HEADER DNA BINDING PROTEIN 15-JUN-18 6DT4 TITLE 1.8 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF CAMP-REGULATORY PROTEIN TITLE 2 FROM YERSINIA PESTIS IN COMPLEX WITH CAMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC AMP RECEPTOR PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CAMP-REGULATORY PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS CO92; SOURCE 3 ORGANISM_TAXID: 214092; SOURCE 4 STRAIN: CO92; SOURCE 5 GENE: CRP, Y3956, YP_0174; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, DNA-BINDING, CAMP, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,J.T.H.RITZERT,W.F.ANDERSON, AUTHOR 2 K.J.F.SATCHELL,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 3 11-OCT-23 6DT4 1 REMARK REVDAT 2 27-JAN-21 6DT4 1 JRNL REVDAT 1 27-JUN-18 6DT4 0 JRNL AUTH J.T.RITZERT,G.MINASOV,R.EMBRY,M.J.SCHIPMA,K.J.F.SATCHELL JRNL TITL THE CYCLIC AMP RECEPTOR PROTEIN REGULATES QUORUM SENSING AND JRNL TITL 2 GLOBAL GENE EXPRESSION IN YERSINIA PESTIS DURING PLANKTONIC JRNL TITL 3 GROWTH AND GROWTH IN BIOFILMS. JRNL REF MBIO V. 10 2019 JRNL REFN ESSN 2150-7511 JRNL PMID 31744922 JRNL DOI 10.1128/MBIO.02613-19 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 42181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2168 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2977 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3181 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 292 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.31000 REMARK 3 B22 (A**2) : 3.41000 REMARK 3 B33 (A**2) : -1.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.858 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3467 ; 0.008 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 3176 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4708 ; 1.334 ; 1.673 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7478 ; 0.439 ; 1.642 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 438 ; 3.986 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;28.591 ;23.128 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 660 ;10.502 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.577 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 459 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3912 ; 0.043 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 606 ; 0.040 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1698 ; 1.872 ; 2.553 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1697 ; 1.873 ; 2.551 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2148 ; 2.928 ; 3.810 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2149 ; 2.928 ; 3.812 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1769 ; 2.830 ; 2.944 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1770 ; 2.829 ; 2.943 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2559 ; 4.510 ; 4.261 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3940 ; 6.792 ;30.713 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3865 ; 6.698 ;30.025 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2669 2.8532 28.3444 REMARK 3 T TENSOR REMARK 3 T11: 0.0939 T22: 0.0840 REMARK 3 T33: 0.0514 T12: -0.0036 REMARK 3 T13: 0.0102 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.0733 L22: 1.2336 REMARK 3 L33: 1.9764 L12: 0.1864 REMARK 3 L13: -0.0120 L23: 0.1279 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: -0.0871 S13: 0.0954 REMARK 3 S21: 0.0634 S22: -0.0147 S23: 0.1000 REMARK 3 S31: 0.0299 S32: -0.0932 S33: -0.0213 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 137 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4580 -11.1385 9.7849 REMARK 3 T TENSOR REMARK 3 T11: 0.4593 T22: 0.1845 REMARK 3 T33: 0.1604 T12: 0.0310 REMARK 3 T13: -0.1303 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 6.6263 L22: 4.5061 REMARK 3 L33: 2.5048 L12: 3.4435 REMARK 3 L13: -3.3130 L23: -0.8787 REMARK 3 S TENSOR REMARK 3 S11: 0.0703 S12: -0.6826 S13: -0.4750 REMARK 3 S21: 0.4511 S22: -0.1306 S23: -0.0853 REMARK 3 S31: 0.5566 S32: 0.4474 S33: 0.0603 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 162 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7095 -11.2222 4.2398 REMARK 3 T TENSOR REMARK 3 T11: 0.2735 T22: 0.1226 REMARK 3 T33: 0.1034 T12: -0.1305 REMARK 3 T13: 0.0163 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 5.6237 L22: 6.0668 REMARK 3 L33: 6.1116 L12: -0.3782 REMARK 3 L13: -1.2268 L23: 1.4082 REMARK 3 S TENSOR REMARK 3 S11: -0.1075 S12: -0.2077 S13: -0.7230 REMARK 3 S21: 0.3748 S22: -0.1271 S23: 0.2694 REMARK 3 S31: 0.9663 S32: -0.4831 S33: 0.2346 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 105 REMARK 3 ORIGIN FOR THE GROUP (A): 34.0501 3.9703 23.7906 REMARK 3 T TENSOR REMARK 3 T11: 0.0150 T22: 0.0937 REMARK 3 T33: 0.0703 T12: 0.0079 REMARK 3 T13: 0.0166 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 4.6472 L22: 1.5258 REMARK 3 L33: 1.9331 L12: 0.3408 REMARK 3 L13: -0.2082 L23: -0.0582 REMARK 3 S TENSOR REMARK 3 S11: -0.1411 S12: 0.1559 S13: -0.2377 REMARK 3 S21: -0.0487 S22: 0.1228 S23: -0.2143 REMARK 3 S31: 0.0440 S32: 0.3515 S33: 0.0183 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 106 B 140 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5415 7.4718 23.4785 REMARK 3 T TENSOR REMARK 3 T11: 0.0824 T22: 0.0724 REMARK 3 T33: 0.0608 T12: 0.0038 REMARK 3 T13: 0.0163 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.6232 L22: 0.5300 REMARK 3 L33: 5.9784 L12: 0.2999 REMARK 3 L13: 1.6322 L23: 0.4521 REMARK 3 S TENSOR REMARK 3 S11: -0.0661 S12: -0.0961 S13: 0.0356 REMARK 3 S21: -0.0445 S22: 0.0371 S23: -0.0544 REMARK 3 S31: -0.1394 S32: 0.0873 S33: 0.0290 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 141 B 208 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7809 18.2979 -1.6452 REMARK 3 T TENSOR REMARK 3 T11: 0.3306 T22: 0.0985 REMARK 3 T33: 0.0353 T12: -0.1349 REMARK 3 T13: 0.0513 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 2.5611 L22: 4.3827 REMARK 3 L33: 3.2598 L12: 0.6943 REMARK 3 L13: 0.0895 L23: 0.4395 REMARK 3 S TENSOR REMARK 3 S11: -0.0936 S12: -0.0599 S13: 0.0332 REMARK 3 S21: -0.1764 S22: 0.0885 S23: -0.1551 REMARK 3 S31: -0.7240 S32: 0.1642 S33: 0.0052 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6DT4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000235200. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : C(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44393 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 30.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.72200 REMARK 200 R SYM FOR SHELL (I) : 0.72200 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: PDB ENTRY 3RYP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6.6 MG/ML PROTEIN, 0.5 M SODIUM REMARK 280 CHLORIDE, 0.01 M TRIS-HCL, PH 8.3, 1 MM CAMP AGAINST PACT (H12) REMARK 280 (0.2 M SODIUM MALONATE, 0.1 M BIS-TRIS PROPANE, PH 8.5, 20% W/V REMARK 280 PEG3350), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.93800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.17500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.17500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.93800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 LYS A 5 REMARK 465 THR A 209 REMARK 465 ARG A 210 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 PRO B 6 REMARK 465 GLN B 7 REMARK 465 THR B 8 REMARK 465 THR B 209 REMARK 465 ARG B 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -13.64 86.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 565 DISTANCE = 5.97 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMP B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP97063 RELATED DB: TARGETTRACK DBREF1 6DT4 A 1 210 UNP A0A0H2W086_YERPE DBREF2 6DT4 A A0A0H2W086 1 210 DBREF1 6DT4 B 1 210 UNP A0A0H2W086_YERPE DBREF2 6DT4 B A0A0H2W086 1 210 SEQADV 6DT4 SER A -2 UNP A0A0H2W08 EXPRESSION TAG SEQADV 6DT4 ASN A -1 UNP A0A0H2W08 EXPRESSION TAG SEQADV 6DT4 ALA A 0 UNP A0A0H2W08 EXPRESSION TAG SEQADV 6DT4 SER B -2 UNP A0A0H2W08 EXPRESSION TAG SEQADV 6DT4 ASN B -1 UNP A0A0H2W08 EXPRESSION TAG SEQADV 6DT4 ALA B 0 UNP A0A0H2W08 EXPRESSION TAG SEQRES 1 A 213 SER ASN ALA MET VAL LEU GLY LYS PRO GLN THR ASP PRO SEQRES 2 A 213 THR LEU GLU TRP PHE LEU SER HIS CYS HIS ILE HIS LYS SEQRES 3 A 213 TYR PRO SER LYS SER THR LEU ILE HIS GLN GLY GLU LYS SEQRES 4 A 213 ALA GLU THR LEU TYR TYR ILE VAL LYS GLY SER VAL ALA SEQRES 5 A 213 VAL LEU ILE LYS ASP GLU GLU GLY LYS GLU MET ILE LEU SEQRES 6 A 213 SER TYR LEU ASN GLN GLY ASP PHE ILE GLY GLU LEU GLY SEQRES 7 A 213 LEU PHE GLU GLU GLY GLN GLU ARG SER ALA TRP VAL ARG SEQRES 8 A 213 ALA LYS THR ALA CYS GLU VAL ALA GLU ILE SER TYR LYS SEQRES 9 A 213 LYS PHE ARG GLN LEU ILE GLN VAL ASN PRO ASP ILE LEU SEQRES 10 A 213 MET ARG LEU SER SER GLN MET ALA ASN ARG LEU GLN ILE SEQRES 11 A 213 THR SER GLU LYS VAL GLY ASN LEU ALA PHE LEU ASP VAL SEQRES 12 A 213 THR GLY ARG ILE ALA GLN THR LEU LEU ASN LEU ALA LYS SEQRES 13 A 213 GLN PRO ASP ALA MET THR HIS PRO ASP GLY MET GLN ILE SEQRES 14 A 213 LYS ILE THR ARG GLN GLU ILE GLY GLN ILE VAL GLY CYS SEQRES 15 A 213 SER ARG GLU THR VAL GLY ARG ILE LEU LYS MET LEU GLU SEQRES 16 A 213 ASP GLN ASN LEU ILE SER ALA HIS GLY LYS THR ILE VAL SEQRES 17 A 213 VAL TYR GLY THR ARG SEQRES 1 B 213 SER ASN ALA MET VAL LEU GLY LYS PRO GLN THR ASP PRO SEQRES 2 B 213 THR LEU GLU TRP PHE LEU SER HIS CYS HIS ILE HIS LYS SEQRES 3 B 213 TYR PRO SER LYS SER THR LEU ILE HIS GLN GLY GLU LYS SEQRES 4 B 213 ALA GLU THR LEU TYR TYR ILE VAL LYS GLY SER VAL ALA SEQRES 5 B 213 VAL LEU ILE LYS ASP GLU GLU GLY LYS GLU MET ILE LEU SEQRES 6 B 213 SER TYR LEU ASN GLN GLY ASP PHE ILE GLY GLU LEU GLY SEQRES 7 B 213 LEU PHE GLU GLU GLY GLN GLU ARG SER ALA TRP VAL ARG SEQRES 8 B 213 ALA LYS THR ALA CYS GLU VAL ALA GLU ILE SER TYR LYS SEQRES 9 B 213 LYS PHE ARG GLN LEU ILE GLN VAL ASN PRO ASP ILE LEU SEQRES 10 B 213 MET ARG LEU SER SER GLN MET ALA ASN ARG LEU GLN ILE SEQRES 11 B 213 THR SER GLU LYS VAL GLY ASN LEU ALA PHE LEU ASP VAL SEQRES 12 B 213 THR GLY ARG ILE ALA GLN THR LEU LEU ASN LEU ALA LYS SEQRES 13 B 213 GLN PRO ASP ALA MET THR HIS PRO ASP GLY MET GLN ILE SEQRES 14 B 213 LYS ILE THR ARG GLN GLU ILE GLY GLN ILE VAL GLY CYS SEQRES 15 B 213 SER ARG GLU THR VAL GLY ARG ILE LEU LYS MET LEU GLU SEQRES 16 B 213 ASP GLN ASN LEU ILE SER ALA HIS GLY LYS THR ILE VAL SEQRES 17 B 213 VAL TYR GLY THR ARG HET CMP A 301 22 HET CL A 302 1 HET CL A 303 2 HET CL A 304 2 HET CMP B 301 22 HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETNAM CL CHLORIDE ION HETSYN CMP CYCLIC AMP; CAMP FORMUL 3 CMP 2(C10 H12 N5 O6 P) FORMUL 4 CL 3(CL 1-) FORMUL 8 HOH *292(H2 O) HELIX 1 AA1 ASP A 9 SER A 17 1 9 HELIX 2 AA2 TYR A 100 ASN A 110 1 11 HELIX 3 AA3 PRO A 111 LEU A 138 1 28 HELIX 4 AA4 ASP A 139 ALA A 152 1 14 HELIX 5 AA5 THR A 169 GLY A 178 1 10 HELIX 6 AA6 SER A 180 GLN A 194 1 15 HELIX 7 AA7 PRO B 10 SER B 17 1 8 HELIX 8 AA8 TYR B 100 ASN B 110 1 11 HELIX 9 AA9 PRO B 111 ALA B 136 1 26 HELIX 10 AB1 ASP B 139 LYS B 153 1 15 HELIX 11 AB2 THR B 169 GLY B 178 1 10 HELIX 12 AB3 SER B 180 GLN B 194 1 15 SHEET 1 AA1 4 HIS A 20 TYR A 24 0 SHEET 2 AA1 4 CYS A 93 SER A 99 -1 O VAL A 95 N HIS A 22 SHEET 3 AA1 4 THR A 39 LYS A 45 -1 N LEU A 40 O ILE A 98 SHEET 4 AA1 4 PHE A 70 ILE A 71 -1 O ILE A 71 N TYR A 41 SHEET 1 AA2 4 THR A 29 ILE A 31 0 SHEET 2 AA2 4 TRP A 86 ALA A 89 -1 O VAL A 87 N LEU A 30 SHEET 3 AA2 4 SER A 47 LYS A 53 -1 N LEU A 51 O TRP A 86 SHEET 4 AA2 4 GLU A 59 ASN A 66 -1 O MET A 60 N ILE A 52 SHEET 1 AA3 4 MET A 158 HIS A 160 0 SHEET 2 AA3 4 GLY A 163 LYS A 167 -1 O GLN A 165 N MET A 158 SHEET 3 AA3 4 THR A 203 TYR A 207 -1 O VAL A 206 N MET A 164 SHEET 4 AA3 4 ILE A 197 HIS A 200 -1 N SER A 198 O VAL A 205 SHEET 1 AA4 4 HIS B 20 TYR B 24 0 SHEET 2 AA4 4 CYS B 93 SER B 99 -1 O VAL B 95 N HIS B 22 SHEET 3 AA4 4 THR B 39 LYS B 45 -1 N TYR B 42 O ALA B 96 SHEET 4 AA4 4 PHE B 70 ILE B 71 -1 O ILE B 71 N TYR B 41 SHEET 1 AA5 4 THR B 29 ILE B 31 0 SHEET 2 AA5 4 TRP B 86 ALA B 89 -1 O VAL B 87 N ILE B 31 SHEET 3 AA5 4 VAL B 48 LYS B 53 -1 N LEU B 51 O TRP B 86 SHEET 4 AA5 4 GLU B 59 LEU B 65 -1 O SER B 63 N VAL B 50 SHEET 1 AA6 4 MET B 158 THR B 159 0 SHEET 2 AA6 4 GLY B 163 LYS B 167 -1 O GLN B 165 N MET B 158 SHEET 3 AA6 4 THR B 203 TYR B 207 -1 O VAL B 206 N MET B 164 SHEET 4 AA6 4 ILE B 197 HIS B 200 -1 N SER B 198 O VAL B 205 SITE 1 AC1 18 VAL A 50 LEU A 62 SER A 63 ILE A 71 SITE 2 AC1 18 GLY A 72 GLU A 73 LEU A 74 GLY A 75 SITE 3 AC1 18 ARG A 83 SER A 84 ALA A 85 ARG A 124 SITE 4 AC1 18 THR A 128 HOH A 446 HOH A 469 HOH A 472 SITE 5 AC1 18 LEU B 125 SER B 129 SITE 1 AC2 3 HIS A 32 GLU A 35 HOH A 456 SITE 1 AC3 5 THR A 169 ARG A 170 ARG A 181 LYS A 202 SITE 2 AC3 5 HOH A 476 SITE 1 AC4 5 TRP A 14 VAL A 109 ASP A 139 VAL A 140 SITE 2 AC4 5 HOH A 543 SITE 1 AC5 19 LEU A 125 SER A 129 HOH A 458 ILE B 31 SITE 2 AC5 19 VAL B 50 LEU B 62 SER B 63 ILE B 71 SITE 3 AC5 19 GLY B 72 GLU B 73 LEU B 74 ARG B 83 SITE 4 AC5 19 SER B 84 ALA B 85 VAL B 87 ARG B 124 SITE 5 AC5 19 THR B 128 HOH B 465 HOH B 469 CRYST1 53.876 82.800 106.350 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018561 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009403 0.00000