HEADER TRANSFERASE/TRANSFERASE INHIBITOR 25-JUN-18 6DVR TITLE CRYSTAL STRUCTURE OF HUMAN CARM1 WITH (R)-SKI-72 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-ARGININE METHYLTRANSFERASE CARM1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: COACTIVATOR-ASSOCIATED ARGININE METHYLTRANSFERASE 1,PROTEIN COMPND 5 ARGININE N-METHYLTRANSFERASE 4; COMPND 6 EC: 2.1.1.319; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CARM1, PRMT4; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFBOH-MHL KEYWDS CARM1, PRMT4, SKI-72 INHIBITOR, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,H.ZENG,A.HUTCHINSON,A.SEITOVA,M.LUO,X.C.CAI,W.KE,J.WANG,C.SHI, AUTHOR 2 W.ZHENG,J.P.LEE,G.IBANEZ,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 3 P.J.BROWN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 11-OCT-23 6DVR 1 REMARK REVDAT 1 25-JUL-18 6DVR 0 JRNL AUTH H.ZENG,A.DONG,A.HUTCHINSON,A.SEITOVA,M.LUO,X.C.CAI,W.KE, JRNL AUTH 2 J.WANG,C.SHI,W.ZHENG,J.P.LEE,G.IBANEZ,C.BOUNTRA, JRNL AUTH 3 C.H.ARROWSMITH,A.M.EDWARDS,P.J.BROWN, JRNL AUTH 4 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF HUMAN CARM1 WITH (R)-SKI-72 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 110906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1658 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8095 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5275 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 405 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.572 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5807 ; 0.006 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 5114 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7915 ; 1.177 ; 1.734 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11959 ; 0.425 ; 1.728 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 726 ; 6.263 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;33.163 ;20.558 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 824 ;11.904 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.850 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 749 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6843 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1189 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6DVR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000234936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97890 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112857 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.97700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IKP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 M NH4SO4, 0.1 M REMARK 280 HEPES PH7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.18300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.28950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 103.68750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.18300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.28950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 103.68750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.18300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.28950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 103.68750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.18300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.28950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 103.68750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 91940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -148.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -74.36600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -74.36600 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 146 REMARK 465 VAL A 147 REMARK 465 PRO A 485 REMARK 465 GLY A 486 REMARK 465 SER A 487 REMARK 465 HIS A 488 REMARK 465 TYR A 489 REMARK 465 ALA B 146 REMARK 465 VAL B 147 REMARK 465 GLY B 478 REMARK 465 THR B 479 REMARK 465 THR B 480 REMARK 465 PRO B 481 REMARK 465 SER B 482 REMARK 465 PRO B 483 REMARK 465 PRO B 484 REMARK 465 PRO B 485 REMARK 465 GLY B 486 REMARK 465 SER B 487 REMARK 465 HIS B 488 REMARK 465 TYR B 489 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 148 CG CD OE1 NE2 REMARK 470 GLN A 220 CG CD OE1 NE2 REMARK 470 LYS A 227 CE NZ REMARK 470 LYS A 241 CE NZ REMARK 470 LYS A 351 CD CE NZ REMARK 470 GLU A 361 OE1 OE2 REMARK 470 LYS A 363 CD CE NZ REMARK 470 LYS A 375 CD CE NZ REMARK 470 LYS A 444 CD CE NZ REMARK 470 ARG A 445 NE CZ NH1 NH2 REMARK 470 THR A 480 OG1 CG2 REMARK 470 GLN B 148 CG CD OE1 NE2 REMARK 470 GLN B 151 CD OE1 NE2 REMARK 470 LYS B 186 NZ REMARK 470 LYS B 241 CE NZ REMARK 470 GLN B 301 OE1 NE2 REMARK 470 LYS B 351 CE NZ REMARK 470 GLU B 361 CD OE1 OE2 REMARK 470 LYS B 363 CD CE NZ REMARK 470 LYS B 444 CD CE NZ REMARK 470 ARG B 445 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 446 CG CD OE1 NE2 REMARK 470 LYS B 462 CD CE NZ REMARK 470 LEU B 467 CG CD1 CD2 REMARK 470 LYS B 470 NZ REMARK 470 THR B 477 OG1 CG2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG B 234 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 234 CA ARG B 234 CB 0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 168 -70.84 -67.98 REMARK 500 LEU A 263 -53.90 70.44 REMARK 500 GLU A 266 -21.20 89.61 REMARK 500 ASP A 299 82.33 -157.00 REMARK 500 TYR A 416 -139.85 51.36 REMARK 500 LEU B 263 -53.94 70.05 REMARK 500 GLU B 266 -22.35 91.92 REMARK 500 ASP B 299 84.39 -160.89 REMARK 500 SER B 317 70.02 -155.17 REMARK 500 ASP B 341 -171.60 -173.96 REMARK 500 TYR B 416 -140.84 52.97 REMARK 500 ARG B 445 32.40 -92.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 174 0.09 SIDE CHAIN REMARK 500 ARG B 234 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 823 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 824 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH B 781 DISTANCE = 6.33 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P15 A 502 REMARK 610 P15 B 502 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HDG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P15 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HDG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P15 B 502 DBREF 6DVR A 146 489 UNP Q86X55 CARM1_HUMAN 146 489 DBREF 6DVR B 146 489 UNP Q86X55 CARM1_HUMAN 146 489 SEQRES 1 A 344 ALA VAL GLN TYR PHE GLN PHE TYR GLY TYR LEU SER GLN SEQRES 2 A 344 GLN GLN ASN MET MET GLN ASP TYR VAL ARG THR GLY THR SEQRES 3 A 344 TYR GLN ARG ALA ILE LEU GLN ASN HIS THR ASP PHE LYS SEQRES 4 A 344 ASP LYS ILE VAL LEU ASP VAL GLY CYS GLY SER GLY ILE SEQRES 5 A 344 LEU SER PHE PHE ALA ALA GLN ALA GLY ALA ARG LYS ILE SEQRES 6 A 344 TYR ALA VAL GLU ALA SER THR MET ALA GLN HIS ALA GLU SEQRES 7 A 344 VAL LEU VAL LYS SER ASN ASN LEU THR ASP ARG ILE VAL SEQRES 8 A 344 VAL ILE PRO GLY LYS VAL GLU GLU VAL SER LEU PRO GLU SEQRES 9 A 344 GLN VAL ASP ILE ILE ILE SER GLU PRO MET GLY TYR MET SEQRES 10 A 344 LEU PHE ASN GLU ARG MET LEU GLU SER TYR LEU HIS ALA SEQRES 11 A 344 LYS LYS TYR LEU LYS PRO SER GLY ASN MET PHE PRO THR SEQRES 12 A 344 ILE GLY ASP VAL HIS LEU ALA PRO PHE THR ASP GLU GLN SEQRES 13 A 344 LEU TYR MET GLU GLN PHE THR LYS ALA ASN PHE TRP TYR SEQRES 14 A 344 GLN PRO SER PHE HIS GLY VAL ASP LEU SER ALA LEU ARG SEQRES 15 A 344 GLY ALA ALA VAL ASP GLU TYR PHE ARG GLN PRO VAL VAL SEQRES 16 A 344 ASP THR PHE ASP ILE ARG ILE LEU MET ALA LYS SER VAL SEQRES 17 A 344 LYS TYR THR VAL ASN PHE LEU GLU ALA LYS GLU GLY ASP SEQRES 18 A 344 LEU HIS ARG ILE GLU ILE PRO PHE LYS PHE HIS MET LEU SEQRES 19 A 344 HIS SER GLY LEU VAL HIS GLY LEU ALA PHE TRP PHE ASP SEQRES 20 A 344 VAL ALA PHE ILE GLY SER ILE MET THR VAL TRP LEU SER SEQRES 21 A 344 THR ALA PRO THR GLU PRO LEU THR HIS TRP TYR GLN VAL SEQRES 22 A 344 ARG CYS LEU PHE GLN SER PRO LEU PHE ALA LYS ALA GLY SEQRES 23 A 344 ASP THR LEU SER GLY THR CYS LEU LEU ILE ALA ASN LYS SEQRES 24 A 344 ARG GLN SER TYR ASP ILE SER ILE VAL ALA GLN VAL ASP SEQRES 25 A 344 GLN THR GLY SER LYS SER SER ASN LEU LEU ASP LEU LYS SEQRES 26 A 344 ASN PRO PHE PHE ARG TYR THR GLY THR THR PRO SER PRO SEQRES 27 A 344 PRO PRO GLY SER HIS TYR SEQRES 1 B 344 ALA VAL GLN TYR PHE GLN PHE TYR GLY TYR LEU SER GLN SEQRES 2 B 344 GLN GLN ASN MET MET GLN ASP TYR VAL ARG THR GLY THR SEQRES 3 B 344 TYR GLN ARG ALA ILE LEU GLN ASN HIS THR ASP PHE LYS SEQRES 4 B 344 ASP LYS ILE VAL LEU ASP VAL GLY CYS GLY SER GLY ILE SEQRES 5 B 344 LEU SER PHE PHE ALA ALA GLN ALA GLY ALA ARG LYS ILE SEQRES 6 B 344 TYR ALA VAL GLU ALA SER THR MET ALA GLN HIS ALA GLU SEQRES 7 B 344 VAL LEU VAL LYS SER ASN ASN LEU THR ASP ARG ILE VAL SEQRES 8 B 344 VAL ILE PRO GLY LYS VAL GLU GLU VAL SER LEU PRO GLU SEQRES 9 B 344 GLN VAL ASP ILE ILE ILE SER GLU PRO MET GLY TYR MET SEQRES 10 B 344 LEU PHE ASN GLU ARG MET LEU GLU SER TYR LEU HIS ALA SEQRES 11 B 344 LYS LYS TYR LEU LYS PRO SER GLY ASN MET PHE PRO THR SEQRES 12 B 344 ILE GLY ASP VAL HIS LEU ALA PRO PHE THR ASP GLU GLN SEQRES 13 B 344 LEU TYR MET GLU GLN PHE THR LYS ALA ASN PHE TRP TYR SEQRES 14 B 344 GLN PRO SER PHE HIS GLY VAL ASP LEU SER ALA LEU ARG SEQRES 15 B 344 GLY ALA ALA VAL ASP GLU TYR PHE ARG GLN PRO VAL VAL SEQRES 16 B 344 ASP THR PHE ASP ILE ARG ILE LEU MET ALA LYS SER VAL SEQRES 17 B 344 LYS TYR THR VAL ASN PHE LEU GLU ALA LYS GLU GLY ASP SEQRES 18 B 344 LEU HIS ARG ILE GLU ILE PRO PHE LYS PHE HIS MET LEU SEQRES 19 B 344 HIS SER GLY LEU VAL HIS GLY LEU ALA PHE TRP PHE ASP SEQRES 20 B 344 VAL ALA PHE ILE GLY SER ILE MET THR VAL TRP LEU SER SEQRES 21 B 344 THR ALA PRO THR GLU PRO LEU THR HIS TRP TYR GLN VAL SEQRES 22 B 344 ARG CYS LEU PHE GLN SER PRO LEU PHE ALA LYS ALA GLY SEQRES 23 B 344 ASP THR LEU SER GLY THR CYS LEU LEU ILE ALA ASN LYS SEQRES 24 B 344 ARG GLN SER TYR ASP ILE SER ILE VAL ALA GLN VAL ASP SEQRES 25 B 344 GLN THR GLY SER LYS SER SER ASN LEU LEU ASP LEU LYS SEQRES 26 B 344 ASN PRO PHE PHE ARG TYR THR GLY THR THR PRO SER PRO SEQRES 27 B 344 PRO PRO GLY SER HIS TYR HET HDG A 501 45 HET P15 A 502 19 HET UNX A 503 1 HET UNX A 504 1 HET UNX A 505 1 HET UNX A 506 1 HET HDG B 501 45 HET P15 B 502 14 HET UNX B 503 1 HET UNX B 504 1 HETNAM HDG (2R,5S)-2-AMINO-6-[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9- HETNAM 2 HDG YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]-5- HETNAM 3 HDG [(BENZYLAMINO)METHYL]-N-[2-(4-METHOXYPHENYL) HETNAM 4 HDG ETHYL]HEXANAMIDE (NON-PREFERRED NAME) HETNAM P15 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL HETNAM UNX UNKNOWN ATOM OR ION HETSYN HDG (R)-SKI-72 FORMUL 3 HDG 2(C32 H42 N8 O5) FORMUL 4 P15 2(C13 H28 O7) FORMUL 5 UNX 6(X) FORMUL 13 HOH *405(H2 O) HELIX 1 AA1 GLN A 148 GLY A 154 1 7 HELIX 2 AA2 TYR A 155 GLN A 164 1 10 HELIX 3 AA3 ASP A 165 GLN A 178 1 14 HELIX 4 AA4 ASN A 179 PHE A 183 5 5 HELIX 5 AA5 GLY A 196 ALA A 205 1 10 HELIX 6 AA6 THR A 217 ASN A 229 1 13 HELIX 7 AA7 ARG A 267 ALA A 275 1 9 HELIX 8 AA8 ASP A 299 ASN A 311 1 13 HELIX 9 AA9 PHE A 312 TYR A 314 5 3 HELIX 10 AB1 SER A 317 VAL A 321 5 5 HELIX 11 AB2 LEU A 323 ALA A 325 5 3 HELIX 12 AB3 LEU A 326 ARG A 336 1 11 HELIX 13 AB4 ASP A 344 LEU A 348 5 5 HELIX 14 AB5 LYS A 363 LEU A 367 5 5 HELIX 15 AB6 TYR B 149 TYR B 153 1 5 HELIX 16 AB7 TYR B 155 GLN B 164 1 10 HELIX 17 AB8 ASP B 165 ASN B 179 1 15 HELIX 18 AB9 HIS B 180 PHE B 183 5 4 HELIX 19 AC1 GLY B 196 ALA B 205 1 10 HELIX 20 AC2 THR B 217 ASN B 229 1 13 HELIX 21 AC3 ARG B 267 ALA B 275 1 9 HELIX 22 AC4 ASP B 299 ASN B 311 1 13 HELIX 23 AC5 PHE B 312 GLN B 315 5 4 HELIX 24 AC6 SER B 317 VAL B 321 5 5 HELIX 25 AC7 LEU B 323 ALA B 325 5 3 HELIX 26 AC8 LEU B 326 ARG B 336 1 11 HELIX 27 AC9 ASP B 344 LEU B 348 5 5 HELIX 28 AD1 LYS B 363 LEU B 367 5 5 SHEET 1 AA1 5 ILE A 235 PRO A 239 0 SHEET 2 AA1 5 LYS A 209 GLU A 214 1 N ILE A 210 O VAL A 236 SHEET 3 AA1 5 ILE A 187 VAL A 191 1 N ASP A 190 O TYR A 211 SHEET 4 AA1 5 VAL A 251 SER A 256 1 O ILE A 255 N LEU A 189 SHEET 5 AA1 5 LEU A 279 PHE A 286 1 O LYS A 280 N VAL A 251 SHEET 1 AA2 4 VAL A 353 ASN A 358 0 SHEET 2 AA2 4 ILE A 289 PHE A 297 -1 N VAL A 292 O TYR A 355 SHEET 3 AA2 4 GLY A 382 ILE A 396 -1 O ALA A 388 N ALA A 295 SHEET 4 AA2 4 THR A 401 SER A 405 -1 O VAL A 402 N PHE A 395 SHEET 1 AA3 6 VAL A 353 ASN A 358 0 SHEET 2 AA3 6 ILE A 289 PHE A 297 -1 N VAL A 292 O TYR A 355 SHEET 3 AA3 6 GLY A 382 ILE A 396 -1 O ALA A 388 N ALA A 295 SHEET 4 AA3 6 GLN A 417 ALA A 428 -1 O PHE A 422 N HIS A 385 SHEET 5 AA3 6 VAL A 339 ASP A 341 -1 N VAL A 339 O ARG A 419 SHEET 6 AA3 6 PHE A 473 PHE A 474 1 O PHE A 473 N VAL A 340 SHEET 1 AA4 4 ARG A 369 HIS A 377 0 SHEET 2 AA4 4 THR A 433 ASN A 443 -1 O CYS A 438 N ILE A 372 SHEET 3 AA4 4 SER A 447 VAL A 456 -1 O ASP A 449 N ILE A 441 SHEET 4 AA4 4 LYS A 462 ASP A 468 -1 O ASN A 465 N ILE A 452 SHEET 1 AA5 5 ILE B 235 PRO B 239 0 SHEET 2 AA5 5 LYS B 209 GLU B 214 1 N ILE B 210 O VAL B 236 SHEET 3 AA5 5 ILE B 187 VAL B 191 1 N VAL B 188 O TYR B 211 SHEET 4 AA5 5 VAL B 251 SER B 256 1 O ILE B 255 N LEU B 189 SHEET 5 AA5 5 LEU B 279 PHE B 286 1 O LYS B 280 N VAL B 251 SHEET 1 AA6 4 VAL B 353 ASN B 358 0 SHEET 2 AA6 4 ILE B 289 PHE B 297 -1 N VAL B 292 O TYR B 355 SHEET 3 AA6 4 GLY B 382 ILE B 396 -1 O ALA B 388 N ALA B 295 SHEET 4 AA6 4 THR B 401 SER B 405 -1 O VAL B 402 N PHE B 395 SHEET 1 AA7 6 VAL B 353 ASN B 358 0 SHEET 2 AA7 6 ILE B 289 PHE B 297 -1 N VAL B 292 O TYR B 355 SHEET 3 AA7 6 GLY B 382 ILE B 396 -1 O ALA B 388 N ALA B 295 SHEET 4 AA7 6 GLN B 417 ALA B 428 -1 O LEU B 426 N VAL B 384 SHEET 5 AA7 6 VAL B 339 ASP B 341 -1 N VAL B 339 O ARG B 419 SHEET 6 AA7 6 PHE B 473 PHE B 474 1 O PHE B 473 N VAL B 340 SHEET 1 AA8 4 ARG B 369 HIS B 377 0 SHEET 2 AA8 4 THR B 433 ALA B 442 -1 O CYS B 438 N ILE B 372 SHEET 3 AA8 4 TYR B 448 VAL B 456 -1 O GLN B 455 N SER B 435 SHEET 4 AA8 4 LYS B 462 ASP B 468 -1 O SER B 463 N ALA B 454 CISPEP 1 PHE A 286 PRO A 287 0 6.58 CISPEP 2 PHE B 286 PRO B 287 0 9.45 SITE 1 AC1 26 TYR A 149 PHE A 150 PHE A 152 TYR A 153 SITE 2 AC1 26 GLN A 158 GLN A 159 ASN A 161 ARG A 168 SITE 3 AC1 26 THR A 169 GLY A 192 LEU A 198 GLU A 214 SITE 4 AC1 26 ALA A 215 GLY A 240 LYS A 241 VAL A 242 SITE 5 AC1 26 GLU A 243 GLU A 257 MET A 259 GLU A 266 SITE 6 AC1 26 MET A 268 SER A 271 P15 A 502 HOH A 624 SITE 7 AC1 26 HOH A 657 HOH A 740 SITE 1 AC2 8 ASN A 161 ARG A 168 TYR A 261 HIS A 414 SITE 2 AC2 8 TRP A 415 HDG A 501 HOH A 631 HOH A 666 SITE 1 AC3 25 TYR B 149 PHE B 150 PHE B 152 TYR B 153 SITE 2 AC3 25 GLN B 158 GLN B 159 ASN B 161 ARG B 168 SITE 3 AC3 25 GLY B 192 LEU B 198 GLU B 214 ALA B 215 SITE 4 AC3 25 GLY B 240 LYS B 241 VAL B 242 GLU B 243 SITE 5 AC3 25 GLU B 257 MET B 259 GLU B 266 MET B 268 SITE 6 AC3 25 SER B 271 P15 B 502 HOH B 616 HOH B 694 SITE 7 AC3 25 HOH B 699 SITE 1 AC4 7 ASN B 161 ARG B 168 TYR B 261 HIS B 414 SITE 2 AC4 7 TRP B 415 HDG B 501 HOH B 707 CRYST1 74.366 98.579 207.375 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013447 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004822 0.00000