data_6DU0 # _entry.id 6DU0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6DU0 pdb_00006du0 10.2210/pdb6du0/pdb WWPDB D_1000235231 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 6DI2 unspecified PDB . 6DI6 unspecified PDB . 6DTV unspecified PDB . 6DTZ unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DU0 _pdbx_database_status.recvd_initial_deposition_date 2018-06-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Salay, L.E.' 1 ? 'Chazin, W.J.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Proc. Natl. Acad. Sci. U.S.A.' _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 115 _citation.language ? _citation.page_first 13186 _citation.page_last 13191 _citation.title 'Yeast require redox switching in DNA primase.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1810715115 _citation.pdbx_database_id_PubMed 30541886 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary ;O'Brien, E. ; 1 ? primary 'Salay, L.E.' 2 ? primary 'Epum, E.A.' 3 ? primary 'Friedman, K.L.' 4 ? primary 'Chazin, W.J.' 5 ? primary 'Barton, J.K.' 6 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6DU0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.462 _cell.length_a_esd ? _cell.length_b 50.830 _cell.length_b_esd ? _cell.length_c 90.175 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DU0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA primase large subunit' 23313.291 1 2.7.7.- Y395L ? ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 non-polymer syn 'IRON/SULFUR CLUSTER' 351.640 1 ? ? ? ? 4 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 2 ? ? ? ? 5 water nat water 18.015 13 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DNA polymerase alpha:primase complex p58 subunit,Pol alpha-primase complex p58 subunit,DNA primase 58 kDa subunit' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGSDDEINAQSVWSEEISSNYPLCIKNLMEGLKKNHHLRYYGRQQLSLFLKGIGLSADEALKFWSEAFTRNGNMTMEKF NKELRYSFRHNYGLEGNRINYKPWDCHTILSKPRPGRGDYHGCPFRDWSHERLSAELRSMKLTQAQIISVLDSCQKGEYT IACTKVFEMTHNSASADLEIGEQTHIAHPNLYFERSRQLQK ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGSDDEINAQSVWSEEISSNYPLCIKNLMEGLKKNHHLRYYGRQQLSLFLKGIGLSADEALKFWSEAFTRNGNMTMEKF NKELRYSFRHNYGLEGNRINYKPWDCHTILSKPRPGRGDYHGCPFRDWSHERLSAELRSMKLTQAQIISVLDSCQKGEYT IACTKVFEMTHNSASADLEIGEQTHIAHPNLYFERSRQLQK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 SER n 1 5 ASP n 1 6 ASP n 1 7 GLU n 1 8 ILE n 1 9 ASN n 1 10 ALA n 1 11 GLN n 1 12 SER n 1 13 VAL n 1 14 TRP n 1 15 SER n 1 16 GLU n 1 17 GLU n 1 18 ILE n 1 19 SER n 1 20 SER n 1 21 ASN n 1 22 TYR n 1 23 PRO n 1 24 LEU n 1 25 CYS n 1 26 ILE n 1 27 LYS n 1 28 ASN n 1 29 LEU n 1 30 MET n 1 31 GLU n 1 32 GLY n 1 33 LEU n 1 34 LYS n 1 35 LYS n 1 36 ASN n 1 37 HIS n 1 38 HIS n 1 39 LEU n 1 40 ARG n 1 41 TYR n 1 42 TYR n 1 43 GLY n 1 44 ARG n 1 45 GLN n 1 46 GLN n 1 47 LEU n 1 48 SER n 1 49 LEU n 1 50 PHE n 1 51 LEU n 1 52 LYS n 1 53 GLY n 1 54 ILE n 1 55 GLY n 1 56 LEU n 1 57 SER n 1 58 ALA n 1 59 ASP n 1 60 GLU n 1 61 ALA n 1 62 LEU n 1 63 LYS n 1 64 PHE n 1 65 TRP n 1 66 SER n 1 67 GLU n 1 68 ALA n 1 69 PHE n 1 70 THR n 1 71 ARG n 1 72 ASN n 1 73 GLY n 1 74 ASN n 1 75 MET n 1 76 THR n 1 77 MET n 1 78 GLU n 1 79 LYS n 1 80 PHE n 1 81 ASN n 1 82 LYS n 1 83 GLU n 1 84 LEU n 1 85 ARG n 1 86 TYR n 1 87 SER n 1 88 PHE n 1 89 ARG n 1 90 HIS n 1 91 ASN n 1 92 TYR n 1 93 GLY n 1 94 LEU n 1 95 GLU n 1 96 GLY n 1 97 ASN n 1 98 ARG n 1 99 ILE n 1 100 ASN n 1 101 TYR n 1 102 LYS n 1 103 PRO n 1 104 TRP n 1 105 ASP n 1 106 CYS n 1 107 HIS n 1 108 THR n 1 109 ILE n 1 110 LEU n 1 111 SER n 1 112 LYS n 1 113 PRO n 1 114 ARG n 1 115 PRO n 1 116 GLY n 1 117 ARG n 1 118 GLY n 1 119 ASP n 1 120 TYR n 1 121 HIS n 1 122 GLY n 1 123 CYS n 1 124 PRO n 1 125 PHE n 1 126 ARG n 1 127 ASP n 1 128 TRP n 1 129 SER n 1 130 HIS n 1 131 GLU n 1 132 ARG n 1 133 LEU n 1 134 SER n 1 135 ALA n 1 136 GLU n 1 137 LEU n 1 138 ARG n 1 139 SER n 1 140 MET n 1 141 LYS n 1 142 LEU n 1 143 THR n 1 144 GLN n 1 145 ALA n 1 146 GLN n 1 147 ILE n 1 148 ILE n 1 149 SER n 1 150 VAL n 1 151 LEU n 1 152 ASP n 1 153 SER n 1 154 CYS n 1 155 GLN n 1 156 LYS n 1 157 GLY n 1 158 GLU n 1 159 TYR n 1 160 THR n 1 161 ILE n 1 162 ALA n 1 163 CYS n 1 164 THR n 1 165 LYS n 1 166 VAL n 1 167 PHE n 1 168 GLU n 1 169 MET n 1 170 THR n 1 171 HIS n 1 172 ASN n 1 173 SER n 1 174 ALA n 1 175 SER n 1 176 ALA n 1 177 ASP n 1 178 LEU n 1 179 GLU n 1 180 ILE n 1 181 GLY n 1 182 GLU n 1 183 GLN n 1 184 THR n 1 185 HIS n 1 186 ILE n 1 187 ALA n 1 188 HIS n 1 189 PRO n 1 190 ASN n 1 191 LEU n 1 192 TYR n 1 193 PHE n 1 194 GLU n 1 195 ARG n 1 196 SER n 1 197 ARG n 1 198 GLN n 1 199 LEU n 1 200 GLN n 1 201 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 201 _entity_src_gen.gene_src_common_name ;Baker's yeast ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PRI2, YKL045W, YKL258' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRI2_YEAST _struct_ref.pdbx_db_accession P20457 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DDEINAQSVWSEEISSNYPLCIKNLMEGLKKNHHLRYYGRQQLSLFLKGIGLSADEALKFWSEAFTRNGNMTMEKFNKEY RYSFRHNYGLEGNRINYKPWDCHTILSKPRPGRGDYHGCPFRDWSHERLSAELRSMKLTQAQIISVLDSCQKGEYTIACT KVFEMTHNSASADLEIGEQTHIAHPNLYFERSRQLQK ; _struct_ref.pdbx_align_begin 316 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6DU0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 201 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P20457 _struct_ref_seq.db_align_beg 316 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 512 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 316 _struct_ref_seq.pdbx_auth_seq_align_end 512 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6DU0 GLY A 1 ? UNP P20457 ? ? 'expression tag' 312 1 1 6DU0 PRO A 2 ? UNP P20457 ? ? 'expression tag' 313 2 1 6DU0 GLY A 3 ? UNP P20457 ? ? 'expression tag' 314 3 1 6DU0 SER A 4 ? UNP P20457 ? ? 'expression tag' 315 4 1 6DU0 LEU A 84 ? UNP P20457 TYR 395 'engineered mutation' 395 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SF4 non-polymer . 'IRON/SULFUR CLUSTER' ? 'Fe4 S4' 351.640 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DU0 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.86 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 34.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM TRIS 8.5, 40-60% MPD' _exptl_crystal_grow.pdbx_pH_range 7.5-9.0 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX-300' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-11-08 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97856 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-G' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97856 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-G _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6DU0 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.830 _reflns.d_resolution_low 30.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 29372 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.300 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.700 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.111 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.099 _reflns.pdbx_Rpim_I_all 0.053 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 97436 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.830 1.900 ? ? ? ? ? ? 2624 85.600 ? ? ? ? 0.380 ? ? ? ? ? ? ? ? 2.600 ? 1.082 ? ? 0.462 0.258 ? 1 1 0.876 ? 1.900 1.970 ? ? ? ? ? ? 2751 90.400 ? ? ? ? 0.407 ? ? ? ? ? ? ? ? 2.800 ? 1.091 ? ? 0.497 0.281 ? 2 1 0.240 ? 1.970 2.060 ? ? ? ? ? ? 2873 92.500 ? ? ? ? 0.273 ? ? ? ? ? ? ? ? 3.000 ? 1.067 ? ? 0.328 0.180 ? 3 1 0.965 ? 2.060 2.170 ? ? ? ? ? ? 2933 96.200 ? ? ? ? 0.236 ? ? ? ? ? ? ? ? 3.200 ? 1.127 ? ? 0.281 0.151 ? 4 1 0.969 ? 2.170 2.310 ? ? ? ? ? ? 3002 98.100 ? ? ? ? 0.304 ? ? ? ? ? ? ? ? 3.500 ? 1.185 ? ? 0.358 0.188 ? 5 1 0.354 ? 2.310 2.480 ? ? ? ? ? ? 3031 98.500 ? ? ? ? 0.165 ? ? ? ? ? ? ? ? 3.600 ? 1.069 ? ? 0.195 0.102 ? 6 1 0.986 ? 2.480 2.730 ? ? ? ? ? ? 3037 98.500 ? ? ? ? 0.132 ? ? ? ? ? ? ? ? 3.700 ? 1.115 ? ? 0.154 0.080 ? 7 1 0.990 ? 2.730 3.130 ? ? ? ? ? ? 3023 98.600 ? ? ? ? 0.094 ? ? ? ? ? ? ? ? 3.700 ? 1.141 ? ? 0.111 0.058 ? 8 1 0.994 ? 3.130 3.940 ? ? ? ? ? ? 3056 98.900 ? ? ? ? 0.069 ? ? ? ? ? ? ? ? 3.500 ? 1.138 ? ? 0.082 0.043 ? 9 1 0.994 ? 3.940 30.000 ? ? ? ? ? ? 3042 98.600 ? ? ? ? 0.060 ? ? ? ? ? ? ? ? 3.500 ? 1.070 ? ? 0.071 0.038 ? 10 1 0.992 ? # _refine.aniso_B[1][1] 11.2100 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -5.4600 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] -5.7500 _refine.B_iso_max 120.250 _refine.B_iso_mean 54.1260 _refine.B_iso_min 30.330 _refine.correlation_coeff_Fo_to_Fc 0.9420 _refine.correlation_coeff_Fo_to_Fc_free 0.9190 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DU0 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.8200 _refine.ls_d_res_low 29.2800 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15173 _refine.ls_number_reflns_R_free 847 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.0000 _refine.ls_percent_reflns_R_free 5.3000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2760 _refine.ls_R_factor_R_free 0.3241 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2734 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free 0.3544 _refine.ls_wR_factor_R_work 0.3215 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6DTZ _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.2040 _refine.pdbx_overall_ESU_R_Free 0.1890 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 13.3480 _refine.overall_SU_ML 0.3200 _refine.overall_SU_R_Cruickshank_DPI 0.2038 _refine.overall_SU_R_free 0.1889 _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set 0.4973 _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8200 _refine_hist.d_res_low 29.2800 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 1474 _refine_hist.pdbx_number_residues_total 180 _refine_hist.pdbx_B_iso_mean_ligand 65.87 _refine_hist.pdbx_B_iso_mean_solvent 49.68 _refine_hist.pdbx_number_atoms_protein 1431 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 0.014 1502 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.017 1300 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.156 1.684 2028 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.313 1.674 3024 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.343 5.000 177 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 35.696 20.759 79 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 16.152 15.000 244 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 20.491 15.000 11 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.064 0.200 196 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 0.020 1650 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 298 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.8180 _refine_ls_shell.d_res_low 1.8650 _refine_ls_shell.number_reflns_all 1072 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 62 _refine_ls_shell.number_reflns_R_work 1010 _refine_ls_shell.percent_reflns_obs 91.7000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.4710 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.5110 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6DU0 _struct.title 'Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain Y395L mutant' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DU0 _struct_keywords.text 'DNA primase, p58, iron-sulfur cluster, replication, regulatory subunit' _struct_keywords.pdbx_keywords REPLICATION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN A 11 ? TRP A 14 ? GLN A 322 TRP A 325 5 ? 4 HELX_P HELX_P2 AA2 SER A 15 ? SER A 20 ? SER A 326 SER A 331 1 ? 6 HELX_P HELX_P3 AA3 PRO A 23 ? HIS A 37 ? PRO A 334 HIS A 348 1 ? 15 HELX_P HELX_P4 AA4 ARG A 40 ? ILE A 54 ? ARG A 351 ILE A 365 1 ? 15 HELX_P HELX_P5 AA5 SER A 57 ? ARG A 71 ? SER A 368 ARG A 382 1 ? 15 HELX_P HELX_P6 AA6 ASN A 72 ? ASN A 74 ? ASN A 383 ASN A 385 5 ? 3 HELX_P HELX_P7 AA7 THR A 76 ? LEU A 84 ? THR A 387 LEU A 395 1 ? 9 HELX_P HELX_P8 AA8 LEU A 84 ? TYR A 92 ? LEU A 395 TYR A 403 1 ? 9 HELX_P HELX_P9 AA9 ASP A 105 ? LYS A 112 ? ASP A 416 LYS A 423 1 ? 8 HELX_P HELX_P10 AB1 CYS A 123 ? TRP A 128 ? CYS A 434 TRP A 439 1 ? 6 HELX_P HELX_P11 AB2 SER A 129 ? SER A 139 ? SER A 440 SER A 450 1 ? 11 HELX_P HELX_P12 AB3 THR A 143 ? LYS A 156 ? THR A 454 LYS A 467 1 ? 14 HELX_P HELX_P13 AB4 GLU A 158 ? THR A 170 ? GLU A 469 THR A 481 1 ? 13 HELX_P HELX_P14 AB5 HIS A 188 ? LYS A 201 ? HIS A 499 LYS A 512 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 25 SG ? ? ? 1_555 C SF4 . FE3 ? ? A CYS 336 A SF4 602 1_555 ? ? ? ? ? ? ? 2.282 ? ? metalc2 metalc ? ? A CYS 106 SG ? ? ? 1_555 C SF4 . FE4 ? ? A CYS 417 A SF4 602 1_555 ? ? ? ? ? ? ? 2.357 ? ? metalc3 metalc ? ? A CYS 123 SG ? ? ? 1_555 C SF4 . FE2 ? ? A CYS 434 A SF4 602 1_555 ? ? ? ? ? ? ? 2.282 ? ? metalc4 metalc ? ? A CYS 163 SG ? ? ? 1_555 C SF4 . FE1 ? ? A CYS 474 A SF4 602 1_555 ? ? ? ? ? ? ? 2.244 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 601 ? 1 'binding site for residue GOL A 601' AC2 Software A SF4 602 ? 6 'binding site for residue SF4 A 602' AC3 Software A MPD 603 ? 9 'binding site for residue MPD A 603' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 ILE A 186 ? ILE A 497 . ? 1_555 ? 2 AC2 6 CYS A 25 ? CYS A 336 . ? 1_555 ? 3 AC2 6 CYS A 106 ? CYS A 417 . ? 1_555 ? 4 AC2 6 CYS A 123 ? CYS A 434 . ? 1_555 ? 5 AC2 6 PHE A 125 ? PHE A 436 . ? 1_555 ? 6 AC2 6 CYS A 163 ? CYS A 474 . ? 1_555 ? 7 AC2 6 MPD D . ? MPD A 603 . ? 1_555 ? 8 AC3 9 CYS A 106 ? CYS A 417 . ? 1_555 ? 9 AC3 9 THR A 160 ? THR A 471 . ? 1_555 ? 10 AC3 9 THR A 164 ? THR A 475 . ? 1_555 ? 11 AC3 9 PHE A 167 ? PHE A 478 . ? 1_555 ? 12 AC3 9 ILE A 186 ? ILE A 497 . ? 1_555 ? 13 AC3 9 ALA A 187 ? ALA A 498 . ? 1_555 ? 14 AC3 9 HIS A 188 ? HIS A 499 . ? 1_555 ? 15 AC3 9 ARG A 195 ? ARG A 506 . ? 1_555 ? 16 AC3 9 SF4 C . ? SF4 A 602 . ? 1_555 ? # _atom_sites.entry_id 6DU0 _atom_sites.fract_transf_matrix[1][1] 0.026000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019673 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011090 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 312 ? ? ? A . n A 1 2 PRO 2 313 ? ? ? A . n A 1 3 GLY 3 314 ? ? ? A . n A 1 4 SER 4 315 ? ? ? A . n A 1 5 ASP 5 316 ? ? ? A . n A 1 6 ASP 6 317 317 ASP ASP A . n A 1 7 GLU 7 318 318 GLU GLU A . n A 1 8 ILE 8 319 319 ILE ILE A . n A 1 9 ASN 9 320 320 ASN ASN A . n A 1 10 ALA 10 321 321 ALA ALA A . n A 1 11 GLN 11 322 322 GLN GLN A . n A 1 12 SER 12 323 323 SER SER A . n A 1 13 VAL 13 324 324 VAL VAL A . n A 1 14 TRP 14 325 325 TRP TRP A . n A 1 15 SER 15 326 326 SER SER A . n A 1 16 GLU 16 327 327 GLU GLU A . n A 1 17 GLU 17 328 328 GLU GLU A . n A 1 18 ILE 18 329 329 ILE ILE A . n A 1 19 SER 19 330 330 SER SER A . n A 1 20 SER 20 331 331 SER SER A . n A 1 21 ASN 21 332 332 ASN ASN A . n A 1 22 TYR 22 333 333 TYR TYR A . n A 1 23 PRO 23 334 334 PRO PRO A . n A 1 24 LEU 24 335 335 LEU LEU A . n A 1 25 CYS 25 336 336 CYS CYS A . n A 1 26 ILE 26 337 337 ILE ILE A . n A 1 27 LYS 27 338 338 LYS LYS A . n A 1 28 ASN 28 339 339 ASN ASN A . n A 1 29 LEU 29 340 340 LEU LEU A . n A 1 30 MET 30 341 341 MET MET A . n A 1 31 GLU 31 342 342 GLU GLU A . n A 1 32 GLY 32 343 343 GLY GLY A . n A 1 33 LEU 33 344 344 LEU LEU A . n A 1 34 LYS 34 345 345 LYS LYS A . n A 1 35 LYS 35 346 346 LYS LYS A . n A 1 36 ASN 36 347 347 ASN ASN A . n A 1 37 HIS 37 348 348 HIS HIS A . n A 1 38 HIS 38 349 349 HIS HIS A . n A 1 39 LEU 39 350 350 LEU LEU A . n A 1 40 ARG 40 351 351 ARG ARG A . n A 1 41 TYR 41 352 352 TYR TYR A . n A 1 42 TYR 42 353 353 TYR TYR A . n A 1 43 GLY 43 354 354 GLY GLY A . n A 1 44 ARG 44 355 355 ARG ARG A . n A 1 45 GLN 45 356 356 GLN GLN A . n A 1 46 GLN 46 357 357 GLN GLN A . n A 1 47 LEU 47 358 358 LEU LEU A . n A 1 48 SER 48 359 359 SER SER A . n A 1 49 LEU 49 360 360 LEU LEU A . n A 1 50 PHE 50 361 361 PHE PHE A . n A 1 51 LEU 51 362 362 LEU LEU A . n A 1 52 LYS 52 363 363 LYS LYS A . n A 1 53 GLY 53 364 364 GLY GLY A . n A 1 54 ILE 54 365 365 ILE ILE A . n A 1 55 GLY 55 366 366 GLY GLY A . n A 1 56 LEU 56 367 367 LEU LEU A . n A 1 57 SER 57 368 368 SER SER A . n A 1 58 ALA 58 369 369 ALA ALA A . n A 1 59 ASP 59 370 370 ASP ASP A . n A 1 60 GLU 60 371 371 GLU GLU A . n A 1 61 ALA 61 372 372 ALA ALA A . n A 1 62 LEU 62 373 373 LEU LEU A . n A 1 63 LYS 63 374 374 LYS LYS A . n A 1 64 PHE 64 375 375 PHE PHE A . n A 1 65 TRP 65 376 376 TRP TRP A . n A 1 66 SER 66 377 377 SER SER A . n A 1 67 GLU 67 378 378 GLU GLU A . n A 1 68 ALA 68 379 379 ALA ALA A . n A 1 69 PHE 69 380 380 PHE PHE A . n A 1 70 THR 70 381 381 THR THR A . n A 1 71 ARG 71 382 382 ARG ARG A . n A 1 72 ASN 72 383 383 ASN ASN A . n A 1 73 GLY 73 384 384 GLY GLY A . n A 1 74 ASN 74 385 385 ASN ASN A . n A 1 75 MET 75 386 386 MET MET A . n A 1 76 THR 76 387 387 THR THR A . n A 1 77 MET 77 388 388 MET MET A . n A 1 78 GLU 78 389 389 GLU GLU A . n A 1 79 LYS 79 390 390 LYS LYS A . n A 1 80 PHE 80 391 391 PHE PHE A . n A 1 81 ASN 81 392 392 ASN ASN A . n A 1 82 LYS 82 393 393 LYS LYS A . n A 1 83 GLU 83 394 394 GLU GLU A . n A 1 84 LEU 84 395 395 LEU LEU A . n A 1 85 ARG 85 396 396 ARG ARG A . n A 1 86 TYR 86 397 397 TYR TYR A . n A 1 87 SER 87 398 398 SER SER A . n A 1 88 PHE 88 399 399 PHE PHE A . n A 1 89 ARG 89 400 400 ARG ARG A . n A 1 90 HIS 90 401 401 HIS HIS A . n A 1 91 ASN 91 402 402 ASN ASN A . n A 1 92 TYR 92 403 403 TYR TYR A . n A 1 93 GLY 93 404 404 GLY GLY A . n A 1 94 LEU 94 405 405 LEU LEU A . n A 1 95 GLU 95 406 406 GLU GLU A . n A 1 96 GLY 96 407 ? ? ? A . n A 1 97 ASN 97 408 ? ? ? A . n A 1 98 ARG 98 409 409 ARG ARG A . n A 1 99 ILE 99 410 410 ILE ILE A . n A 1 100 ASN 100 411 411 ASN ASN A . n A 1 101 TYR 101 412 412 TYR TYR A . n A 1 102 LYS 102 413 413 LYS LYS A . n A 1 103 PRO 103 414 414 PRO PRO A . n A 1 104 TRP 104 415 415 TRP TRP A . n A 1 105 ASP 105 416 416 ASP ASP A . n A 1 106 CYS 106 417 417 CYS CYS A . n A 1 107 HIS 107 418 418 HIS HIS A . n A 1 108 THR 108 419 419 THR THR A . n A 1 109 ILE 109 420 420 ILE ILE A . n A 1 110 LEU 110 421 421 LEU LEU A . n A 1 111 SER 111 422 422 SER SER A . n A 1 112 LYS 112 423 423 LYS LYS A . n A 1 113 PRO 113 424 424 PRO PRO A . n A 1 114 ARG 114 425 425 ARG ARG A . n A 1 115 PRO 115 426 426 PRO PRO A . n A 1 116 GLY 116 427 427 GLY GLY A . n A 1 117 ARG 117 428 428 ARG ARG A . n A 1 118 GLY 118 429 429 GLY GLY A . n A 1 119 ASP 119 430 430 ASP ASP A . n A 1 120 TYR 120 431 431 TYR TYR A . n A 1 121 HIS 121 432 432 HIS HIS A . n A 1 122 GLY 122 433 433 GLY GLY A . n A 1 123 CYS 123 434 434 CYS CYS A . n A 1 124 PRO 124 435 435 PRO PRO A . n A 1 125 PHE 125 436 436 PHE PHE A . n A 1 126 ARG 126 437 437 ARG ARG A . n A 1 127 ASP 127 438 438 ASP ASP A . n A 1 128 TRP 128 439 439 TRP TRP A . n A 1 129 SER 129 440 440 SER SER A . n A 1 130 HIS 130 441 441 HIS HIS A . n A 1 131 GLU 131 442 442 GLU GLU A . n A 1 132 ARG 132 443 443 ARG ARG A . n A 1 133 LEU 133 444 444 LEU LEU A . n A 1 134 SER 134 445 445 SER SER A . n A 1 135 ALA 135 446 446 ALA ALA A . n A 1 136 GLU 136 447 447 GLU GLU A . n A 1 137 LEU 137 448 448 LEU LEU A . n A 1 138 ARG 138 449 449 ARG ARG A . n A 1 139 SER 139 450 450 SER SER A . n A 1 140 MET 140 451 451 MET MET A . n A 1 141 LYS 141 452 452 LYS LYS A . n A 1 142 LEU 142 453 453 LEU LEU A . n A 1 143 THR 143 454 454 THR THR A . n A 1 144 GLN 144 455 455 GLN GLN A . n A 1 145 ALA 145 456 456 ALA ALA A . n A 1 146 GLN 146 457 457 GLN GLN A . n A 1 147 ILE 147 458 458 ILE ILE A . n A 1 148 ILE 148 459 459 ILE ILE A . n A 1 149 SER 149 460 460 SER SER A . n A 1 150 VAL 150 461 461 VAL VAL A . n A 1 151 LEU 151 462 462 LEU LEU A . n A 1 152 ASP 152 463 463 ASP ASP A . n A 1 153 SER 153 464 464 SER SER A . n A 1 154 CYS 154 465 465 CYS CYS A . n A 1 155 GLN 155 466 466 GLN GLN A . n A 1 156 LYS 156 467 467 LYS LYS A . n A 1 157 GLY 157 468 468 GLY GLY A . n A 1 158 GLU 158 469 469 GLU GLU A . n A 1 159 TYR 159 470 470 TYR TYR A . n A 1 160 THR 160 471 471 THR THR A . n A 1 161 ILE 161 472 472 ILE ILE A . n A 1 162 ALA 162 473 473 ALA ALA A . n A 1 163 CYS 163 474 474 CYS CYS A . n A 1 164 THR 164 475 475 THR THR A . n A 1 165 LYS 165 476 476 LYS LYS A . n A 1 166 VAL 166 477 477 VAL VAL A . n A 1 167 PHE 167 478 478 PHE PHE A . n A 1 168 GLU 168 479 479 GLU GLU A . n A 1 169 MET 169 480 480 MET MET A . n A 1 170 THR 170 481 481 THR THR A . n A 1 171 HIS 171 482 482 HIS HIS A . n A 1 172 ASN 172 483 ? ? ? A . n A 1 173 SER 173 484 ? ? ? A . n A 1 174 ALA 174 485 ? ? ? A . n A 1 175 SER 175 486 ? ? ? A . n A 1 176 ALA 176 487 ? ? ? A . n A 1 177 ASP 177 488 ? ? ? A . n A 1 178 LEU 178 489 ? ? ? A . n A 1 179 GLU 179 490 ? ? ? A . n A 1 180 ILE 180 491 ? ? ? A . n A 1 181 GLY 181 492 ? ? ? A . n A 1 182 GLU 182 493 ? ? ? A . n A 1 183 GLN 183 494 ? ? ? A . n A 1 184 THR 184 495 ? ? ? A . n A 1 185 HIS 185 496 ? ? ? A . n A 1 186 ILE 186 497 497 ILE ILE A . n A 1 187 ALA 187 498 498 ALA ALA A . n A 1 188 HIS 188 499 499 HIS HIS A . n A 1 189 PRO 189 500 500 PRO PRO A . n A 1 190 ASN 190 501 501 ASN ASN A . n A 1 191 LEU 191 502 502 LEU LEU A . n A 1 192 TYR 192 503 503 TYR TYR A . n A 1 193 PHE 193 504 504 PHE PHE A . n A 1 194 GLU 194 505 505 GLU GLU A . n A 1 195 ARG 195 506 506 ARG ARG A . n A 1 196 SER 196 507 507 SER SER A . n A 1 197 ARG 197 508 508 ARG ARG A . n A 1 198 GLN 198 509 509 GLN GLN A . n A 1 199 LEU 199 510 510 LEU LEU A . n A 1 200 GLN 200 511 511 GLN GLN A . n A 1 201 LYS 201 512 512 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 601 601 GOL GOL A . C 3 SF4 1 602 1 SF4 SF4 A . D 4 MPD 1 603 1 MPD MPD A . E 4 MPD 1 604 2 MPD MPD A . F 5 HOH 1 701 14 HOH HOH A . F 5 HOH 2 702 8 HOH HOH A . F 5 HOH 3 703 7 HOH HOH A . F 5 HOH 4 704 4 HOH HOH A . F 5 HOH 5 705 17 HOH HOH A . F 5 HOH 6 706 16 HOH HOH A . F 5 HOH 7 707 2 HOH HOH A . F 5 HOH 8 708 1 HOH HOH A . F 5 HOH 9 709 13 HOH HOH A . F 5 HOH 10 710 5 HOH HOH A . F 5 HOH 11 711 3 HOH HOH A . F 5 HOH 12 712 12 HOH HOH A . F 5 HOH 13 713 15 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 25 ? A CYS 336 ? 1_555 FE3 ? C SF4 . ? A SF4 602 ? 1_555 S1 ? C SF4 . ? A SF4 602 ? 1_555 124.6 ? 2 SG ? A CYS 25 ? A CYS 336 ? 1_555 FE3 ? C SF4 . ? A SF4 602 ? 1_555 S2 ? C SF4 . ? A SF4 602 ? 1_555 117.0 ? 3 S1 ? C SF4 . ? A SF4 602 ? 1_555 FE3 ? C SF4 . ? A SF4 602 ? 1_555 S2 ? C SF4 . ? A SF4 602 ? 1_555 91.6 ? 4 SG ? A CYS 25 ? A CYS 336 ? 1_555 FE3 ? C SF4 . ? A SF4 602 ? 1_555 S4 ? C SF4 . ? A SF4 602 ? 1_555 127.6 ? 5 S1 ? C SF4 . ? A SF4 602 ? 1_555 FE3 ? C SF4 . ? A SF4 602 ? 1_555 S4 ? C SF4 . ? A SF4 602 ? 1_555 92.4 ? 6 S2 ? C SF4 . ? A SF4 602 ? 1_555 FE3 ? C SF4 . ? A SF4 602 ? 1_555 S4 ? C SF4 . ? A SF4 602 ? 1_555 94.7 ? 7 SG ? A CYS 106 ? A CYS 417 ? 1_555 FE4 ? C SF4 . ? A SF4 602 ? 1_555 S1 ? C SF4 . ? A SF4 602 ? 1_555 155.2 ? 8 SG ? A CYS 106 ? A CYS 417 ? 1_555 FE4 ? C SF4 . ? A SF4 602 ? 1_555 S2 ? C SF4 . ? A SF4 602 ? 1_555 105.5 ? 9 S1 ? C SF4 . ? A SF4 602 ? 1_555 FE4 ? C SF4 . ? A SF4 602 ? 1_555 S2 ? C SF4 . ? A SF4 602 ? 1_555 88.2 ? 10 SG ? A CYS 106 ? A CYS 417 ? 1_555 FE4 ? C SF4 . ? A SF4 602 ? 1_555 S3 ? C SF4 . ? A SF4 602 ? 1_555 114.7 ? 11 S1 ? C SF4 . ? A SF4 602 ? 1_555 FE4 ? C SF4 . ? A SF4 602 ? 1_555 S3 ? C SF4 . ? A SF4 602 ? 1_555 85.9 ? 12 S2 ? C SF4 . ? A SF4 602 ? 1_555 FE4 ? C SF4 . ? A SF4 602 ? 1_555 S3 ? C SF4 . ? A SF4 602 ? 1_555 88.1 ? 13 SG ? A CYS 123 ? A CYS 434 ? 1_555 FE2 ? C SF4 . ? A SF4 602 ? 1_555 S1 ? C SF4 . ? A SF4 602 ? 1_555 116.7 ? 14 SG ? A CYS 123 ? A CYS 434 ? 1_555 FE2 ? C SF4 . ? A SF4 602 ? 1_555 S3 ? C SF4 . ? A SF4 602 ? 1_555 139.5 ? 15 S1 ? C SF4 . ? A SF4 602 ? 1_555 FE2 ? C SF4 . ? A SF4 602 ? 1_555 S3 ? C SF4 . ? A SF4 602 ? 1_555 87.9 ? 16 SG ? A CYS 123 ? A CYS 434 ? 1_555 FE2 ? C SF4 . ? A SF4 602 ? 1_555 S4 ? C SF4 . ? A SF4 602 ? 1_555 118.0 ? 17 S1 ? C SF4 . ? A SF4 602 ? 1_555 FE2 ? C SF4 . ? A SF4 602 ? 1_555 S4 ? C SF4 . ? A SF4 602 ? 1_555 93.1 ? 18 S3 ? C SF4 . ? A SF4 602 ? 1_555 FE2 ? C SF4 . ? A SF4 602 ? 1_555 S4 ? C SF4 . ? A SF4 602 ? 1_555 90.1 ? 19 SG ? A CYS 163 ? A CYS 474 ? 1_555 FE1 ? C SF4 . ? A SF4 602 ? 1_555 S2 ? C SF4 . ? A SF4 602 ? 1_555 140.7 ? 20 SG ? A CYS 163 ? A CYS 474 ? 1_555 FE1 ? C SF4 . ? A SF4 602 ? 1_555 S3 ? C SF4 . ? A SF4 602 ? 1_555 119.5 ? 21 S2 ? C SF4 . ? A SF4 602 ? 1_555 FE1 ? C SF4 . ? A SF4 602 ? 1_555 S3 ? C SF4 . ? A SF4 602 ? 1_555 87.4 ? 22 SG ? A CYS 163 ? A CYS 474 ? 1_555 FE1 ? C SF4 . ? A SF4 602 ? 1_555 S4 ? C SF4 . ? A SF4 602 ? 1_555 111.3 ? 23 S2 ? C SF4 . ? A SF4 602 ? 1_555 FE1 ? C SF4 . ? A SF4 602 ? 1_555 S4 ? C SF4 . ? A SF4 602 ? 1_555 94.8 ? 24 S3 ? C SF4 . ? A SF4 602 ? 1_555 FE1 ? C SF4 . ? A SF4 602 ? 1_555 S4 ? C SF4 . ? A SF4 602 ? 1_555 91.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-12-12 2 'Structure model' 1 1 2018-12-26 3 'Structure model' 1 2 2019-01-09 4 'Structure model' 1 3 2020-01-01 5 'Structure model' 1 4 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Author supporting evidence' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 4 'Structure model' pdbx_audit_support 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 4 'Structure model' '_pdbx_audit_support.funding_organization' 8 5 'Structure model' '_database_2.pdbx_DOI' 9 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_phasing_MR.entry_id 6DU0 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 4.900 _pdbx_phasing_MR.d_res_low_rotation 29.260 _pdbx_phasing_MR.d_res_high_translation 4.900 _pdbx_phasing_MR.d_res_low_translation 29.260 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0222 1 ? 'data reduction' ? ? 'Zbyszek Otwinowski' hkl@hkl-xray.com ? ? ? ? ? http://www.hkl-xray.com/ ? DENZO ? ? program . 2 ? 'data scaling' ? ? 'Zbyszek Otwinowski' hkl@hkl-xray.com ? ? ? ? ? http://www.hkl-xray.com/ ? SCALEPACK ? ? program . 3 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk 'Tue Jun 20 23:45:36 2017 (svn exported)' ? ? ? ? http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program 2.7.17 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Sep. 1, 2017' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.24 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 416 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 419 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 382 ? ? -47.17 153.93 2 1 LYS A 452 ? ? 70.63 47.26 3 1 GLU A 469 ? ? -109.41 66.46 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 396 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.081 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 317 ? CG ? A ASP 6 CG 2 1 Y 1 A ASP 317 ? OD1 ? A ASP 6 OD1 3 1 Y 1 A ASP 317 ? OD2 ? A ASP 6 OD2 4 1 Y 1 A GLU 318 ? CG ? A GLU 7 CG 5 1 Y 1 A GLU 318 ? CD ? A GLU 7 CD 6 1 Y 1 A GLU 318 ? OE1 ? A GLU 7 OE1 7 1 Y 1 A GLU 318 ? OE2 ? A GLU 7 OE2 8 1 Y 1 A GLU 342 ? CG ? A GLU 31 CG 9 1 Y 1 A GLU 342 ? CD ? A GLU 31 CD 10 1 Y 1 A GLU 342 ? OE1 ? A GLU 31 OE1 11 1 Y 1 A GLU 342 ? OE2 ? A GLU 31 OE2 12 1 Y 1 A GLU 389 ? CG ? A GLU 78 CG 13 1 Y 1 A GLU 389 ? CD ? A GLU 78 CD 14 1 Y 1 A GLU 389 ? OE1 ? A GLU 78 OE1 15 1 Y 1 A GLU 389 ? OE2 ? A GLU 78 OE2 16 1 Y 1 A LYS 393 ? CG ? A LYS 82 CG 17 1 Y 1 A LYS 393 ? CD ? A LYS 82 CD 18 1 Y 1 A LYS 393 ? CE ? A LYS 82 CE 19 1 Y 1 A LYS 393 ? NZ ? A LYS 82 NZ 20 1 Y 1 A ARG 409 ? CG ? A ARG 98 CG 21 1 Y 1 A ARG 409 ? CD ? A ARG 98 CD 22 1 Y 1 A ARG 409 ? NE ? A ARG 98 NE 23 1 Y 1 A ARG 409 ? CZ ? A ARG 98 CZ 24 1 Y 1 A ARG 409 ? NH1 ? A ARG 98 NH1 25 1 Y 1 A ARG 409 ? NH2 ? A ARG 98 NH2 26 1 Y 1 A LYS 413 ? CG ? A LYS 102 CG 27 1 Y 1 A LYS 413 ? CD ? A LYS 102 CD 28 1 Y 1 A LYS 413 ? CE ? A LYS 102 CE 29 1 Y 1 A LYS 413 ? NZ ? A LYS 102 NZ 30 1 Y 1 A ARG 428 ? CG ? A ARG 117 CG 31 1 Y 1 A ARG 428 ? CD ? A ARG 117 CD 32 1 Y 1 A ARG 428 ? NE ? A ARG 117 NE 33 1 Y 1 A ARG 428 ? CZ ? A ARG 117 CZ 34 1 Y 1 A ARG 428 ? NH1 ? A ARG 117 NH1 35 1 Y 1 A ARG 428 ? NH2 ? A ARG 117 NH2 36 1 Y 1 A GLU 442 ? CG ? A GLU 131 CG 37 1 Y 1 A GLU 442 ? CD ? A GLU 131 CD 38 1 Y 1 A GLU 442 ? OE1 ? A GLU 131 OE1 39 1 Y 1 A GLU 442 ? OE2 ? A GLU 131 OE2 40 1 Y 1 A GLN 455 ? CG ? A GLN 144 CG 41 1 Y 1 A GLN 455 ? CD ? A GLN 144 CD 42 1 Y 1 A GLN 455 ? OE1 ? A GLN 144 OE1 43 1 Y 1 A GLN 455 ? NE2 ? A GLN 144 NE2 44 1 Y 1 A GLN 466 ? CG ? A GLN 155 CG 45 1 Y 1 A GLN 466 ? CD ? A GLN 155 CD 46 1 Y 1 A GLN 466 ? OE1 ? A GLN 155 OE1 47 1 Y 1 A GLN 466 ? NE2 ? A GLN 155 NE2 48 1 Y 1 A LYS 467 ? CG ? A LYS 156 CG 49 1 Y 1 A LYS 467 ? CD ? A LYS 156 CD 50 1 Y 1 A LYS 467 ? CE ? A LYS 156 CE 51 1 Y 1 A LYS 467 ? NZ ? A LYS 156 NZ 52 1 Y 1 A GLU 479 ? CG ? A GLU 168 CG 53 1 Y 1 A GLU 479 ? CD ? A GLU 168 CD 54 1 Y 1 A GLU 479 ? OE1 ? A GLU 168 OE1 55 1 Y 1 A GLU 479 ? OE2 ? A GLU 168 OE2 56 1 Y 1 A GLU 505 ? CG ? A GLU 194 CG 57 1 Y 1 A GLU 505 ? CD ? A GLU 194 CD 58 1 Y 1 A GLU 505 ? OE1 ? A GLU 194 OE1 59 1 Y 1 A GLU 505 ? OE2 ? A GLU 194 OE2 60 1 Y 1 A GLN 509 ? CG ? A GLN 198 CG 61 1 Y 1 A GLN 509 ? CD ? A GLN 198 CD 62 1 Y 1 A GLN 509 ? OE1 ? A GLN 198 OE1 63 1 Y 1 A GLN 509 ? NE2 ? A GLN 198 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 312 ? A GLY 1 2 1 Y 1 A PRO 313 ? A PRO 2 3 1 Y 1 A GLY 314 ? A GLY 3 4 1 Y 1 A SER 315 ? A SER 4 5 1 Y 1 A ASP 316 ? A ASP 5 6 1 Y 1 A GLY 407 ? A GLY 96 7 1 Y 1 A ASN 408 ? A ASN 97 8 1 Y 1 A ASN 483 ? A ASN 172 9 1 Y 1 A SER 484 ? A SER 173 10 1 Y 1 A ALA 485 ? A ALA 174 11 1 Y 1 A SER 486 ? A SER 175 12 1 Y 1 A ALA 487 ? A ALA 176 13 1 Y 1 A ASP 488 ? A ASP 177 14 1 Y 1 A LEU 489 ? A LEU 178 15 1 Y 1 A GLU 490 ? A GLU 179 16 1 Y 1 A ILE 491 ? A ILE 180 17 1 Y 1 A GLY 492 ? A GLY 181 18 1 Y 1 A GLU 493 ? A GLU 182 19 1 Y 1 A GLN 494 ? A GLN 183 20 1 Y 1 A THR 495 ? A THR 184 21 1 Y 1 A HIS 496 ? A HIS 185 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 MPD C1 C N N 264 MPD C2 C N N 265 MPD O2 O N N 266 MPD CM C N N 267 MPD C3 C N N 268 MPD C4 C N S 269 MPD O4 O N N 270 MPD C5 C N N 271 MPD H11 H N N 272 MPD H12 H N N 273 MPD H13 H N N 274 MPD HO2 H N N 275 MPD HM1 H N N 276 MPD HM2 H N N 277 MPD HM3 H N N 278 MPD H31 H N N 279 MPD H32 H N N 280 MPD H4 H N N 281 MPD HO4 H N N 282 MPD H51 H N N 283 MPD H52 H N N 284 MPD H53 H N N 285 PHE N N N N 286 PHE CA C N S 287 PHE C C N N 288 PHE O O N N 289 PHE CB C N N 290 PHE CG C Y N 291 PHE CD1 C Y N 292 PHE CD2 C Y N 293 PHE CE1 C Y N 294 PHE CE2 C Y N 295 PHE CZ C Y N 296 PHE OXT O N N 297 PHE H H N N 298 PHE H2 H N N 299 PHE HA H N N 300 PHE HB2 H N N 301 PHE HB3 H N N 302 PHE HD1 H N N 303 PHE HD2 H N N 304 PHE HE1 H N N 305 PHE HE2 H N N 306 PHE HZ H N N 307 PHE HXT H N N 308 PRO N N N N 309 PRO CA C N S 310 PRO C C N N 311 PRO O O N N 312 PRO CB C N N 313 PRO CG C N N 314 PRO CD C N N 315 PRO OXT O N N 316 PRO H H N N 317 PRO HA H N N 318 PRO HB2 H N N 319 PRO HB3 H N N 320 PRO HG2 H N N 321 PRO HG3 H N N 322 PRO HD2 H N N 323 PRO HD3 H N N 324 PRO HXT H N N 325 SER N N N N 326 SER CA C N S 327 SER C C N N 328 SER O O N N 329 SER CB C N N 330 SER OG O N N 331 SER OXT O N N 332 SER H H N N 333 SER H2 H N N 334 SER HA H N N 335 SER HB2 H N N 336 SER HB3 H N N 337 SER HG H N N 338 SER HXT H N N 339 SF4 FE1 FE N N 340 SF4 FE2 FE N N 341 SF4 FE3 FE N N 342 SF4 FE4 FE N N 343 SF4 S1 S N N 344 SF4 S2 S N N 345 SF4 S3 S N N 346 SF4 S4 S N N 347 THR N N N N 348 THR CA C N S 349 THR C C N N 350 THR O O N N 351 THR CB C N R 352 THR OG1 O N N 353 THR CG2 C N N 354 THR OXT O N N 355 THR H H N N 356 THR H2 H N N 357 THR HA H N N 358 THR HB H N N 359 THR HG1 H N N 360 THR HG21 H N N 361 THR HG22 H N N 362 THR HG23 H N N 363 THR HXT H N N 364 TRP N N N N 365 TRP CA C N S 366 TRP C C N N 367 TRP O O N N 368 TRP CB C N N 369 TRP CG C Y N 370 TRP CD1 C Y N 371 TRP CD2 C Y N 372 TRP NE1 N Y N 373 TRP CE2 C Y N 374 TRP CE3 C Y N 375 TRP CZ2 C Y N 376 TRP CZ3 C Y N 377 TRP CH2 C Y N 378 TRP OXT O N N 379 TRP H H N N 380 TRP H2 H N N 381 TRP HA H N N 382 TRP HB2 H N N 383 TRP HB3 H N N 384 TRP HD1 H N N 385 TRP HE1 H N N 386 TRP HE3 H N N 387 TRP HZ2 H N N 388 TRP HZ3 H N N 389 TRP HH2 H N N 390 TRP HXT H N N 391 TYR N N N N 392 TYR CA C N S 393 TYR C C N N 394 TYR O O N N 395 TYR CB C N N 396 TYR CG C Y N 397 TYR CD1 C Y N 398 TYR CD2 C Y N 399 TYR CE1 C Y N 400 TYR CE2 C Y N 401 TYR CZ C Y N 402 TYR OH O N N 403 TYR OXT O N N 404 TYR H H N N 405 TYR H2 H N N 406 TYR HA H N N 407 TYR HB2 H N N 408 TYR HB3 H N N 409 TYR HD1 H N N 410 TYR HD2 H N N 411 TYR HE1 H N N 412 TYR HE2 H N N 413 TYR HH H N N 414 TYR HXT H N N 415 VAL N N N N 416 VAL CA C N S 417 VAL C C N N 418 VAL O O N N 419 VAL CB C N N 420 VAL CG1 C N N 421 VAL CG2 C N N 422 VAL OXT O N N 423 VAL H H N N 424 VAL H2 H N N 425 VAL HA H N N 426 VAL HB H N N 427 VAL HG11 H N N 428 VAL HG12 H N N 429 VAL HG13 H N N 430 VAL HG21 H N N 431 VAL HG22 H N N 432 VAL HG23 H N N 433 VAL HXT H N N 434 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 MPD C1 C2 sing N N 250 MPD C1 H11 sing N N 251 MPD C1 H12 sing N N 252 MPD C1 H13 sing N N 253 MPD C2 O2 sing N N 254 MPD C2 CM sing N N 255 MPD C2 C3 sing N N 256 MPD O2 HO2 sing N N 257 MPD CM HM1 sing N N 258 MPD CM HM2 sing N N 259 MPD CM HM3 sing N N 260 MPD C3 C4 sing N N 261 MPD C3 H31 sing N N 262 MPD C3 H32 sing N N 263 MPD C4 O4 sing N N 264 MPD C4 C5 sing N N 265 MPD C4 H4 sing N N 266 MPD O4 HO4 sing N N 267 MPD C5 H51 sing N N 268 MPD C5 H52 sing N N 269 MPD C5 H53 sing N N 270 PHE N CA sing N N 271 PHE N H sing N N 272 PHE N H2 sing N N 273 PHE CA C sing N N 274 PHE CA CB sing N N 275 PHE CA HA sing N N 276 PHE C O doub N N 277 PHE C OXT sing N N 278 PHE CB CG sing N N 279 PHE CB HB2 sing N N 280 PHE CB HB3 sing N N 281 PHE CG CD1 doub Y N 282 PHE CG CD2 sing Y N 283 PHE CD1 CE1 sing Y N 284 PHE CD1 HD1 sing N N 285 PHE CD2 CE2 doub Y N 286 PHE CD2 HD2 sing N N 287 PHE CE1 CZ doub Y N 288 PHE CE1 HE1 sing N N 289 PHE CE2 CZ sing Y N 290 PHE CE2 HE2 sing N N 291 PHE CZ HZ sing N N 292 PHE OXT HXT sing N N 293 PRO N CA sing N N 294 PRO N CD sing N N 295 PRO N H sing N N 296 PRO CA C sing N N 297 PRO CA CB sing N N 298 PRO CA HA sing N N 299 PRO C O doub N N 300 PRO C OXT sing N N 301 PRO CB CG sing N N 302 PRO CB HB2 sing N N 303 PRO CB HB3 sing N N 304 PRO CG CD sing N N 305 PRO CG HG2 sing N N 306 PRO CG HG3 sing N N 307 PRO CD HD2 sing N N 308 PRO CD HD3 sing N N 309 PRO OXT HXT sing N N 310 SER N CA sing N N 311 SER N H sing N N 312 SER N H2 sing N N 313 SER CA C sing N N 314 SER CA CB sing N N 315 SER CA HA sing N N 316 SER C O doub N N 317 SER C OXT sing N N 318 SER CB OG sing N N 319 SER CB HB2 sing N N 320 SER CB HB3 sing N N 321 SER OG HG sing N N 322 SER OXT HXT sing N N 323 SF4 FE1 S2 sing N N 324 SF4 FE1 S3 sing N N 325 SF4 FE1 S4 sing N N 326 SF4 FE2 S1 sing N N 327 SF4 FE2 S3 sing N N 328 SF4 FE2 S4 sing N N 329 SF4 FE3 S1 sing N N 330 SF4 FE3 S2 sing N N 331 SF4 FE3 S4 sing N N 332 SF4 FE4 S1 sing N N 333 SF4 FE4 S2 sing N N 334 SF4 FE4 S3 sing N N 335 THR N CA sing N N 336 THR N H sing N N 337 THR N H2 sing N N 338 THR CA C sing N N 339 THR CA CB sing N N 340 THR CA HA sing N N 341 THR C O doub N N 342 THR C OXT sing N N 343 THR CB OG1 sing N N 344 THR CB CG2 sing N N 345 THR CB HB sing N N 346 THR OG1 HG1 sing N N 347 THR CG2 HG21 sing N N 348 THR CG2 HG22 sing N N 349 THR CG2 HG23 sing N N 350 THR OXT HXT sing N N 351 TRP N CA sing N N 352 TRP N H sing N N 353 TRP N H2 sing N N 354 TRP CA C sing N N 355 TRP CA CB sing N N 356 TRP CA HA sing N N 357 TRP C O doub N N 358 TRP C OXT sing N N 359 TRP CB CG sing N N 360 TRP CB HB2 sing N N 361 TRP CB HB3 sing N N 362 TRP CG CD1 doub Y N 363 TRP CG CD2 sing Y N 364 TRP CD1 NE1 sing Y N 365 TRP CD1 HD1 sing N N 366 TRP CD2 CE2 doub Y N 367 TRP CD2 CE3 sing Y N 368 TRP NE1 CE2 sing Y N 369 TRP NE1 HE1 sing N N 370 TRP CE2 CZ2 sing Y N 371 TRP CE3 CZ3 doub Y N 372 TRP CE3 HE3 sing N N 373 TRP CZ2 CH2 doub Y N 374 TRP CZ2 HZ2 sing N N 375 TRP CZ3 CH2 sing Y N 376 TRP CZ3 HZ3 sing N N 377 TRP CH2 HH2 sing N N 378 TRP OXT HXT sing N N 379 TYR N CA sing N N 380 TYR N H sing N N 381 TYR N H2 sing N N 382 TYR CA C sing N N 383 TYR CA CB sing N N 384 TYR CA HA sing N N 385 TYR C O doub N N 386 TYR C OXT sing N N 387 TYR CB CG sing N N 388 TYR CB HB2 sing N N 389 TYR CB HB3 sing N N 390 TYR CG CD1 doub Y N 391 TYR CG CD2 sing Y N 392 TYR CD1 CE1 sing Y N 393 TYR CD1 HD1 sing N N 394 TYR CD2 CE2 doub Y N 395 TYR CD2 HD2 sing N N 396 TYR CE1 CZ doub Y N 397 TYR CE1 HE1 sing N N 398 TYR CE2 CZ sing Y N 399 TYR CE2 HE2 sing N N 400 TYR CZ OH sing N N 401 TYR OH HH sing N N 402 TYR OXT HXT sing N N 403 VAL N CA sing N N 404 VAL N H sing N N 405 VAL N H2 sing N N 406 VAL CA C sing N N 407 VAL CA CB sing N N 408 VAL CA HA sing N N 409 VAL C O doub N N 410 VAL C OXT sing N N 411 VAL CB CG1 sing N N 412 VAL CB CG2 sing N N 413 VAL CB HB sing N N 414 VAL CG1 HG11 sing N N 415 VAL CG1 HG12 sing N N 416 VAL CG1 HG13 sing N N 417 VAL CG2 HG21 sing N N 418 VAL CG2 HG22 sing N N 419 VAL CG2 HG23 sing N N 420 VAL OXT HXT sing N N 421 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'R35 GM118089' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'IRON/SULFUR CLUSTER' SF4 4 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6DTZ _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #