N ? ? B LEU 14 B ORN 15 1_555 ? ? ? ? ? ? ? 1.329 ? covale24 covale both ? C ORN 15 C ? ? ? 1_555 C VAL 16 N ? ? B ORN 15 B VAL 16 1_555 ? ? ? ? ? ? ? 1.325 ? covale25 covale both ? D ORN 1 NE ? ? ? 1_555 D VAL 16 C ? ? C ORN 1 C VAL 16 1_555 ? ? ? ? ? ? ? 1.377 ? covale26 covale both ? D ORN 1 C ? ? ? 1_555 D CYS 2 N ? ? C ORN 1 C CYS 2 1_555 ? ? ? ? ? ? ? 1.373 ? covale27 covale one ? D PHE 4 C ? ? ? 1_555 D H7V 5 N ? ? C PHE 4 C H7V 5 1_555 ? ? ? ? ? ? ? 1.334 ? covale28 covale both ? D H7V 5 C ? ? ? 1_555 D CYS 6 N ? ? C H7V 5 C CYS 6 1_555 ? ? ? ? ? ? ? 1.327 ? covale29 covale both ? D ASP 8 C ? ? ? 1_555 D ORN 9 NE ? ? C ASP 8 C ORN 9 1_555 ? ? ? ? ? ? ? 1.378 ? covale30 covale both ? D ORN 9 C ? ? ? 1_555 D ALA 10 N ? ? C ORN 9 C ALA 10 1_555 ? ? ? ? ? ? ? 1.373 ? covale31 covale both ? D LEU 14 C ? ? ? 1_555 D ORN 15 N ? ? C LEU 14 C ORN 15 1_555 ? ? ? ? ? ? ? 1.331 ? covale32 covale both ? D ORN 15 C ? ? ? 1_555 D VAL 16 N ? ? C ORN 15 C VAL 16 1_555 ? ? ? ? ? ? ? 1.326 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 4 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 11 ? VAL A 16 ? ILE A 11 VAL A 16 AA1 2 CYS A 2 ? GLU A 7 ? CYS A 2 GLU A 7 AA1 3 CYS C 2 ? GLU C 7 ? CYS B 2 GLU B 7 AA1 4 ILE C 11 ? VAL C 16 ? ILE B 11 VAL B 16 AA2 1 ILE A 11 ? VAL A 16 ? ILE A 11 VAL A 16 AA2 2 CYS A 2 ? GLU A 7 ? CYS A 2 GLU A 7 AA2 3 CYS D 2 ? GLU D 7 ? CYS C 2 GLU C 7 AA2 4 ILE D 11 ? VAL D 16 ? ILE C 11 VAL C 16 AA3 1 ILE C 11 ? VAL C 16 ? ILE B 11 VAL B 16 AA3 2 CYS C 2 ? GLU C 7 ? CYS B 2 GLU B 7 AA3 3 CYS D 2 ? GLU D 7 ? CYS C 2 GLU C 7 AA3 4 ILE D 11 ? VAL D 16 ? ILE C 11 VAL C 16 AA4 1 VAL B 3 ? GLU B 7 ? VAL D 3 GLU D 7 AA4 2 ILE B 11 ? ORN B 15 ? ILE D 11 ORN D 15 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE A 12 ? O ILE A 12 N CYS A 6 ? N CYS A 6 AA1 2 3 N VAL A 3 ? N VAL A 3 O H7V C 5 ? O H7V B 5 AA1 3 4 N PHE C 4 ? N PHE B 4 O LEU C 14 ? O LEU B 14 AA2 1 2 O ILE A 12 ? O ILE A 12 N CYS A 6 ? N CYS A 6 AA2 2 3 N H7V A 5 ? N H7V A 5 O VAL D 3 ? O VAL C 3 AA2 3 4 N CYS D 6 ? N CYS C 6 O ILE D 12 ? O ILE C 12 AA3 1 2 O LEU C 14 ? O LEU B 14 N PHE C 4 ? N PHE B 4 AA3 2 3 N VAL C 3 ? N VAL B 3 O H7V D 5 ? O H7V C 5 AA3 3 4 N CYS D 6 ? N CYS C 6 O ILE D 12 ? O ILE C 12 AA4 1 2 N CYS B 6 ? N CYS D 6 O ILE B 12 ? O ILE D 12 # _atom_sites.entry_id 6DR6 _atom_sites.fract_transf_matrix[1][1] 0.017224 _atom_sites.fract_transf_matrix[1][2] 0.009944 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019889 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010459 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ORN 1 1 1 ORN ORT A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 H7V 5 5 5 H7V XXX A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 ORN 9 9 9 ORN ORT A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ORN 15 15 15 ORN ORA A . n A 1 16 VAL 16 16 16 VAL VAL A . n B 1 1 ORN 1 1 1 ORN ORT D . n B 1 2 CYS 2 2 2 CYS CYS D . n B 1 3 VAL 3 3 3 VAL VAL D . n B 1 4 PHE 4 4 4 PHE PHE D . n B 1 5 H7V 5 5 5 H7V XXX D . n B 1 6 CYS 6 6 6 CYS CYS D . n B 1 7 GLU 7 7 7 GLU GLU D . n B 1 8 ASP 8 8 8 ASP ASP D . n B 1 9 ORN 9 9 9 ORN ORT D . n B 1 10 ALA 10 10 10 ALA ALA D . n B 1 11 ILE 11 11 11 ILE ILE D . n B 1 12 ILE 12 12 12 ILE ILE D . n B 1 13 GLY 13 13 13 GLY GLY D . n B 1 14 LEU 14 14 14 LEU LEU D . n B 1 15 ORN 15 15 15 ORN ORA D . n B 1 16 VAL 16 16 16 VAL VAL D . n C 1 1 ORN 1 1 1 ORN ORT B . n C 1 2 CYS 2 2 2 CYS CYS B . n C 1 3 VAL 3 3 3 VAL VAL B . n C 1 4 PHE 4 4 4 PHE PHE B . n C 1 5 H7V 5 5 5 H7V XXX B . n C 1 6 CYS 6 6 6 CYS CYS B . n C 1 7 GLU 7 7 7 GLU GLU B . n C 1 8 ASP 8 8 8 ASP ASP B . n C 1 9 ORN 9 9 9 ORN ORT B . n C 1 10 ALA 10 10 10 ALA ALA B . n C 1 11 ILE 11 11 11 ILE ILE B . n C 1 12 ILE 12 12 12 ILE ILE B . n C 1 13 GLY 13 13 13 GLY GLY B . n C 1 14 LEU 14 14 14 LEU LEU B . n C 1 15 ORN 15 15 15 ORN ORA B . n C 1 16 VAL 16 16 16 VAL VAL B . n D 1 1 ORN 1 1 1 ORN ORT C . n D 1 2 CYS 2 2 2 CYS CYS C . n D 1 3 VAL 3 3 3 VAL VAL C . n D 1 4 PHE 4 4 4 PHE PHE C . n D 1 5 H7V 5 5 5 H7V XXX C . n D 1 6 CYS 6 6 6 CYS CYS C . n D 1 7 GLU 7 7 7 GLU GLU C . n D 1 8 ASP 8 8 8 ASP ASP C . n D 1 9 ORN 9 9 9 ORN ORT C . n D 1 10 ALA 10 10 10 ALA ALA C . n D 1 11 ILE 11 11 11 ILE ILE C . n D 1 12 ILE 12 12 12 ILE ILE C . n D 1 13 GLY 13 13 13 GLY GLY C . n D 1 14 LEU 14 14 14 LEU LEU C . n D 1 15 ORN 15 15 15 ORN ORA C . n D 1 16 VAL 16 16 16 VAL VAL C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 101 7 HOH HOH D . F 2 HOH 1 101 8 HOH HOH B . F 2 HOH 2 102 4 HOH HOH B . F 2 HOH 3 103 6 HOH HOH B . G 2 HOH 1 101 3 HOH HOH C . G 2 HOH 2 102 5 HOH HOH C . G 2 HOH 3 103 2 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA hexameric 6 2 software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,4 A,C,D,F,G 2 1,2,3,5,6,7 B,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3600 ? 1 MORE -37 ? 1 'SSA (A^2)' 6310 ? 2 'ABSA (A^2)' 3750 ? 2 MORE -43 ? 2 'SSA (A^2)' 6020 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 29.0290000000 0.8660254038 -0.5000000000 0.0000000000 50.2797028929 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -29.0290000000 -0.8660254038 -0.5000000000 0.0000000000 50.2797028929 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 7_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 95.6090000000 5 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5000000000 -0.8660254038 0.0000000000 29.0290000000 -0.8660254038 -0.5000000000 0.0000000000 50.2797028929 0.0000000000 0.0000000000 -1.0000000000 47.8045000000 6 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 47.8045000000 7 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/2 0.5000000000 0.8660254038 0.0000000000 -29.0290000000 0.8660254038 -0.5000000000 0.0000000000 50.2797028929 0.0000000000 0.0000000000 -1.0000000000 47.8045000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-10-17 2 'Structure model' 2 0 2020-01-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Polymer sequence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' entity_poly 3 2 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.type' 2 2 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 3 2 'Structure model' '_pdbx_audit_support.funding_organization' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 3.6778 20.1117 41.3767 0.5436 0.6089 0.7014 0.0260 0.1000 -0.0512 5.4587 5.5174 2.0652 -0.5376 1.0799 -1.0899 -0.3024 0.5970 -0.6766 0.3505 -0.1926 0.2339 0.3289 0.7588 0.5239 'X-RAY DIFFRACTION' 2 ? refined 6.1073 28.3756 52.6788 0.3430 0.6832 0.4100 0.0584 -0.0780 0.0865 2.5061 4.6567 1.3967 0.8291 -0.0033 0.1137 -0.0359 -1.0527 -0.2948 0.1062 -0.2024 -0.2985 -0.2570 -0.1579 0.2266 'X-RAY DIFFRACTION' 3 ? refined 13.7091 29.9323 40.9557 0.5049 0.6961 0.7204 0.0785 0.0457 -0.0447 5.9713 9.6260 4.3891 1.1456 -0.1143 -0.9320 0.0036 0.6267 -0.1396 -0.0675 0.1153 -0.5320 0.4301 0.2419 -0.0335 'X-RAY DIFFRACTION' 4 ? refined -1.8332 25.4727 29.9952 0.8368 0.8100 0.4889 -0.1088 0.1019 -0.0758 4.8999 3.2044 3.5510 2.3742 -3.7234 -3.0092 0.2781 -0.1771 -0.0435 -0.9652 -0.7601 -0.5318 0.3844 0.4984 0.3424 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 16 ? ? ? ;chain 'A' and (resid 1 through 16 ) ; 'X-RAY DIFFRACTION' 2 2 B 1 ? ? B 16 ? ? ? ;chain 'B' and (resid 1 through 16 ) ; 'X-RAY DIFFRACTION' 3 3 C 1 ? ? C 16 ? ? ? ;chain 'C' and (resid 1 through 16 ) ; 'X-RAY DIFFRACTION' 4 4 D 1 ? ? D 16 ? ? ? ;chain 'D' and (resid 1 through 16 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.12_2829: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD2 C ASP 8 ? ? O C HOH 101 ? ? 2.00 2 1 OD1 D ASP 8 ? ? O D HOH 101 ? ? 2.01 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A ORN 15 ? ? N A VAL 16 ? ? CA A VAL 16 ? ? 137.66 121.70 15.96 2.50 Y 2 1 C C ORN 15 ? ? N C VAL 16 ? ? CA C VAL 16 ? ? 137.39 121.70 15.69 2.50 Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 10 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -172.54 _pdbx_validate_torsion.psi 112.33 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 097562 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #