data_6DVK # _entry.id 6DVK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6DVK pdb_00006dvk 10.2210/pdb6dvk/pdb WWPDB D_1000235238 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-06-26 2 'Structure model' 1 1 2019-09-04 3 'Structure model' 1 2 2019-09-18 4 'Structure model' 1 3 2020-01-01 5 'Structure model' 1 4 2020-01-15 6 'Structure model' 1 5 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Author supporting evidence' 6 5 'Structure model' 'Data collection' 7 6 'Structure model' 'Data collection' 8 6 'Structure model' 'Database references' 9 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' pdbx_audit_support 6 5 'Structure model' reflns_shell 7 6 'Structure model' chem_comp_atom 8 6 'Structure model' chem_comp_bond 9 6 'Structure model' database_2 10 6 'Structure model' pdbx_struct_conn_angle 11 6 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation.year' 9 3 'Structure model' '_citation.journal_volume' 10 3 'Structure model' '_citation.page_first' 11 3 'Structure model' '_citation.page_last' 12 3 'Structure model' '_citation_author.identifier_ORCID' 13 4 'Structure model' '_pdbx_audit_support.funding_organization' 14 5 'Structure model' '_reflns_shell.percent_possible_all' 15 6 'Structure model' '_database_2.pdbx_DOI' 16 6 'Structure model' '_database_2.pdbx_database_accession' 17 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 18 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 19 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 20 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 21 6 'Structure model' '_pdbx_struct_conn_angle.value' 22 6 'Structure model' '_struct_conn.pdbx_dist_value' 23 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 6 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DVK _pdbx_database_status.recvd_initial_deposition_date 2018-06-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Eiler, D.R.' 1 0000-0002-1714-492X 'Yesselman, J.D.' 2 ? 'Costantino, D.A.' 3 ? 'Das, R.' 4 0000-0001-7497-0972 'Kieft, J.S.' 5 0000-0002-3718-1891 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Nanotechnol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1748-3395 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 866 _citation.page_last 873 _citation.title 'Computational design of three-dimensional RNA structure and function.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41565-019-0517-8 _citation.pdbx_database_id_PubMed 31427748 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yesselman, J.D.' 1 ? primary 'Eiler, D.' 2 ? primary 'Carlson, E.D.' 3 ? primary 'Gotrik, M.R.' 4 ? primary ;d'Aquino, A.E. ; 5 ? primary 'Ooms, A.N.' 6 ? primary 'Kladwang, W.' 7 ? primary 'Carlson, P.D.' 8 ? primary 'Shi, X.' 9 ? primary 'Costantino, D.A.' 10 ? primary 'Herschlag, D.' 11 ? primary 'Lucks, J.B.' 12 ? primary 'Jewett, M.C.' 13 ? primary 'Kieft, J.S.' 14 ? primary 'Das, R.' 15 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (95-MER)' 30577.203 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 3 non-polymer syn 'COBALT (II) ION' 58.933 4 ? ? ? ? 4 water nat water 18.015 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GUUGAUAUGGAUUUACUCCGAGGAGACGAACUACCACGAACAGGGGAAACUCUACCCGUGGCGUCUCCGUUUGACGAGUA AGUCCUAAGUCAACA ; _entity_poly.pdbx_seq_one_letter_code_can ;GUUGAUAUGGAUUUACUCCGAGGAGACGAACUACCACGAACAGGGGAAACUCUACCCGUGGCGUCUCCGUUUGACGAGUA AGUCCUAAGUCAACA ; _entity_poly.pdbx_strand_id H _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'COBALT (II) ION' CO 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 U n 1 4 G n 1 5 A n 1 6 U n 1 7 A n 1 8 U n 1 9 G n 1 10 G n 1 11 A n 1 12 U n 1 13 U n 1 14 U n 1 15 A n 1 16 C n 1 17 U n 1 18 C n 1 19 C n 1 20 G n 1 21 A n 1 22 G n 1 23 G n 1 24 A n 1 25 G n 1 26 A n 1 27 C n 1 28 G n 1 29 A n 1 30 A n 1 31 C n 1 32 U n 1 33 A n 1 34 C n 1 35 C n 1 36 A n 1 37 C n 1 38 G n 1 39 A n 1 40 A n 1 41 C n 1 42 A n 1 43 G n 1 44 G n 1 45 G n 1 46 G n 1 47 A n 1 48 A n 1 49 A n 1 50 C n 1 51 U n 1 52 C n 1 53 U n 1 54 A n 1 55 C n 1 56 C n 1 57 C n 1 58 G n 1 59 U n 1 60 G n 1 61 G n 1 62 C n 1 63 G n 1 64 U n 1 65 C n 1 66 U n 1 67 C n 1 68 C n 1 69 G n 1 70 U n 1 71 U n 1 72 U n 1 73 G n 1 74 A n 1 75 C n 1 76 G n 1 77 A n 1 78 G n 1 79 U n 1 80 A n 1 81 A n 1 82 G n 1 83 U n 1 84 C n 1 85 C n 1 86 U n 1 87 A n 1 88 A n 1 89 G n 1 90 U n 1 91 C n 1 92 A n 1 93 A n 1 94 C n 1 95 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 95 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G H . n A 1 2 U 2 2 2 U U H . n A 1 3 U 3 3 3 U U H . n A 1 4 G 4 4 4 G G H . n A 1 5 A 5 5 5 A A H . n A 1 6 U 6 6 6 U U H . n A 1 7 A 7 7 7 A A H . n A 1 8 U 8 8 8 U U H . n A 1 9 G 9 9 9 G G H . n A 1 10 G 10 10 10 G G H . n A 1 11 A 11 11 11 A A H . n A 1 12 U 12 12 12 U U H . n A 1 13 U 13 13 13 U U H . n A 1 14 U 14 14 14 U U H . n A 1 15 A 15 15 15 A A H . n A 1 16 C 16 16 16 C C H . n A 1 17 U 17 17 17 U U H . n A 1 18 C 18 18 18 C C H . n A 1 19 C 19 19 19 C C H . n A 1 20 G 20 20 20 G G H . n A 1 21 A 21 21 21 A A H . n A 1 22 G 22 22 22 G G H . n A 1 23 G 23 23 23 G G H . n A 1 24 A 24 24 24 A A H . n A 1 25 G 25 25 25 G G H . n A 1 26 A 26 26 26 A A H . n A 1 27 C 27 27 27 C C H . n A 1 28 G 28 28 28 G G H . n A 1 29 A 29 29 29 A A H . n A 1 30 A 30 30 30 A A H . n A 1 31 C 31 31 31 C C H . n A 1 32 U 32 32 32 U U H . n A 1 33 A 33 33 33 A A H . n A 1 34 C 34 34 34 C C H . n A 1 35 C 35 35 35 C C H . n A 1 36 A 36 36 36 A A H . n A 1 37 C 37 37 37 C C H . n A 1 38 G 38 38 38 G G H . n A 1 39 A 39 39 39 A A H . n A 1 40 A 40 40 40 A A H . n A 1 41 C 41 41 41 C C H . n A 1 42 A 42 42 42 A A H . n A 1 43 G 43 43 43 G G H . n A 1 44 G 44 44 44 G G H . n A 1 45 G 45 45 45 G G H . n A 1 46 G 46 46 46 G G H . n A 1 47 A 47 47 47 A A H . n A 1 48 A 48 48 48 A A H . n A 1 49 A 49 49 49 A A H . n A 1 50 C 50 50 50 C C H . n A 1 51 U 51 51 51 U U H . n A 1 52 C 52 52 52 C C H . n A 1 53 U 53 53 53 U U H . n A 1 54 A 54 54 54 A A H . n A 1 55 C 55 55 55 C C H . n A 1 56 C 56 56 56 C C H . n A 1 57 C 57 57 57 C C H . n A 1 58 G 58 58 58 G G H . n A 1 59 U 59 59 59 U U H . n A 1 60 G 60 60 60 G G H . n A 1 61 G 61 61 61 G G H . n A 1 62 C 62 62 62 C C H . n A 1 63 G 63 63 63 G G H . n A 1 64 U 64 64 64 U U H . n A 1 65 C 65 65 65 C C H . n A 1 66 U 66 66 66 U U H . n A 1 67 C 67 67 67 C C H . n A 1 68 C 68 68 68 C C H . n A 1 69 G 69 69 69 G G H . n A 1 70 U 70 70 70 U U H . n A 1 71 U 71 71 71 U U H . n A 1 72 U 72 72 72 U U H . n A 1 73 G 73 73 73 G G H . n A 1 74 A 74 74 74 A A H . n A 1 75 C 75 75 75 C C H . n A 1 76 G 76 76 76 G G H . n A 1 77 A 77 77 77 A A H . n A 1 78 G 78 78 78 G G H . n A 1 79 U 79 79 79 U U H . n A 1 80 A 80 80 80 A A H . n A 1 81 A 81 81 81 A A H . n A 1 82 G 82 82 82 G G H . n A 1 83 U 83 83 83 U U H . n A 1 84 C 84 84 84 C C H . n A 1 85 C 85 85 85 C C H . n A 1 86 U 86 86 86 U U H . n A 1 87 A 87 87 87 A A H . n A 1 88 A 88 88 88 A A H . n A 1 89 G 89 89 89 G G H . n A 1 90 U 90 90 90 U U H . n A 1 91 C 91 91 91 C C H . n A 1 92 A 92 92 92 A A H . n A 1 93 A 93 93 93 A A H . n A 1 94 C 94 94 94 C C H . n A 1 95 A 95 95 95 A A H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 23 MG MG H . C 2 MG 1 102 24 MG MG H . D 2 MG 1 103 25 MG MG H . E 2 MG 1 104 27 MG MG H . F 3 CO 1 105 1 CO CO H . G 3 CO 1 106 2 CO CO H . H 3 CO 1 107 3 CO CO H . I 3 CO 1 108 4 CO CO H . J 2 MG 1 109 8048 MG MO6 H . K 4 HOH 1 201 2 HOH HOH H . K 4 HOH 2 202 8048 HOH MO6 H . K 4 HOH 3 203 8048 HOH MO6 H . K 4 HOH 4 204 3 HOH HOH H . K 4 HOH 5 205 8048 HOH MO6 H . K 4 HOH 6 206 8048 HOH MO6 H . K 4 HOH 7 207 8048 HOH MO6 H . K 4 HOH 8 208 8048 HOH MO6 H . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 H A 95 ? "C5'" ? A A 95 "C5'" 2 1 Y 1 H A 95 ? "C4'" ? A A 95 "C4'" 3 1 Y 1 H A 95 ? "O4'" ? A A 95 "O4'" 4 1 Y 1 H A 95 ? "C3'" ? A A 95 "C3'" 5 1 Y 1 H A 95 ? "O3'" ? A A 95 "O3'" 6 1 Y 1 H A 95 ? "C2'" ? A A 95 "C2'" 7 1 Y 1 H A 95 ? "O2'" ? A A 95 "O2'" 8 1 Y 1 H A 95 ? "C1'" ? A A 95 "C1'" 9 1 Y 1 H A 95 ? N9 ? A A 95 N9 10 1 Y 1 H A 95 ? C8 ? A A 95 C8 11 1 Y 1 H A 95 ? N7 ? A A 95 N7 12 1 Y 1 H A 95 ? C5 ? A A 95 C5 13 1 Y 1 H A 95 ? C6 ? A A 95 C6 14 1 Y 1 H A 95 ? N6 ? A A 95 N6 15 1 Y 1 H A 95 ? N1 ? A A 95 N1 16 1 Y 1 H A 95 ? C2 ? A A 95 C2 17 1 Y 1 H A 95 ? N3 ? A A 95 N3 18 1 Y 1 H A 95 ? C4 ? A A 95 C4 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 99.740 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6DVK _cell.details ? _cell.formula_units_Z ? _cell.length_a 233.372 _cell.length_a_esd ? _cell.length_b 25.358 _cell.length_b_esd ? _cell.length_c 42.861 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DVK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DVK _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 39.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '40 mM sodium cacodylate (pH 5.5), 20 mM MgCl2, 2 mM cobalt hexammine, and 40% 2-methyl-2,4-pentanediol (MPD)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CMOS _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RDI CMOS_8M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-09-28 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.58954 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.58954 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 4.2.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate 39.918 _reflns.entry_id 6DVK _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.550 _reflns.d_resolution_low 115.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8270 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.010 _reflns.pdbx_Rmerge_I_obs 0.146 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.440 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.994 _reflns.pdbx_scaling_rejects 27 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.176 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 24890 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.984 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.550 2.620 ? 1.030 ? 1440 587 ? 553 94.200 ? ? ? ? 0.903 ? ? ? ? ? ? ? ? 2.604 ? ? ? ? 1.127 ? ? 1 1 0.339 ? 2.620 2.690 ? 1.160 ? 1679 593 ? 564 95.100 ? ? ? ? 0.905 ? ? ? ? ? ? ? ? 2.977 ? ? ? ? 1.096 ? ? 2 1 0.485 ? 2.690 2.770 ? 1.490 ? 1897 607 ? 603 99.300 ? ? ? ? 0.694 ? ? ? ? ? ? ? ? 3.146 ? ? ? ? 0.832 ? ? 3 1 0.579 ? 2.770 2.850 ? 1.860 ? 1647 562 ? 546 97.200 ? ? ? ? 0.619 ? ? ? ? ? ? ? ? 3.016 ? ? ? ? 0.745 ? ? 4 1 0.688 ? 2.850 2.940 ? 2.770 ? 1535 532 ? 523 98.300 ? ? ? ? 0.380 ? ? ? ? ? ? ? ? 2.935 ? ? ? ? 0.462 ? ? 5 1 0.793 ? 2.940 3.050 ? 4.120 ? 1491 536 ? 528 98.500 ? ? ? ? 0.226 ? ? ? ? ? ? ? ? 2.824 ? ? ? ? 0.277 ? ? 6 1 0.956 ? 3.050 3.160 ? 5.420 ? 1501 538 ? 525 97.600 ? ? ? ? 0.158 ? ? ? ? ? ? ? ? 2.859 ? ? ? ? 0.193 ? ? 7 1 0.969 ? 3.160 3.290 ? 6.740 ? 1418 487 ? 480 98.600 ? ? ? ? 0.139 ? ? ? ? ? ? ? ? 2.954 ? ? ? ? 0.168 ? ? 8 1 0.977 ? 3.290 3.440 ? 6.930 ? 1444 469 ? 461 98.300 ? ? ? ? 0.141 ? ? ? ? ? ? ? ? 3.132 ? ? ? ? 0.169 ? ? 9 1 0.979 ? 3.440 3.610 ? 7.710 ? 1543 482 ? 473 98.100 ? ? ? ? 0.141 ? ? ? ? ? ? ? ? 3.262 ? ? ? ? 0.167 ? ? 10 1 0.978 ? 3.610 3.800 ? 8.510 ? 1319 422 ? 417 98.800 ? ? ? ? 0.118 ? ? ? ? ? ? ? ? 3.163 ? ? ? ? 0.141 ? ? 11 1 0.985 ? 3.800 4.030 ? 9.270 ? 1225 405 ? 394 97.300 ? ? ? ? 0.106 ? ? ? ? ? ? ? ? 3.109 ? ? ? ? 0.126 ? ? 12 1 0.986 ? 4.030 4.310 ? 10.400 ? 1272 411 ? 406 98.800 ? ? ? ? 0.098 ? ? ? ? ? ? ? ? 3.133 ? ? ? ? 0.117 ? ? 13 1 0.981 ? 4.310 4.660 ? 10.950 ? 1082 346 ? 347 100.000 ? ? ? ? 0.091 ? ? ? ? ? ? ? ? 3.118 ? ? ? ? 0.109 ? ? 14 1 0.982 ? 4.660 5.100 ? 11.680 ? 1124 371 ? 360 97.000 ? ? ? ? 0.086 ? ? ? ? ? ? ? ? 3.122 ? ? ? ? 0.103 ? ? 15 1 0.985 ? 5.100 5.700 ? 12.740 ? 870 287 ? 285 99.300 ? ? ? ? 0.070 ? ? ? ? ? ? ? ? 3.053 ? ? ? ? 0.083 ? ? 16 1 0.991 ? 5.700 6.580 ? 11.300 ? 853 287 ? 286 99.700 ? ? ? ? 0.081 ? ? ? ? ? ? ? ? 2.983 ? ? ? ? 0.097 ? ? 17 1 0.991 ? 6.580 8.060 ? 12.700 ? 718 238 ? 234 98.300 ? ? ? ? 0.079 ? ? ? ? ? ? ? ? 3.068 ? ? ? ? 0.095 ? ? 18 1 0.989 ? 8.060 11.400 ? 14.420 ? 534 192 ? 182 94.800 ? ? ? ? 0.072 ? ? ? ? ? ? ? ? 2.934 ? ? ? ? 0.085 ? ? 19 1 0.988 ? 11.400 115.000 ? 16.120 ? 298 119 ? 103 86.600 ? ? ? ? 0.053 ? ? ? ? ? ? ? ? 2.893 ? ? ? ? 0.063 ? ? 20 1 0.995 ? # _refine.aniso_B[1][1] 1.7200 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0900 _refine.aniso_B[2][2] -0.6700 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] -0.9600 _refine.B_iso_max 156.910 _refine.B_iso_mean 38.4350 _refine.B_iso_min 4.960 _refine.correlation_coeff_Fo_to_Fc 0.9200 _refine.correlation_coeff_Fo_to_Fc_free 0.8800 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DVK _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.5500 _refine.ls_d_res_low 115.0000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7897 _refine.ls_number_reflns_R_free 377 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.7200 _refine.ls_percent_reflns_R_free 4.6000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2332 _refine.ls_R_factor_R_free 0.2685 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2315 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.3550 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 15.4410 _refine.overall_SU_ML 0.3250 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.5500 _refine_hist.d_res_low 115.0000 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 2025 _refine_hist.pdbx_number_residues_total 95 _refine_hist.pdbx_B_iso_mean_ligand 32.84 _refine_hist.pdbx_B_iso_mean_solvent 5.93 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2008 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 0.011 2251 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 920 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.367 1.290 3512 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.616 3.000 2236 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.095 0.200 376 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 0.020 1116 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 501 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.5500 _refine_ls_shell.d_res_low 2.6160 _refine_ls_shell.number_reflns_all 551 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 23 _refine_ls_shell.number_reflns_R_work 528 _refine_ls_shell.percent_reflns_obs 93.8700 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.4560 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.3490 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6DVK _struct.title 'Computationally designed mini tetraloop-tetraloop receptor by the RNAMake program - construct 6 (miniTTR 6)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DVK _struct_keywords.text 'Automated RNA Structure Design, Tetra-loop tetra-loop receptor, RNA motif, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 2 ? K N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6DVK _struct_ref.pdbx_db_accession 6DVK _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6DVK _struct_ref_seq.pdbx_strand_id H _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 95 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6DVK _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 95 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 95 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support SAXS _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 87 "O3'" ? ? ? 1_555 E MG . MG ? ? H A 87 H MG 104 1_555 ? ? ? ? ? ? ? 2.791 ? ? metalc2 metalc ? ? A A 87 "O2'" ? ? ? 1_555 E MG . MG ? ? H A 87 H MG 104 1_555 ? ? ? ? ? ? ? 2.251 ? ? metalc3 metalc ? ? A G 89 O6 ? ? ? 1_555 E MG . MG ? ? H G 89 H MG 104 1_555 ? ? ? ? ? ? ? 2.850 ? ? metalc4 metalc ? ? A U 90 O4 ? ? ? 1_555 E MG . MG ? ? H U 90 H MG 104 1_555 ? ? ? ? ? ? ? 2.888 ? ? metalc5 metalc ? ? J MG . MG ? ? ? 1_555 K HOH . O ? ? H MG 109 H HOH 202 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc6 metalc ? ? J MG . MG ? ? ? 1_555 K HOH . O ? ? H MG 109 H HOH 203 1_566 ? ? ? ? ? ? ? 2.180 ? ? metalc7 metalc ? ? J MG . MG ? ? ? 1_555 K HOH . O ? ? H MG 109 H HOH 205 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc8 metalc ? ? J MG . MG ? ? ? 1_555 K HOH . O ? ? H MG 109 H HOH 206 1_555 ? ? ? ? ? ? ? 2.161 ? ? metalc9 metalc ? ? J MG . MG ? ? ? 1_555 K HOH . O ? ? H MG 109 H HOH 207 1_555 ? ? ? ? ? ? ? 2.175 ? ? metalc10 metalc ? ? J MG . MG ? ? ? 1_555 K HOH . O ? ? H MG 109 H HOH 208 1_555 ? ? ? ? ? ? ? 2.174 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 94 N3 ? ? H G 1 H C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 94 O2 ? ? H G 1 H C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 94 N4 ? ? H G 1 H C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 93 N1 ? ? H U 2 H A 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 93 N6 ? ? H U 2 H A 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 92 N1 ? ? H U 3 H A 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 92 N6 ? ? H U 3 H A 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 91 N3 ? ? H G 4 H C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 91 O2 ? ? H G 4 H C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 91 N4 ? ? H G 4 H C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 90 N3 ? ? H A 5 H U 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 90 O4 ? ? H A 5 H U 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 6 N3 ? ? ? 1_555 A G 89 O6 ? ? H U 6 H G 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A U 6 O2 ? ? ? 1_555 A G 89 N1 ? ? H U 6 H G 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A A 7 N1 ? ? ? 1_555 A A 47 N6 ? ? H A 7 H A 47 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog16 hydrog ? ? A A 7 N6 ? ? ? 1_555 A A 47 N1 ? ? H A 7 H A 47 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog17 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 86 O2 ? ? H A 7 H U 86 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog18 hydrog ? ? A A 7 N7 ? ? ? 1_555 A U 86 N3 ? ? H A 7 H U 86 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog19 hydrog ? ? A G 9 N2 ? ? ? 1_555 A A 49 N3 ? ? H G 9 H A 49 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog20 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 85 N3 ? ? H G 9 H C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 85 O2 ? ? H G 9 H C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 85 N4 ? ? H G 9 H C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 84 N3 ? ? H G 10 H C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 84 O2 ? ? H G 10 H C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 84 N4 ? ? H G 10 H C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 83 N3 ? ? H A 11 H U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 83 O4 ? ? H A 11 H U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 12 N3 ? ? ? 1_555 A G 82 O6 ? ? H U 12 H G 82 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? A U 12 O2 ? ? ? 1_555 A G 82 N1 ? ? H U 12 H G 82 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog30 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 81 N1 ? ? H U 13 H A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 81 N6 ? ? H U 13 H A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 80 N1 ? ? H U 14 H A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 80 N6 ? ? H U 14 H A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 79 N3 ? ? H A 15 H U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 79 O4 ? ? H A 15 H U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 78 N1 ? ? H C 16 H G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 78 O6 ? ? H C 16 H G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 78 N2 ? ? H C 16 H G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 77 N1 ? ? H U 17 H A 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 77 N6 ? ? H U 17 H A 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 76 N1 ? ? H C 18 H G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 76 O6 ? ? H C 18 H G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 76 N2 ? ? H C 18 H G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 19 O2 ? ? ? 1_555 A C 75 N4 ? ? H C 19 H C 75 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog45 hydrog ? ? A G 20 N2 ? ? ? 1_555 A A 74 N7 ? ? H G 20 H A 74 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog46 hydrog ? ? A G 20 N3 ? ? ? 1_555 A A 74 N6 ? ? H G 20 H A 74 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog47 hydrog ? ? A A 21 N6 ? ? ? 1_555 A G 73 N3 ? ? H A 21 H G 73 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog48 hydrog ? ? A A 21 N7 ? ? ? 1_555 A G 73 N2 ? ? H A 21 H G 73 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog49 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 68 N3 ? ? H G 22 H C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 68 O2 ? ? H G 22 H C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 68 N4 ? ? H G 22 H C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 67 N3 ? ? H G 23 H C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 67 O2 ? ? H G 23 H C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 67 N4 ? ? H G 23 H C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A A 24 N1 ? ? ? 1_555 A U 66 N3 ? ? H A 24 H U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A A 24 N6 ? ? ? 1_555 A U 66 O4 ? ? H A 24 H U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 65 N3 ? ? H G 25 H C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 65 O2 ? ? H G 25 H C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 65 N4 ? ? H G 25 H C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A A 26 N1 ? ? ? 1_555 A U 64 N3 ? ? H A 26 H U 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A A 26 N6 ? ? ? 1_555 A U 64 O4 ? ? H A 26 H U 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 63 N1 ? ? H C 27 H G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 63 O6 ? ? H C 27 H G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 63 N2 ? ? H C 27 H G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 62 N3 ? ? H G 28 H C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 62 O2 ? ? H G 28 H C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 62 N4 ? ? H G 28 H C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 34 N3 ? ? ? 1_555 A G 61 N1 ? ? H C 34 H G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 34 N4 ? ? ? 1_555 A G 61 O6 ? ? H C 34 H G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 61 N2 ? ? H C 34 H G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 35 N3 ? ? ? 1_555 A G 60 N1 ? ? H C 35 H G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 35 N4 ? ? ? 1_555 A G 60 O6 ? ? H C 35 H G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 35 O2 ? ? ? 1_555 A G 60 N2 ? ? H C 35 H G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 36 N6 ? ? ? 1_555 A U 59 O4 ? ? H A 36 H U 59 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog75 hydrog ? ? A C 37 N4 ? ? ? 1_555 A G 58 O6 ? ? H C 37 H G 58 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog76 hydrog ? ? A G 38 N1 ? ? ? 1_555 A C 57 N3 ? ? H G 38 H C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 38 N2 ? ? ? 1_555 A C 57 O2 ? ? H G 38 H C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 38 O6 ? ? ? 1_555 A C 57 N4 ? ? H G 38 H C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 41 N3 ? ? ? 1_555 A A 54 N6 ? ? H C 41 H A 54 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog80 hydrog ? ? A C 41 N4 ? ? ? 1_555 A A 54 N7 ? ? H C 41 H A 54 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog81 hydrog ? ? A A 42 N6 ? ? ? 1_555 A U 53 O2 ? ? H A 42 H U 53 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog82 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 52 N3 ? ? H G 43 H C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 52 O2 ? ? H G 43 H C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 52 N4 ? ? H G 43 H C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A G 44 N1 ? ? ? 1_555 A U 51 O2 ? ? H G 44 H U 51 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog86 hydrog ? ? A G 44 O6 ? ? ? 1_555 A U 51 N3 ? ? H G 44 H U 51 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog87 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 50 N3 ? ? H G 45 H C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 50 O2 ? ? H G 45 H C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 50 N4 ? ? H G 45 H C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A G 46 N2 ? ? ? 1_555 A A 49 N7 ? ? H G 46 H A 49 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O3'" ? A A 87 ? H A 87 ? 1_555 MG ? E MG . ? H MG 104 ? 1_555 "O2'" ? A A 87 ? H A 87 ? 1_555 62.5 ? 2 "O3'" ? A A 87 ? H A 87 ? 1_555 MG ? E MG . ? H MG 104 ? 1_555 O6 ? A G 89 ? H G 89 ? 1_555 116.2 ? 3 "O2'" ? A A 87 ? H A 87 ? 1_555 MG ? E MG . ? H MG 104 ? 1_555 O6 ? A G 89 ? H G 89 ? 1_555 78.8 ? 4 "O3'" ? A A 87 ? H A 87 ? 1_555 MG ? E MG . ? H MG 104 ? 1_555 O4 ? A U 90 ? H U 90 ? 1_555 174.9 ? 5 "O2'" ? A A 87 ? H A 87 ? 1_555 MG ? E MG . ? H MG 104 ? 1_555 O4 ? A U 90 ? H U 90 ? 1_555 115.5 ? 6 O6 ? A G 89 ? H G 89 ? 1_555 MG ? E MG . ? H MG 104 ? 1_555 O4 ? A U 90 ? H U 90 ? 1_555 67.0 ? 7 O ? K HOH . ? H HOH 202 ? 1_555 MG ? J MG . ? H MG 109 ? 1_555 O ? K HOH . ? H HOH 203 ? 1_566 175.7 ? 8 O ? K HOH . ? H HOH 202 ? 1_555 MG ? J MG . ? H MG 109 ? 1_555 O ? K HOH . ? H HOH 205 ? 1_555 90.2 ? 9 O ? K HOH . ? H HOH 203 ? 1_566 MG ? J MG . ? H MG 109 ? 1_555 O ? K HOH . ? H HOH 205 ? 1_555 93.7 ? 10 O ? K HOH . ? H HOH 202 ? 1_555 MG ? J MG . ? H MG 109 ? 1_555 O ? K HOH . ? H HOH 206 ? 1_555 89.8 ? 11 O ? K HOH . ? H HOH 203 ? 1_566 MG ? J MG . ? H MG 109 ? 1_555 O ? K HOH . ? H HOH 206 ? 1_555 88.4 ? 12 O ? K HOH . ? H HOH 205 ? 1_555 MG ? J MG . ? H MG 109 ? 1_555 O ? K HOH . ? H HOH 206 ? 1_555 88.8 ? 13 O ? K HOH . ? H HOH 202 ? 1_555 MG ? J MG . ? H MG 109 ? 1_555 O ? K HOH . ? H HOH 207 ? 1_555 93.9 ? 14 O ? K HOH . ? H HOH 203 ? 1_566 MG ? J MG . ? H MG 109 ? 1_555 O ? K HOH . ? H HOH 207 ? 1_555 88.0 ? 15 O ? K HOH . ? H HOH 205 ? 1_555 MG ? J MG . ? H MG 109 ? 1_555 O ? K HOH . ? H HOH 207 ? 1_555 88.8 ? 16 O ? K HOH . ? H HOH 206 ? 1_555 MG ? J MG . ? H MG 109 ? 1_555 O ? K HOH . ? H HOH 207 ? 1_555 175.6 ? 17 O ? K HOH . ? H HOH 202 ? 1_555 MG ? J MG . ? H MG 109 ? 1_555 O ? K HOH . ? H HOH 208 ? 1_555 85.7 ? 18 O ? K HOH . ? H HOH 203 ? 1_566 MG ? J MG . ? H MG 109 ? 1_555 O ? K HOH . ? H HOH 208 ? 1_555 90.4 ? 19 O ? K HOH . ? H HOH 205 ? 1_555 MG ? J MG . ? H MG 109 ? 1_555 O ? K HOH . ? H HOH 208 ? 1_555 175.6 ? 20 O ? K HOH . ? H HOH 206 ? 1_555 MG ? J MG . ? H MG 109 ? 1_555 O ? K HOH . ? H HOH 208 ? 1_555 89.4 ? 21 O ? K HOH . ? H HOH 207 ? 1_555 MG ? J MG . ? H MG 109 ? 1_555 O ? K HOH . ? H HOH 208 ? 1_555 93.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software H MG 102 ? 1 'binding site for residue MG H 102' AC2 Software H MG 104 ? 4 'binding site for residue MG H 104' AC3 Software H MG 109 ? 6 'binding site for residue MG H 109' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 U A 8 ? U H 8 . ? 1_555 ? 2 AC2 4 A A 87 ? A H 87 . ? 1_555 ? 3 AC2 4 A A 88 ? A H 88 . ? 1_555 ? 4 AC2 4 G A 89 ? G H 89 . ? 1_555 ? 5 AC2 4 U A 90 ? U H 90 . ? 1_555 ? 6 AC3 6 HOH K . ? HOH H 202 . ? 1_555 ? 7 AC3 6 HOH K . ? HOH H 203 . ? 1_566 ? 8 AC3 6 HOH K . ? HOH H 205 . ? 1_555 ? 9 AC3 6 HOH K . ? HOH H 206 . ? 1_555 ? 10 AC3 6 HOH K . ? HOH H 207 . ? 1_555 ? 11 AC3 6 HOH K . ? HOH H 208 . ? 1_555 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CO CO CO N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 HOH O O N N 112 HOH H1 H N N 113 HOH H2 H N N 114 MG MG MG N N 115 U OP3 O N N 116 U P P N N 117 U OP1 O N N 118 U OP2 O N N 119 U "O5'" O N N 120 U "C5'" C N N 121 U "C4'" C N R 122 U "O4'" O N N 123 U "C3'" C N S 124 U "O3'" O N N 125 U "C2'" C N R 126 U "O2'" O N N 127 U "C1'" C N R 128 U N1 N N N 129 U C2 C N N 130 U O2 O N N 131 U N3 N N N 132 U C4 C N N 133 U O4 O N N 134 U C5 C N N 135 U C6 C N N 136 U HOP3 H N N 137 U HOP2 H N N 138 U "H5'" H N N 139 U "H5''" H N N 140 U "H4'" H N N 141 U "H3'" H N N 142 U "HO3'" H N N 143 U "H2'" H N N 144 U "HO2'" H N N 145 U "H1'" H N N 146 U H3 H N N 147 U H5 H N N 148 U H6 H N N 149 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6DVK 'double helix' 6DVK 'a-form double helix' 6DVK 'bulge loop' 6DVK 'mismatched base pair' 6DVK 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 94 1_555 -0.235 -0.137 0.224 -1.457 -16.076 -4.607 1 H_G1:C94_H H 1 ? H 94 ? 19 1 1 A U 2 1_555 A A 93 1_555 1.059 0.169 0.237 -1.724 -16.796 -22.088 2 H_U2:A93_H H 2 ? H 93 ? 20 1 1 A U 3 1_555 A A 92 1_555 -0.101 -0.057 0.047 -0.349 -18.314 -3.503 3 H_U3:A92_H H 3 ? H 92 ? 20 1 1 A G 4 1_555 A C 91 1_555 -0.141 -0.197 0.040 -4.185 -11.867 -3.620 4 H_G4:C91_H H 4 ? H 91 ? 19 1 1 A A 5 1_555 A U 90 1_555 0.086 -0.029 -0.031 -0.996 -16.413 -1.347 5 H_A5:U90_H H 5 ? H 90 ? 20 1 1 A U 6 1_555 A G 89 1_555 2.522 -0.656 0.177 1.230 -11.611 -2.350 6 H_U6:G89_H H 6 ? H 89 ? 28 1 1 A A 7 1_555 A A 47 1_555 1.746 1.187 -0.463 -20.756 3.626 -179.257 7 H_A7:A47_H H 7 ? H 47 ? 1 2 1 A G 9 1_555 A C 85 1_555 -0.327 -0.034 -0.178 -8.763 -10.170 2.643 8 H_G9:C85_H H 9 ? H 85 ? 19 1 1 A G 10 1_555 A C 84 1_555 -0.107 0.012 0.019 -11.954 -20.637 -3.159 9 H_G10:C84_H H 10 ? H 84 ? 19 1 1 A A 11 1_555 A U 83 1_555 -0.271 -0.124 0.124 -3.299 -13.356 2.468 10 H_A11:U83_H H 11 ? H 83 ? 20 1 1 A U 12 1_555 A G 82 1_555 2.388 -0.513 -0.098 -1.898 -10.337 0.108 11 H_U12:G82_H H 12 ? H 82 ? 28 1 1 A U 13 1_555 A A 81 1_555 0.029 -0.071 0.126 -2.611 -9.055 -1.118 12 H_U13:A81_H H 13 ? H 81 ? 20 1 1 A U 14 1_555 A A 80 1_555 -0.301 -0.088 0.107 12.313 -9.746 1.106 13 H_U14:A80_H H 14 ? H 80 ? 20 1 1 A A 15 1_555 A U 79 1_555 0.099 -0.115 0.109 15.598 -17.198 -1.901 14 H_A15:U79_H H 15 ? H 79 ? 20 1 1 A C 16 1_555 A G 78 1_555 0.098 -0.307 0.238 9.017 -15.202 0.295 15 H_C16:G78_H H 16 ? H 78 ? 19 1 1 A U 17 1_555 A A 77 1_555 0.125 -0.158 -0.426 7.510 -9.481 -4.304 16 H_U17:A77_H H 17 ? H 77 ? 20 1 1 A C 18 1_555 A G 76 1_555 0.352 -0.142 -0.270 -1.538 -1.118 -1.683 17 H_C18:G76_H H 18 ? H 76 ? 19 1 1 A C 19 1_555 A C 75 1_555 4.133 -1.657 -0.327 14.511 7.528 4.525 18 H_C19:C75_H H 19 ? H 75 ? ? 1 1 A G 20 1_555 A A 74 1_555 6.769 -4.911 0.029 32.152 -2.648 -14.433 19 H_G20:A74_H H 20 ? H 74 ? 11 10 1 A A 21 1_555 A G 73 1_555 -6.471 -4.236 1.057 -28.742 14.976 8.233 20 H_A21:G73_H H 21 ? H 73 ? 11 9 1 A G 22 1_555 A C 68 1_555 -0.230 -0.063 -0.062 2.101 -8.033 1.546 21 H_G22:C68_H H 22 ? H 68 ? 19 1 1 A G 23 1_555 A C 67 1_555 -0.561 -0.398 -0.190 -9.787 -16.831 1.075 22 H_G23:C67_H H 23 ? H 67 ? 19 1 1 A A 24 1_555 A U 66 1_555 -0.186 -0.248 0.090 -12.263 -13.379 -0.970 23 H_A24:U66_H H 24 ? H 66 ? 20 1 1 A G 25 1_555 A C 65 1_555 0.014 0.029 -0.251 -8.111 -12.939 4.818 24 H_G25:C65_H H 25 ? H 65 ? 19 1 1 A A 26 1_555 A U 64 1_555 -0.268 -0.180 0.062 1.944 -15.914 -1.463 25 H_A26:U64_H H 26 ? H 64 ? 20 1 1 A C 27 1_555 A G 63 1_555 -0.047 -0.108 0.352 1.209 -12.510 2.410 26 H_C27:G63_H H 27 ? H 63 ? 19 1 1 A G 28 1_555 A C 62 1_555 -0.122 -0.170 -0.123 -7.317 -20.426 -1.399 27 H_G28:C62_H H 28 ? H 62 ? 19 1 1 A C 34 1_555 A G 61 1_555 0.651 0.119 0.392 -22.778 11.160 -4.209 28 H_C34:G61_H H 34 ? H 61 ? 19 1 1 A C 35 1_555 A G 60 1_555 0.098 -0.175 0.811 -6.304 -4.848 -8.085 29 H_C35:G60_H H 35 ? H 60 ? 19 1 1 A A 36 1_555 A U 59 1_555 -1.236 0.500 -1.148 -12.786 -7.786 -16.509 30 H_A36:U59_H H 36 ? H 59 ? ? ? 1 A C 37 1_555 A G 58 1_555 1.260 -0.191 0.123 12.381 -13.283 -35.164 31 H_C37:G58_H H 37 ? H 58 ? ? 1 1 A G 38 1_555 A C 57 1_555 -2.031 -0.376 -0.470 -11.622 -11.026 -5.388 32 H_G38:C57_H H 38 ? H 57 ? 19 1 1 A C 41 1_555 A A 54 1_555 2.758 -0.432 -1.192 0.237 -17.832 -91.120 33 H_C41:A54_H H 41 ? H 54 ? 25 4 1 A A 42 1_555 A U 53 1_555 -6.944 -4.039 0.212 -12.329 -7.609 -3.218 34 H_A42:U53_H H 42 ? H 53 ? ? 6 1 A G 43 1_555 A C 52 1_555 -0.094 -0.068 0.172 6.322 -1.233 -3.936 35 H_G43:C52_H H 43 ? H 52 ? 19 1 1 A G 44 1_555 A U 51 1_555 -2.591 -0.654 -0.421 -6.503 -5.521 -10.555 36 H_G44:U51_H H 44 ? H 51 ? 28 1 1 A G 45 1_555 A C 50 1_555 -0.215 -0.260 -0.138 -4.552 7.582 -1.444 37 H_G45:C50_H H 45 ? H 50 ? 19 1 1 A G 46 1_555 A A 49 1_555 7.057 -4.941 1.324 14.815 0.971 -15.536 38 H_G46:A49_H H 46 ? H 49 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 94 1_555 A U 2 1_555 A A 93 1_555 -1.677 -1.520 3.402 -5.815 10.694 42.325 -3.063 1.678 3.140 14.456 7.860 43.963 1 HH_G1U2:A93C94_HH H 1 ? H 94 ? H 2 ? H 93 ? 1 A U 2 1_555 A A 93 1_555 A U 3 1_555 A A 92 1_555 0.676 -1.580 3.044 3.773 9.361 27.204 -4.949 -0.628 2.446 19.088 -7.694 28.983 2 HH_U2U3:A92A93_HH H 2 ? H 93 ? H 3 ? H 92 ? 1 A U 3 1_555 A A 92 1_555 A G 4 1_555 A C 91 1_555 0.076 -1.663 3.331 -0.068 9.150 29.158 -4.873 -0.157 2.697 17.636 0.131 30.530 3 HH_U3G4:C91A92_HH H 3 ? H 92 ? H 4 ? H 91 ? 1 A G 4 1_555 A C 91 1_555 A A 5 1_555 A U 90 1_555 0.402 -1.562 3.162 2.090 5.199 32.572 -3.570 -0.376 2.904 9.184 -3.693 33.038 4 HH_G4A5:U90C91_HH H 4 ? H 91 ? H 5 ? H 90 ? 1 A A 5 1_555 A U 90 1_555 A U 6 1_555 A G 89 1_555 0.020 -1.452 3.171 0.711 9.534 40.379 -2.989 0.042 2.773 13.583 -1.013 41.449 5 HH_A5U6:G89U90_HH H 5 ? H 90 ? H 6 ? H 89 ? 1 A U 6 1_555 A G 89 1_555 A A 7 1_555 A A 47 1_555 -2.662 -1.624 6.651 9.542 10.024 92.872 -1.480 2.173 6.265 6.887 -6.556 93.663 6 HH_U6A7:A47G89_HH H 6 ? H 89 ? H 7 ? H 47 ? 1 A G 9 1_555 A C 85 1_555 A G 10 1_555 A C 84 1_555 0.506 -2.192 3.244 3.351 9.299 29.089 -5.787 -0.363 2.483 17.874 -6.441 30.688 7 HH_G9G10:C84C85_HH H 9 ? H 85 ? H 10 ? H 84 ? 1 A G 10 1_555 A C 84 1_555 A A 11 1_555 A U 83 1_555 0.055 -1.151 3.081 -0.734 0.762 33.999 -2.082 -0.204 3.053 1.303 1.255 34.015 8 HH_G10A11:U83C84_HH H 10 ? H 84 ? H 11 ? H 83 ? 1 A A 11 1_555 A U 83 1_555 A U 12 1_555 A G 82 1_555 0.400 -1.323 3.222 3.888 2.013 43.424 -1.969 -0.173 3.183 2.713 -5.238 43.633 9 HH_A11U12:G82U83_HH H 11 ? H 83 ? H 12 ? H 82 ? 1 A U 12 1_555 A G 82 1_555 A U 13 1_555 A A 81 1_555 -1.344 -2.222 3.175 -0.602 6.219 16.701 -10.302 4.036 2.252 20.500 1.984 17.823 10 HH_U12U13:A81G82_HH H 12 ? H 82 ? H 13 ? H 81 ? 1 A U 13 1_555 A A 81 1_555 A U 14 1_555 A A 80 1_555 0.364 -1.156 2.961 -0.546 0.531 30.338 -2.304 -0.794 2.934 1.015 1.043 30.347 11 HH_U13U14:A80A81_HH H 13 ? H 81 ? H 14 ? H 80 ? 1 A U 14 1_555 A A 80 1_555 A A 15 1_555 A U 79 1_555 -0.639 -1.197 3.063 -1.204 12.966 31.577 -3.840 0.923 2.421 22.658 2.105 34.093 12 HH_U14A15:U79A80_HH H 14 ? H 80 ? H 15 ? H 79 ? 1 A A 15 1_555 A U 79 1_555 A C 16 1_555 A G 78 1_555 0.368 -1.849 3.373 -3.094 3.754 33.112 -3.828 -1.148 3.105 6.542 5.392 33.458 13 HH_A15C16:G78U79_HH H 15 ? H 79 ? H 16 ? H 78 ? 1 A C 16 1_555 A G 78 1_555 A U 17 1_555 A A 77 1_555 -0.545 -1.611 3.233 2.889 8.172 32.806 -3.977 1.364 2.709 14.163 -5.007 33.901 14 HH_C16U17:A77G78_HH H 16 ? H 78 ? H 17 ? H 77 ? 1 A U 17 1_555 A A 77 1_555 A C 18 1_555 A G 76 1_555 0.157 -1.823 3.601 -2.927 2.618 31.637 -3.833 -0.860 3.415 4.778 5.343 31.873 15 HH_U17C18:G76A77_HH H 17 ? H 77 ? H 18 ? H 76 ? 1 A C 18 1_555 A G 76 1_555 A C 19 1_555 A C 75 1_555 0.057 -1.355 2.914 0.628 -1.292 44.031 -1.697 -0.023 2.952 -1.723 -0.838 44.053 16 HH_C18C19:C75G76_HH H 18 ? H 76 ? H 19 ? H 75 ? 1 A C 19 1_555 A C 75 1_555 A G 20 1_555 A A 74 1_555 -0.270 -0.032 3.426 14.864 8.276 48.861 -0.623 1.363 3.180 9.672 -17.370 51.566 17 HH_C19G20:A74C75_HH H 19 ? H 75 ? H 20 ? H 74 ? 1 A G 20 1_555 A A 74 1_555 A A 21 1_555 A G 73 1_555 1.962 -1.669 4.623 7.961 -4.173 -9.967 12.008 17.678 1.759 19.563 37.323 -13.413 18 HH_G20A21:G73A74_HH H 20 ? H 74 ? H 21 ? H 73 ? 1 A G 22 1_555 A C 68 1_555 A G 23 1_555 A C 67 1_555 -0.456 -1.800 3.509 -1.582 7.178 35.257 -3.958 0.507 3.112 11.694 2.577 35.991 19 HH_G22G23:C67C68_HH H 22 ? H 68 ? H 23 ? H 67 ? 1 A G 23 1_555 A C 67 1_555 A A 24 1_555 A U 66 1_555 0.442 -1.933 3.226 -0.359 5.236 32.430 -4.263 -0.839 2.882 9.300 0.638 32.841 20 HH_G23A24:U66C67_HH H 23 ? H 67 ? H 24 ? H 66 ? 1 A A 24 1_555 A U 66 1_555 A G 25 1_555 A C 65 1_555 -0.335 -1.535 3.214 2.523 6.136 33.962 -3.471 0.928 2.870 10.382 -4.269 34.585 21 HH_A24G25:C65U66_HH H 24 ? H 66 ? H 25 ? H 65 ? 1 A G 25 1_555 A C 65 1_555 A A 26 1_555 A U 64 1_555 -0.431 -1.246 2.916 -3.431 6.775 28.479 -3.690 0.220 2.590 13.471 6.822 29.454 22 HH_G25A26:U64C65_HH H 25 ? H 65 ? H 26 ? H 64 ? 1 A A 26 1_555 A U 64 1_555 A C 27 1_555 A G 63 1_555 0.296 -1.448 3.251 0.794 13.603 32.671 -4.221 -0.380 2.478 22.975 -1.341 35.327 23 HH_A26C27:G63U64_HH H 26 ? H 64 ? H 27 ? H 63 ? 1 A C 27 1_555 A G 63 1_555 A G 28 1_555 A C 62 1_555 0.646 -1.955 3.358 2.820 13.033 30.299 -5.466 -0.697 2.387 23.554 -5.097 33.040 24 HH_C27G28:C62G63_HH H 27 ? H 63 ? H 28 ? H 62 ? 1 A C 34 1_555 A G 61 1_555 A C 35 1_555 A G 60 1_555 -0.669 -2.264 2.724 -3.043 -1.413 30.546 -4.036 0.751 2.875 -2.671 5.755 30.726 25 HH_C34C35:G60G61_HH H 34 ? H 61 ? H 35 ? H 60 ? 1 A C 35 1_555 A G 60 1_555 A A 36 1_555 A U 59 1_555 -1.270 -1.331 3.386 14.132 3.703 27.650 -3.124 4.842 2.290 7.150 -27.288 31.206 26 HH_C35A36:U59G60_HH H 35 ? H 60 ? H 36 ? H 59 ? 1 A A 36 1_555 A U 59 1_555 A C 37 1_555 A G 58 1_555 -0.926 -1.877 2.871 -14.078 12.895 42.287 -3.325 0.161 2.408 16.883 18.431 46.216 27 HH_A36C37:G58U59_HH H 36 ? H 59 ? H 37 ? H 58 ? 1 A C 37 1_555 A G 58 1_555 A G 38 1_555 A C 57 1_555 1.195 -2.545 3.700 5.769 10.671 20.225 -9.796 -1.003 2.332 27.429 -14.829 23.552 28 HH_C37G38:C57G58_HH H 37 ? H 58 ? H 38 ? H 57 ? 1 A C 41 1_555 A A 54 1_555 A A 42 1_555 A U 53 1_555 5.523 -0.645 3.446 -0.937 11.090 1.967 -15.816 -29.104 -0.490 79.722 6.734 11.301 29 HH_C41A42:U53A54_HH H 41 ? H 54 ? H 42 ? H 53 ? 1 A A 42 1_555 A U 53 1_555 A G 43 1_555 A C 52 1_555 -0.451 -0.805 2.945 -2.716 4.633 61.616 -0.976 0.326 2.899 4.513 2.646 61.827 30 HH_A42G43:C52U53_HH H 42 ? H 53 ? H 43 ? H 52 ? 1 A G 43 1_555 A C 52 1_555 A G 44 1_555 A U 51 1_555 0.089 -2.682 3.688 1.856 3.448 16.994 -11.067 0.902 3.078 11.470 -6.174 17.436 31 HH_G43G44:U51C52_HH H 43 ? H 52 ? H 44 ? H 51 ? 1 A G 44 1_555 A U 51 1_555 A G 45 1_555 A C 50 1_555 0.165 -1.942 3.288 -3.200 3.267 43.222 -2.934 -0.528 3.121 4.420 4.329 43.452 32 HH_G44G45:C50U51_HH H 44 ? H 51 ? H 45 ? H 50 ? 1 A G 45 1_555 A C 50 1_555 A G 46 1_555 A A 49 1_555 -1.999 -0.948 2.695 -3.079 11.765 54.685 -1.561 1.988 2.557 12.632 3.306 55.919 33 HH_G45G46:A49C50_HH H 45 ? H 50 ? H 46 ? H 49 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM118070 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM100953 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM112294 3 # _atom_sites.entry_id 6DVK _atom_sites.fract_transf_matrix[1][1] 0.004285 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000736 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.039435 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023673 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CO MG N O P # loop_