HEADER TRANSFERASE/DNA 14-JUN-18 6DSX TITLE BST DNA POLYMERASE I POST-CHEMISTRY (N+1 WITH DATP SOAK) STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*A)-3'); COMPND 3 CHAIN: P; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3'); COMPND 7 CHAIN: T; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA POLYMERASE I; COMPND 11 CHAIN: A; COMPND 12 EC: 2.7.7.7; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 11 ORGANISM_TAXID: 1422; SOURCE 12 GENE: POLA; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA SYNTHESIS, TRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.CHIM,L.N.JACKSON,J.C.CHAPUT REVDAT 3 11-OCT-23 6DSX 1 REMARK REVDAT 2 27-NOV-19 6DSX 1 REMARK REVDAT 1 31-OCT-18 6DSX 0 JRNL AUTH N.CHIM,L.N.JACKSON,A.M.TRINH,J.C.CHAPUT JRNL TITL CRYSTAL STRUCTURES OF DNA POLYMERASE I CAPTURE NOVEL JRNL TITL 2 INTERMEDIATES IN THE DNA SYNTHESIS PATHWAY. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 30338759 JRNL DOI 10.7554/ELIFE.40444 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 59677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.340 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8009 - 4.7946 1.00 4369 148 0.1841 0.2085 REMARK 3 2 4.7946 - 3.8062 1.00 4181 142 0.1522 0.1588 REMARK 3 3 3.8062 - 3.3252 1.00 4168 143 0.1703 0.2142 REMARK 3 4 3.3252 - 3.0212 1.00 4149 141 0.1977 0.2148 REMARK 3 5 3.0212 - 2.8047 1.00 4099 143 0.2106 0.2641 REMARK 3 6 2.8047 - 2.6394 1.00 4092 150 0.2044 0.3016 REMARK 3 7 2.6394 - 2.5072 1.00 4124 125 0.1944 0.2376 REMARK 3 8 2.5072 - 2.3981 1.00 4075 152 0.1899 0.2233 REMARK 3 9 2.3981 - 2.3058 1.00 4102 134 0.1846 0.2304 REMARK 3 10 2.3058 - 2.2262 1.00 4075 155 0.1807 0.2336 REMARK 3 11 2.2262 - 2.1566 1.00 4073 129 0.1826 0.2181 REMARK 3 12 2.1566 - 2.0949 1.00 4064 142 0.2023 0.2374 REMARK 3 13 2.0949 - 2.0398 1.00 4050 150 0.2155 0.2948 REMARK 3 14 2.0398 - 1.9900 1.00 4064 138 0.2454 0.2998 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5313 REMARK 3 ANGLE : 0.834 7289 REMARK 3 CHIRALITY : 0.053 814 REMARK 3 PLANARITY : 0.005 857 REMARK 3 DIHEDRAL : 9.206 3150 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 0 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5237 30.0059 33.4229 REMARK 3 T TENSOR REMARK 3 T11: 0.7745 T22: 0.6545 REMARK 3 T33: 0.4537 T12: 0.0804 REMARK 3 T13: -0.0976 T23: -0.0886 REMARK 3 L TENSOR REMARK 3 L11: 5.8198 L22: 9.4461 REMARK 3 L33: 4.7280 L12: -1.7776 REMARK 3 L13: -2.5968 L23: 6.1832 REMARK 3 S TENSOR REMARK 3 S11: 0.2463 S12: 0.8690 S13: -0.4351 REMARK 3 S21: 0.6808 S22: -0.6638 S23: 0.7467 REMARK 3 S31: 0.7123 S32: -0.3516 S33: 0.3937 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'T' AND (RESID 4 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1561 28.3287 32.8216 REMARK 3 T TENSOR REMARK 3 T11: 1.1027 T22: 0.5360 REMARK 3 T33: 0.4200 T12: 0.1241 REMARK 3 T13: -0.0609 T23: -0.0918 REMARK 3 L TENSOR REMARK 3 L11: 8.5424 L22: 6.6328 REMARK 3 L33: 1.3270 L12: -0.1773 REMARK 3 L13: 2.1230 L23: -1.3064 REMARK 3 S TENSOR REMARK 3 S11: -0.1848 S12: -0.1973 S13: -0.5222 REMARK 3 S21: 1.2335 S22: 0.2377 S23: 0.1350 REMARK 3 S31: 1.6276 S32: -0.0293 S33: 0.1233 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 347 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1970 25.8507 -1.0911 REMARK 3 T TENSOR REMARK 3 T11: 0.3025 T22: 0.1920 REMARK 3 T33: 0.1711 T12: -0.0271 REMARK 3 T13: 0.0507 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 4.1728 L22: 3.1380 REMARK 3 L33: 4.0097 L12: 1.4087 REMARK 3 L13: 1.0737 L23: 1.3454 REMARK 3 S TENSOR REMARK 3 S11: -0.1829 S12: 0.5155 S13: -0.2592 REMARK 3 S21: -0.6555 S22: 0.1931 S23: -0.0607 REMARK 3 S31: 0.0893 S32: -0.0543 S33: -0.0217 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 348 THROUGH 467 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2242 26.1685 8.5246 REMARK 3 T TENSOR REMARK 3 T11: 0.1266 T22: 0.1602 REMARK 3 T33: 0.1362 T12: -0.0080 REMARK 3 T13: -0.0115 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.4127 L22: 2.3236 REMARK 3 L33: 2.0431 L12: 0.9645 REMARK 3 L13: -0.4077 L23: -0.0258 REMARK 3 S TENSOR REMARK 3 S11: -0.0329 S12: 0.1255 S13: -0.0716 REMARK 3 S21: -0.1492 S22: 0.0234 S23: 0.0031 REMARK 3 S31: 0.1141 S32: -0.0010 S33: -0.0034 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 468 THROUGH 522 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0060 43.8604 25.3271 REMARK 3 T TENSOR REMARK 3 T11: 0.2205 T22: 0.2141 REMARK 3 T33: 0.2055 T12: 0.0056 REMARK 3 T13: -0.0163 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.0898 L22: 1.5621 REMARK 3 L33: 2.2481 L12: 0.0245 REMARK 3 L13: 0.4726 L23: -0.3885 REMARK 3 S TENSOR REMARK 3 S11: -0.1046 S12: 0.1508 S13: 0.2910 REMARK 3 S21: 0.1993 S22: -0.0603 S23: -0.2537 REMARK 3 S31: -0.2275 S32: 0.4749 S33: 0.2007 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 523 THROUGH 604 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5109 37.1989 40.1038 REMARK 3 T TENSOR REMARK 3 T11: 0.5238 T22: 0.3580 REMARK 3 T33: 0.3351 T12: 0.0169 REMARK 3 T13: -0.0774 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.2038 L22: 2.4528 REMARK 3 L33: 6.6240 L12: -1.1612 REMARK 3 L13: 2.6310 L23: -1.2757 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: 0.0111 S13: 0.0487 REMARK 3 S21: 0.6625 S22: 0.1135 S23: -0.2999 REMARK 3 S31: 0.4646 S32: 0.3804 S33: -0.0414 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 605 THROUGH 676 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5667 47.3565 30.7450 REMARK 3 T TENSOR REMARK 3 T11: 0.2239 T22: 0.2215 REMARK 3 T33: 0.2021 T12: -0.0141 REMARK 3 T13: -0.0547 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.7060 L22: 1.3451 REMARK 3 L33: 1.7095 L12: -0.0898 REMARK 3 L13: -1.1684 L23: 0.2377 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: -0.1489 S13: 0.0491 REMARK 3 S21: 0.1006 S22: -0.0064 S23: -0.1727 REMARK 3 S31: -0.1043 S32: 0.1930 S33: 0.0256 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 677 THROUGH 743 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3417 44.6582 53.2261 REMARK 3 T TENSOR REMARK 3 T11: 0.2592 T22: 0.2430 REMARK 3 T33: 0.2079 T12: -0.0018 REMARK 3 T13: -0.0587 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 6.6850 L22: 4.9576 REMARK 3 L33: 5.1479 L12: -0.8024 REMARK 3 L13: 2.0649 L23: -1.3456 REMARK 3 S TENSOR REMARK 3 S11: 0.2049 S12: -0.0720 S13: -0.4256 REMARK 3 S21: 0.3985 S22: -0.1304 S23: -0.2696 REMARK 3 S31: 0.1818 S32: 0.0583 S33: -0.0460 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 744 THROUGH 876 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5705 43.6496 30.2753 REMARK 3 T TENSOR REMARK 3 T11: 0.1515 T22: 0.1781 REMARK 3 T33: 0.1648 T12: -0.0147 REMARK 3 T13: -0.0012 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 1.2177 L22: 2.1041 REMARK 3 L33: 1.6041 L12: 0.5658 REMARK 3 L13: -0.3293 L23: -0.7847 REMARK 3 S TENSOR REMARK 3 S11: 0.0836 S12: -0.0511 S13: 0.0314 REMARK 3 S21: 0.1592 S22: -0.0545 S23: 0.0392 REMARK 3 S31: -0.0942 S32: -0.1077 S33: -0.0178 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DSX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000234748. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOXDS REMARK 200 DATA SCALING SOFTWARE : AUTOXDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59689 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 46.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.71900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1L3U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% AMMONIUM SULFATE, 0.1M MES, 2% REMARK 280 MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.55800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.68500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.78800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.68500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.55800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.78800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, T, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 298 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 312 43.05 -109.41 REMARK 500 ASP A 402 93.05 -163.04 REMARK 500 ALA A 421 40.97 -88.38 REMARK 500 LEU A 610 -51.13 -125.81 REMARK 500 ILE A 628 -26.58 -150.66 REMARK 500 HIS A 829 -56.45 69.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 908 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 909 DBREF 6DSX P 0 10 PDB 6DSX 6DSX 0 10 DBREF 6DSX T 4 16 PDB 6DSX 6DSX 4 16 DBREF 6DSX A 297 876 UNP E1C9K5 E1C9K5_GEOSE 1 580 SEQADV 6DSX THR A 550 UNP E1C9K5 SER 254 CONFLICT SEQRES 1 P 11 DG DC DG DA DT DC DA DC DG DT DA SEQRES 1 T 13 DG DT DA DC DG DT DG DA DT DC DG DC DA SEQRES 1 A 580 ALA LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU SEQRES 2 A 580 GLU MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL SEQRES 3 A 580 VAL GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE SEQRES 4 A 580 ALA VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO SEQRES 5 A 580 GLU THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU SEQRES 6 A 580 GLY ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS SEQRES 7 A 580 ARG ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU SEQRES 8 A 580 CYS GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU SEQRES 9 A 580 LEU ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA SEQRES 10 A 580 ALA LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU SEQRES 11 A 580 ALA VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP SEQRES 12 A 580 GLU PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA SEQRES 13 A 580 ALA ILE TRP ALA LEU GLU ARG PRO PHE LEU ASP GLU LEU SEQRES 14 A 580 ARG ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU SEQRES 15 A 580 GLN PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA SEQRES 16 A 580 GLY VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY SEQRES 17 A 580 GLU GLU LEU ALA GLU GLN LEU ARG THR VAL GLU GLN ARG SEQRES 18 A 580 ILE TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER SEQRES 19 A 580 PRO LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN SEQRES 20 A 580 LEU PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SEQRES 21 A 580 SER ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU SEQRES 22 A 580 ILE VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS SEQRES 23 A 580 LEU GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL SEQRES 24 A 580 ARG PRO ASP THR LYS LYS VAL HIS THR ILE PHE ASN GLN SEQRES 25 A 580 ALA LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO SEQRES 26 A 580 ASN LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG SEQRES 27 A 580 LYS ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP SEQRES 28 A 580 LEU ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG SEQRES 29 A 580 VAL LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU SEQRES 30 A 580 ALA PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA SEQRES 31 A 580 MET ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO SEQRES 32 A 580 ASN MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY ILE SEQRES 33 A 580 VAL TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU SEQRES 34 A 580 ASN ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG SEQRES 35 A 580 TYR PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU SEQRES 36 A 580 ASN ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR SEQRES 37 A 580 THR LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SEQRES 38 A 580 SER ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET SEQRES 39 A 580 ALA MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE SEQRES 40 A 580 ILE LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS SEQRES 41 A 580 GLU GLU ARG LEU GLN ALA ARG LEU LEU LEU GLN VAL HIS SEQRES 42 A 580 ASP GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU SEQRES 43 A 580 ARG LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA SEQRES 44 A 580 VAL THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR SEQRES 45 A 580 GLY SER THR TRP TYR ASP ALA LYS HET SO4 A 901 5 HET SO4 A 902 5 HET SO4 A 903 5 HET SO4 A 904 5 HET SO4 A 905 5 HET SO4 A 906 5 HET SO4 A 907 5 HET SO4 A 908 5 HET MG A 909 1 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION FORMUL 4 SO4 8(O4 S 2-) FORMUL 12 MG MG 2+ FORMUL 13 HOH *277(H2 O) HELIX 1 AA1 THR A 308 LEU A 312 5 5 HELIX 2 AA2 ARG A 347 LEU A 352 1 6 HELIX 3 AA3 ASP A 354 ASP A 363 1 10 HELIX 4 AA4 ASP A 372 LYS A 383 1 12 HELIX 5 AA5 LEU A 394 ASP A 402 1 9 HELIX 6 AA6 PRO A 403 GLY A 406 5 4 HELIX 7 AA7 ASP A 409 MET A 416 1 8 HELIX 8 AA8 PRO A 424 GLY A 430 1 7 HELIX 9 AA9 LYS A 431 ARG A 435 5 5 HELIX 10 AB1 ASP A 439 ASN A 468 1 30 HELIX 11 AB2 GLN A 470 LEU A 477 1 8 HELIX 12 AB3 LEU A 477 GLY A 492 1 16 HELIX 13 AB4 ASP A 496 GLY A 523 1 28 HELIX 14 AB5 SER A 530 GLU A 540 1 11 HELIX 15 AB6 SER A 557 ALA A 565 1 9 HELIX 16 AB7 PRO A 566 HIS A 568 5 3 HELIX 17 AB8 GLU A 569 TYR A 587 1 19 HELIX 18 AB9 ILE A 588 VAL A 595 1 8 HELIX 19 AC1 LEU A 630 LYS A 635 1 6 HELIX 20 AC2 ILE A 636 GLN A 638 5 3 HELIX 21 AC3 GLN A 656 GLU A 667 1 12 HELIX 22 AC4 ASP A 668 ARG A 677 1 10 HELIX 23 AC5 ASP A 680 GLN A 691 1 12 HELIX 24 AC6 SER A 693 VAL A 697 5 5 HELIX 25 AC7 THR A 698 GLY A 715 1 18 HELIX 26 AC8 SER A 717 ASN A 726 1 10 HELIX 27 AC9 SER A 728 PHE A 743 1 16 HELIX 28 AD1 PHE A 743 GLY A 761 1 19 HELIX 29 AD2 PRO A 774 SER A 778 5 5 HELIX 30 AD3 ASN A 780 GLU A 818 1 39 HELIX 31 AD4 GLU A 840 GLN A 854 1 15 SHEET 1 AA1 6 THR A 302 ALA A 304 0 SHEET 2 AA1 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 AA1 6 GLY A 334 ASN A 339 -1 N ILE A 335 O LEU A 346 SHEET 4 AA1 6 LYS A 315 GLU A 321 -1 N ALA A 317 O VAL A 338 SHEET 5 AA1 6 LYS A 367 MET A 370 1 O SER A 369 N LEU A 318 SHEET 6 AA1 6 VAL A 390 ASP A 393 1 O PHE A 392 N MET A 370 SHEET 1 AA2 3 LYS A 601 VAL A 602 0 SHEET 2 AA2 3 VAL A 493 VAL A 495 -1 N VAL A 493 O VAL A 602 SHEET 3 AA2 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 AA3 2 ILE A 605 ASN A 607 0 SHEET 2 AA3 2 SER A 617 THR A 619 -1 O SER A 617 N ASN A 607 SHEET 1 AA4 4 ARG A 823 GLN A 827 0 SHEET 2 AA4 4 GLU A 831 PRO A 837 -1 O ILE A 833 N LEU A 825 SHEET 3 AA4 4 TRP A 647 TYR A 654 -1 N PHE A 650 O LEU A 834 SHEET 4 AA4 4 VAL A 864 GLY A 869 -1 O HIS A 867 N ALA A 651 SHEET 1 AA5 2 TYR A 762 THR A 764 0 SHEET 2 AA5 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 LINK OD2 ASP A 830 MG MG A 909 1555 1555 2.71 CISPEP 1 GLU A 620 PRO A 621 0 1.80 SITE 1 AC1 3 SER A 655 GLN A 656 MG A 909 SITE 1 AC2 3 GLU A 476 HOH A1056 HOH A1124 SITE 1 AC3 4 ARG A 306 THR A 308 GLU A 309 HOH A1060 SITE 1 AC4 3 ALA A 313 ASP A 314 HIS A 341 SITE 1 AC5 4 ARG A 423 PRO A 424 ALA A 427 HOH A1002 SITE 1 AC6 4 HIS A 682 ARG A 702 LYS A 706 HOH A1108 SITE 1 AC7 3 HIS A 568 ARG A 779 ARG A 819 SITE 1 AC8 4 ARG A 343 ARG A 677 MET A 687 HOH A1008 SITE 1 AC9 4 ASP A 653 TYR A 654 ASP A 830 SO4 A 901 CRYST1 87.116 93.576 105.370 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011479 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010687 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009490 0.00000