HEADER LYASE 14-JUN-18 6DSQ TITLE RE-REFINEMENT OF P. FALCIPARUM OROTIDINE 5'-MONOPHOSPHATE TITLE 2 DECARBOXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.1.23; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 GENE: OMPDC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, P FALCIPARUM, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR G.S.BRANDT,W.R.P.NOVAK REVDAT 2 11-OCT-23 6DSQ 1 REMARK REVDAT 1 17-OCT-18 6DSQ 0 JRNL AUTH W.R.P.NOVAK,K.H.J.WEST,L.M.D.KIRKMAN,G.S.BRANDT JRNL TITL RE-REFINEMENT OF PLASMODIUM FALCIPARUM OROTIDINE JRNL TITL 2 5'-MONOPHOSPHATE DECARBOXYLASE PROVIDES A CLEARER PICTURE OF JRNL TITL 3 AN IMPORTANT MALARIAL DRUG TARGET. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 74 664 2018 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 30279319 JRNL DOI 10.1107/S2053230X18010610 REMARK 0 REMARK 0 THIS ENTRY 6DSQ REFLECTS AN ALTERNATIVE MODELING OF THE ORIGINAL REMARK 0 DATA IN 2ZA2 DETERMINED BY AUTHOR: TOKUOKA, K., INOUE, T. REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 2ZA2 REMARK 0 AUTH K.TOKUOKA,Y.KUSAKARI,S.R.KRUNGKRAI,H.MATSUMURA,Y.KAI, REMARK 0 AUTH 2 J.KRUNGKRAI,T.HORII,T.INOUE REMARK 0 TITL STRUCTURAL BASIS FOR THE DECARBOXYLATION OF OROTIDINE REMARK 0 TITL 2 5'-MONOPHOSPHATE (OMP) BY PLASMODIUM FALCIPARUM OMP REMARK 0 TITL 3 DECARBOXYLASE. REMARK 0 REF J. BIOCHEM. V. 143 69 2008 REMARK 0 REFN ISSN 0021-924X REMARK 0 PMID 17981823 REMARK 0 DOI 10.1093/JB/MVM193 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3221 - 6.3405 0.98 1251 139 0.1695 0.2009 REMARK 3 2 6.3405 - 5.0360 0.99 1264 136 0.1919 0.2314 REMARK 3 3 5.0360 - 4.4004 0.99 1255 142 0.1561 0.1816 REMARK 3 4 4.4004 - 3.9985 1.00 1260 140 0.1610 0.2499 REMARK 3 5 3.9985 - 3.7121 1.00 1286 143 0.1809 0.2208 REMARK 3 6 3.7121 - 3.4934 0.99 1266 141 0.2096 0.2882 REMARK 3 7 3.4934 - 3.3185 1.00 1267 136 0.2165 0.2748 REMARK 3 8 3.3185 - 3.1741 1.00 1246 138 0.2259 0.3009 REMARK 3 9 3.1741 - 3.0520 1.00 1291 144 0.2226 0.3063 REMARK 3 10 3.0520 - 2.9467 1.00 1253 139 0.2314 0.2898 REMARK 3 11 2.9467 - 2.8546 1.00 1284 141 0.2413 0.3249 REMARK 3 12 2.8546 - 2.7730 1.00 1260 140 0.2611 0.3670 REMARK 3 13 2.7730 - 2.7000 1.00 1303 144 0.2910 0.3563 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5085 REMARK 3 ANGLE : 0.971 6874 REMARK 3 CHIRALITY : 0.055 750 REMARK 3 PLANARITY : 0.007 883 REMARK 3 DIHEDRAL : 4.404 3048 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1 THROUGH 45 OR REMARK 3 (RESID 46 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 47 REMARK 3 THROUGH 50 OR (RESID 51 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 52 THROUGH 265 OR (RESID 272 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 273 THROUGH 293 OR REMARK 3 (RESID 294 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 CD )) OR RESID 295 THROUGH 319 OR (RESID REMARK 3 320 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )))) REMARK 3 SELECTION : (CHAIN B AND ((RESID 1 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 2 THROUGH 208 OR (RESID 209 REMARK 3 THROUGH 210 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 211 THROUGH 265 OR RESID 272 THROUGH 320)) REMARK 3 ATOM PAIRS NUMBER : 2842 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DSQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000235190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18313 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3N3M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 3000, PH 9.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 100.90600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 58.25811 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 14.67533 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 100.90600 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 58.25811 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 14.67533 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 100.90600 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 58.25811 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.67533 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 116.51621 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 29.35067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 116.51621 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 29.35067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 116.51621 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 29.35067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 68 REMARK 465 ASN A 69 REMARK 465 ILE A 70 REMARK 465 ILE A 71 REMARK 465 ARG A 72 REMARK 465 GLU A 73 REMARK 465 GLY A 267 REMARK 465 ALA A 268 REMARK 465 GLN A 269 REMARK 465 ASN A 270 REMARK 465 GLY A 271 REMARK 465 MET A 321 REMARK 465 GLU A 322 REMARK 465 SER A 323 REMARK 465 ASP B 68 REMARK 465 ASN B 69 REMARK 465 ILE B 70 REMARK 465 ILE B 71 REMARK 465 ARG B 72 REMARK 465 GLU B 73 REMARK 465 ILE B 266 REMARK 465 GLY B 267 REMARK 465 ALA B 268 REMARK 465 GLN B 269 REMARK 465 ASN B 270 REMARK 465 MET B 321 REMARK 465 GLU B 322 REMARK 465 SER B 323 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 9 CD CE NZ REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 ASN A 39 CG OD1 ND2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 ILE A 201 CG1 CG2 CD1 REMARK 470 ASP A 209 CG OD1 OD2 REMARK 470 ASN A 210 CG OD1 ND2 REMARK 470 TYR A 255 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ASN A 314 CG OD1 ND2 REMARK 470 LYS A 318 CG CD CE NZ REMARK 470 GLN A 319 CG CD OE1 NE2 REMARK 470 LYS B 9 CD CE NZ REMARK 470 LYS B 34 CG CD CE NZ REMARK 470 ASN B 39 CG OD1 ND2 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 LYS B 184 CG CD CE NZ REMARK 470 ILE B 201 CG1 CG2 CD1 REMARK 470 TYR B 255 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 272 CG OD1 OD2 REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 LYS B 283 CG CD CE NZ REMARK 470 ARG B 294 NE CZ NH1 NH2 REMARK 470 LYS B 304 CG CD CE NZ REMARK 470 ASN B 314 CG OD1 ND2 REMARK 470 LYS B 318 CG CD CE NZ REMARK 470 GLN B 319 CG CD OE1 NE2 REMARK 470 ASN B 320 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 193 OE1 GLU B 248 1.62 REMARK 500 OH TYR B 178 O HOH B 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 231 CG GLU A 231 CD 0.177 REMARK 500 GLU A 231 CD GLU A 231 OE2 0.091 REMARK 500 CYS B 259 CB CYS B 259 SG -0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 231 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 CYS B 259 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 15 65.50 39.55 REMARK 500 TYR A 41 42.88 38.74 REMARK 500 ASN A 210 -9.01 74.70 REMARK 500 GLN A 319 31.10 -84.06 REMARK 500 VAL B 192 -65.15 -108.63 REMARK 500 ASN B 210 -3.92 77.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZA2 RELATED DB: PDB REMARK 900 THIS ENTRY 6DSQ REFLECTS AN ALTERNATIVE MODELING OF X-RAY DATA IN REMARK 900 ENTRY 2ZA2 DBREF 6DSQ A 1 323 UNP Q8T6J6 Q8T6J6_PLAFA 1 323 DBREF 6DSQ B 1 323 UNP Q8T6J6 Q8T6J6_PLAFA 1 323 SEQRES 1 A 323 MET GLY PHE LYS VAL LYS LEU GLU LYS ARG ARG ASN ALA SEQRES 2 A 323 ILE ASN THR CYS LEU CYS ILE GLY LEU ASP PRO ASP GLU SEQRES 3 A 323 LYS ASP ILE GLU ASN PHE MET LYS ASN GLU LYS GLU ASN SEQRES 4 A 323 ASN TYR ASN ASN ILE LYS LYS ASN LEU LYS GLU LYS TYR SEQRES 5 A 323 ILE ASN ASN VAL SER ILE LYS LYS ASP ILE LEU LEU LYS SEQRES 6 A 323 ALA PRO ASP ASN ILE ILE ARG GLU GLU LYS SER GLU GLU SEQRES 7 A 323 PHE PHE TYR PHE PHE ASN HIS PHE CYS PHE TYR ILE ILE SEQRES 8 A 323 ASN GLU THR ASN LYS TYR ALA LEU THR PHE LYS MET ASN SEQRES 9 A 323 PHE ALA PHE TYR ILE PRO TYR GLY SER VAL GLY ILE ASP SEQRES 10 A 323 VAL LEU LYS ASN VAL PHE ASP TYR LEU TYR GLU LEU ASN SEQRES 11 A 323 ILE PRO THR ILE LEU ASP MET LYS ILE ASN ASP ILE GLY SEQRES 12 A 323 ASN THR VAL LYS ASN TYR ARG LYS PHE ILE PHE GLU TYR SEQRES 13 A 323 LEU LYS SER ASP SER CYS THR VAL ASN ILE TYR MET GLY SEQRES 14 A 323 THR ASN MET LEU LYS ASP ILE CYS TYR ASP GLU GLU LYS SEQRES 15 A 323 ASN LYS TYR TYR SER ALA PHE VAL LEU VAL LYS THR THR SEQRES 16 A 323 ASN PRO ASP SER ALA ILE PHE GLN LYS ASN LEU SER LEU SEQRES 17 A 323 ASP ASN LYS GLN ALA TYR VAL ILE MET ALA GLN GLU ALA SEQRES 18 A 323 LEU ASN MET SER SER TYR LEU ASN LEU GLU GLN ASN ASN SEQRES 19 A 323 GLU PHE ILE GLY PHE VAL VAL GLY ALA ASN SER TYR ASP SEQRES 20 A 323 GLU MET ASN TYR ILE ARG THR TYR PHE PRO ASN CYS TYR SEQRES 21 A 323 ILE LEU SER PRO GLY ILE GLY ALA GLN ASN GLY ASP LEU SEQRES 22 A 323 HIS LYS THR LEU THR ASN GLY TYR HIS LYS SER TYR GLU SEQRES 23 A 323 LYS ILE LEU ILE ASN ILE GLY ARG ALA ILE THR LYS ASN SEQRES 24 A 323 PRO TYR PRO GLN LYS ALA ALA GLN MET TYR TYR ASP GLN SEQRES 25 A 323 ILE ASN ALA ILE LEU LYS GLN ASN MET GLU SER SEQRES 1 B 323 MET GLY PHE LYS VAL LYS LEU GLU LYS ARG ARG ASN ALA SEQRES 2 B 323 ILE ASN THR CYS LEU CYS ILE GLY LEU ASP PRO ASP GLU SEQRES 3 B 323 LYS ASP ILE GLU ASN PHE MET LYS ASN GLU LYS GLU ASN SEQRES 4 B 323 ASN TYR ASN ASN ILE LYS LYS ASN LEU LYS GLU LYS TYR SEQRES 5 B 323 ILE ASN ASN VAL SER ILE LYS LYS ASP ILE LEU LEU LYS SEQRES 6 B 323 ALA PRO ASP ASN ILE ILE ARG GLU GLU LYS SER GLU GLU SEQRES 7 B 323 PHE PHE TYR PHE PHE ASN HIS PHE CYS PHE TYR ILE ILE SEQRES 8 B 323 ASN GLU THR ASN LYS TYR ALA LEU THR PHE LYS MET ASN SEQRES 9 B 323 PHE ALA PHE TYR ILE PRO TYR GLY SER VAL GLY ILE ASP SEQRES 10 B 323 VAL LEU LYS ASN VAL PHE ASP TYR LEU TYR GLU LEU ASN SEQRES 11 B 323 ILE PRO THR ILE LEU ASP MET LYS ILE ASN ASP ILE GLY SEQRES 12 B 323 ASN THR VAL LYS ASN TYR ARG LYS PHE ILE PHE GLU TYR SEQRES 13 B 323 LEU LYS SER ASP SER CYS THR VAL ASN ILE TYR MET GLY SEQRES 14 B 323 THR ASN MET LEU LYS ASP ILE CYS TYR ASP GLU GLU LYS SEQRES 15 B 323 ASN LYS TYR TYR SER ALA PHE VAL LEU VAL LYS THR THR SEQRES 16 B 323 ASN PRO ASP SER ALA ILE PHE GLN LYS ASN LEU SER LEU SEQRES 17 B 323 ASP ASN LYS GLN ALA TYR VAL ILE MET ALA GLN GLU ALA SEQRES 18 B 323 LEU ASN MET SER SER TYR LEU ASN LEU GLU GLN ASN ASN SEQRES 19 B 323 GLU PHE ILE GLY PHE VAL VAL GLY ALA ASN SER TYR ASP SEQRES 20 B 323 GLU MET ASN TYR ILE ARG THR TYR PHE PRO ASN CYS TYR SEQRES 21 B 323 ILE LEU SER PRO GLY ILE GLY ALA GLN ASN GLY ASP LEU SEQRES 22 B 323 HIS LYS THR LEU THR ASN GLY TYR HIS LYS SER TYR GLU SEQRES 23 B 323 LYS ILE LEU ILE ASN ILE GLY ARG ALA ILE THR LYS ASN SEQRES 24 B 323 PRO TYR PRO GLN LYS ALA ALA GLN MET TYR TYR ASP GLN SEQRES 25 B 323 ILE ASN ALA ILE LEU LYS GLN ASN MET GLU SER FORMUL 3 HOH *33(H2 O) HELIX 1 AA1 GLY A 2 ASN A 15 1 14 HELIX 2 AA2 ASP A 25 ASN A 39 1 15 HELIX 3 AA3 TYR A 41 LEU A 48 1 8 HELIX 4 AA4 LYS A 49 VAL A 56 5 8 HELIX 5 AA5 LYS A 59 LEU A 64 1 6 HELIX 6 AA6 GLU A 74 SER A 76 5 3 HELIX 7 AA7 GLU A 77 ASN A 95 1 19 HELIX 8 AA8 LYS A 96 ALA A 98 5 3 HELIX 9 AA9 ALA A 106 TYR A 108 5 3 HELIX 10 AB1 GLY A 112 LEU A 129 1 18 HELIX 11 AB2 ILE A 142 GLU A 155 1 14 HELIX 12 AB3 ASN A 171 CYS A 177 1 7 HELIX 13 AB4 ASN A 196 ASP A 198 5 3 HELIX 14 AB5 SER A 199 LYS A 204 1 6 HELIX 15 AB6 ALA A 213 ASN A 229 1 17 HELIX 16 AB7 LEU A 230 ASN A 234 5 5 HELIX 17 AB8 SER A 245 PHE A 256 1 12 HELIX 18 AB9 LEU A 273 TYR A 281 1 9 HELIX 19 AC1 SER A 284 GLU A 286 5 3 HELIX 20 AC2 GLY A 293 LYS A 298 1 6 HELIX 21 AC3 TYR A 301 GLN A 319 1 19 HELIX 22 AC4 GLY B 2 ASN B 15 1 14 HELIX 23 AC5 ASP B 25 ASN B 39 1 15 HELIX 24 AC6 TYR B 41 LEU B 48 1 8 HELIX 25 AC7 GLU B 50 VAL B 56 5 7 HELIX 26 AC8 LYS B 59 LEU B 64 1 6 HELIX 27 AC9 GLU B 77 ASN B 95 1 19 HELIX 28 AD1 LYS B 96 ALA B 98 5 3 HELIX 29 AD2 ALA B 106 TYR B 108 5 3 HELIX 30 AD3 GLY B 112 LEU B 129 1 18 HELIX 31 AD4 ILE B 142 GLU B 155 1 14 HELIX 32 AD5 ILE B 166 THR B 170 5 5 HELIX 33 AD6 ASN B 171 CYS B 177 1 7 HELIX 34 AD7 SER B 199 LYS B 204 1 6 HELIX 35 AD8 ALA B 213 ASN B 229 1 17 HELIX 36 AD9 LEU B 230 ASN B 234 5 5 HELIX 37 AE1 SER B 245 PHE B 256 1 12 HELIX 38 AE2 ASP B 272 TYR B 281 1 10 HELIX 39 AE3 SER B 284 GLU B 286 5 3 HELIX 40 AE4 GLY B 293 LYS B 298 1 6 HELIX 41 AE5 TYR B 301 GLN B 319 1 19 SHEET 1 AA1 9 LEU A 18 LEU A 22 0 SHEET 2 AA1 9 THR A 100 ASN A 104 1 O THR A 100 N ILE A 20 SHEET 3 AA1 9 THR A 133 ILE A 139 1 O ASP A 136 N MET A 103 SHEET 4 AA1 9 SER A 161 VAL A 164 1 O SER A 161 N LEU A 135 SHEET 5 AA1 9 SER A 187 LYS A 193 1 O PHE A 189 N VAL A 164 SHEET 6 AA1 9 ILE A 237 VAL A 241 1 O GLY A 238 N ALA A 188 SHEET 7 AA1 9 ILE A 261 SER A 263 1 O LEU A 262 N PHE A 239 SHEET 8 AA1 9 ILE A 288 ILE A 292 1 O LEU A 289 N SER A 263 SHEET 9 AA1 9 LEU A 18 LEU A 22 1 N CYS A 19 O ILE A 290 SHEET 1 AA2 2 TYR A 178 ASP A 179 0 SHEET 2 AA2 2 LYS A 184 TYR A 185 -1 O LYS A 184 N ASP A 179 SHEET 1 AA3 2 SER A 207 LEU A 208 0 SHEET 2 AA3 2 LYS A 211 GLN A 212 -1 O LYS A 211 N LEU A 208 SHEET 1 AA4 9 LEU B 18 LEU B 22 0 SHEET 2 AA4 9 THR B 100 ASN B 104 1 O LYS B 102 N ILE B 20 SHEET 3 AA4 9 THR B 133 ILE B 139 1 O ASP B 136 N MET B 103 SHEET 4 AA4 9 CYS B 162 VAL B 164 1 O THR B 163 N ILE B 139 SHEET 5 AA4 9 ALA B 188 LYS B 193 1 O PHE B 189 N CYS B 162 SHEET 6 AA4 9 ILE B 237 VAL B 241 1 O GLY B 238 N ALA B 188 SHEET 7 AA4 9 ILE B 261 SER B 263 1 O LEU B 262 N PHE B 239 SHEET 8 AA4 9 ILE B 288 ILE B 292 1 O LEU B 289 N SER B 263 SHEET 9 AA4 9 LEU B 18 LEU B 22 1 N CYS B 19 O ILE B 290 SHEET 1 AA5 2 TYR B 178 ASP B 179 0 SHEET 2 AA5 2 LYS B 184 TYR B 185 -1 O LYS B 184 N ASP B 179 SHEET 1 AA6 2 SER B 207 LEU B 208 0 SHEET 2 AA6 2 LYS B 211 GLN B 212 -1 O LYS B 211 N LEU B 208 CRYST1 201.812 201.812 44.026 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004955 0.002861 0.000000 0.00000 SCALE2 0.000000 0.005722 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022714 0.00000