HEADER IMMUNE SYSTEM/AGONIST 28-JUN-18 6DXG TITLE AMIDOBENZIMIDAZOLE (ABZI) STING AGONISTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: STIMULATOR OF INTERFERON PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: STING, LOC340061, HCG_1782396; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21STAR(DE3) KEYWDS AGONIST, STING (STIMULATOR OF INTERFERON GENES), TRANSMEMBRANE KEYWDS 2 PROTEIN 173 (TMEM173), IMMUNE SYSTEM, IMMUNE SYSTEM-INHIBITOR KEYWDS 3 COMPLEX, IMMUNE SYSTEM-AGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.O.CONCHA REVDAT 4 11-OCT-23 6DXG 1 LINK REVDAT 3 02-JAN-19 6DXG 1 JRNL REVDAT 2 21-NOV-18 6DXG 1 JRNL REVDAT 1 07-NOV-18 6DXG 0 JRNL AUTH J.M.RAMANJULU,G.S.PESIRIDIS,J.YANG,N.CONCHA,R.SINGHAUS, JRNL AUTH 2 S.Y.ZHANG,J.L.TRAN,P.MOORE,S.LEHMANN,H.C.EBERL,M.MUELBAIER, JRNL AUTH 3 J.L.SCHNECK,J.CLEMENS,M.ADAM,J.MEHLMANN,J.ROMANO,A.MORALES, JRNL AUTH 4 J.KANG,L.LEISTER,T.L.GRAYBILL,A.K.CHARNLEY,G.YE,N.NEVINS, JRNL AUTH 5 K.BEHNIA,A.I.WOLF,V.KASPARCOVA,K.NURSE,L.WANG,Y.LI,M.KLEIN, JRNL AUTH 6 C.B.HOPSON,J.GUSS,M.BANTSCHEFF,G.BERGAMINI,M.A.REILLY, JRNL AUTH 7 Y.LIAN,K.J.DUFFY,J.ADAMS,K.P.FOLEY,P.J.GOUGH,R.W.MARQUIS, JRNL AUTH 8 J.SMOTHERS,A.HOOS,J.BERTIN JRNL TITL DESIGN OF AMIDOBENZIMIDAZOLE STING RECEPTOR AGONISTS WITH JRNL TITL 2 SYSTEMIC ACTIVITY. JRNL REF NATURE V. 564 439 2018 JRNL REFN ESSN 1476-4687 JRNL PMID 30405246 JRNL DOI 10.1038/S41586-018-0705-Y REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 21242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7703 - 3.8070 0.99 2693 142 0.1719 0.2279 REMARK 3 2 3.8070 - 3.0228 1.00 2620 138 0.1913 0.2140 REMARK 3 3 3.0228 - 2.6410 1.00 2584 136 0.2040 0.2257 REMARK 3 4 2.6410 - 2.3997 1.00 2576 136 0.2018 0.2210 REMARK 3 5 2.3997 - 2.2277 1.00 2575 136 0.2043 0.2682 REMARK 3 6 2.2277 - 2.0964 1.00 2556 134 0.2151 0.2806 REMARK 3 7 2.0964 - 1.9915 0.96 2416 127 0.2336 0.3069 REMARK 3 8 1.9915 - 1.9048 0.84 2160 113 0.2829 0.3355 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1467 REMARK 3 ANGLE : 0.909 1998 REMARK 3 CHIRALITY : 0.051 221 REMARK 3 PLANARITY : 0.006 260 REMARK 3 DIHEDRAL : 13.218 874 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -13.1703 25.0206 -9.3296 REMARK 3 T TENSOR REMARK 3 T11: 0.2877 T22: 0.2569 REMARK 3 T33: 0.2852 T12: -0.0670 REMARK 3 T13: -0.0055 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 2.8327 L22: 1.2769 REMARK 3 L33: 2.7683 L12: -1.5468 REMARK 3 L13: -1.9728 L23: 0.8363 REMARK 3 S TENSOR REMARK 3 S11: 0.0546 S12: -0.1552 S13: 0.2140 REMARK 3 S21: 0.0433 S22: 0.0777 S23: -0.1083 REMARK 3 S31: -0.0483 S32: -0.1667 S33: -0.1029 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DXG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000235388. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21273 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.76700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4EMU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13-15% PEG8000, 0.07M CACODYLATE, PH REMARK 280 6.8, 0.8M CALCIUM ACETATE, AND 20% GLYCEROL, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.36750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.36750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.80350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.11050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.80350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.11050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.36750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.80350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.11050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.36750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.80350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.11050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -36.36750 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 504 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 229 REMARK 465 GLY A 230 REMARK 465 ASP A 231 REMARK 465 ARG A 232 REMARK 465 ALA A 233 REMARK 465 GLY A 234 REMARK 465 ILE A 235 REMARK 465 LYS A 236 REMARK 465 ASP A 237 REMARK 465 ARG A 238 REMARK 465 ASP A 319 REMARK 465 ASP A 320 REMARK 465 SER A 321 REMARK 465 SER A 322 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 153 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 176 CG CD OE1 NE2 REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 191 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 228 CG CD OE1 NE2 REMARK 470 VAL A 239 CG1 CG2 REMARK 470 GLN A 252 CG CD OE1 NE2 REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 470 GLU A 296 CD OE1 OE2 REMARK 470 GLU A 304 CG CD OE1 OE2 REMARK 470 GLN A 306 CG CD OE1 NE2 REMARK 470 GLU A 340 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 186 NH1 ARG A 253 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 284 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 167 -64.05 -141.19 REMARK 500 LEU A 189 -72.60 -94.74 REMARK 500 ARG A 191 27.60 49.32 REMARK 500 ASP A 216 118.85 -167.20 REMARK 500 GLU A 304 -39.01 80.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 205 OD2 REMARK 620 2 GLU A 316 OE1 79.1 REMARK 620 3 GLU A 316 OE2 109.6 51.1 REMARK 620 4 VAL A 341 O 111.0 35.7 54.0 REMARK 620 5 HOH A 502 O 101.9 81.3 113.2 60.0 REMARK 620 6 HOH A 546 O 92.1 117.2 75.9 129.1 158.9 REMARK 620 7 HOH A 548 O 173.6 106.3 76.7 73.4 75.9 88.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HGJ A 402 DBREF1 6DXG A 153 343 UNP A0A2R3XZB7_HUMAN DBREF2 6DXG A A0A2R3XZB7 153 343 SEQRES 1 A 191 PHE ASN VAL ALA HIS GLY LEU ALA TRP SER TYR TYR ILE SEQRES 2 A 191 GLY TYR LEU ARG LEU ILE LEU PRO GLU LEU GLN ALA ARG SEQRES 3 A 191 ILE ARG THR TYR ASN GLN HIS TYR ASN ASN LEU LEU ARG SEQRES 4 A 191 GLY ALA VAL SER GLN ARG LEU TYR ILE LEU LEU PRO LEU SEQRES 5 A 191 ASP CYS GLY VAL PRO ASP ASN LEU SER MET ALA ASP PRO SEQRES 6 A 191 ASN ILE ARG PHE LEU ASP LYS LEU PRO GLN GLN THR GLY SEQRES 7 A 191 ASP ARG ALA GLY ILE LYS ASP ARG VAL TYR SER ASN SER SEQRES 8 A 191 ILE TYR GLU LEU LEU GLU ASN GLY GLN ARG ALA GLY THR SEQRES 9 A 191 CYS VAL LEU GLU TYR ALA THR PRO LEU GLN THR LEU PHE SEQRES 10 A 191 ALA MET SER GLN TYR SER GLN ALA GLY PHE SER ARG GLU SEQRES 11 A 191 ASP ARG LEU GLU GLN ALA LYS LEU PHE CYS ARG THR LEU SEQRES 12 A 191 GLU ASP ILE LEU ALA ASP ALA PRO GLU SER GLN ASN ASN SEQRES 13 A 191 CYS ARG LEU ILE ALA TYR GLN GLU PRO ALA ASP ASP SER SEQRES 14 A 191 SER PHE SER LEU SER GLN GLU VAL LEU ARG HIS LEU ARG SEQRES 15 A 191 GLN GLU GLU LYS GLU GLU VAL THR VAL HET CA A 401 1 HET HGJ A 402 56 HETNAM CA CALCIUM ION HETNAM HGJ 2-[(1-ETHYL-3-METHYL-1H-PYRAZOLE-5-CARBONYL)AMINO]-1- HETNAM 2 HGJ [(2R)-2-HYDROXY-2-PHENYLETHYL]-1H-BENZIMIDAZOLE-5- HETNAM 3 HGJ CARBOXAMIDE FORMUL 2 CA CA 2+ FORMUL 3 HGJ C23 H24 N6 O3 FORMUL 4 HOH *64(H2 O) HELIX 1 AA1 ASN A 154 TYR A 167 1 14 HELIX 2 AA2 TYR A 167 ARG A 191 1 25 HELIX 3 AA3 ASN A 211 ASP A 216 1 6 HELIX 4 AA4 THR A 263 TYR A 274 1 12 HELIX 5 AA5 SER A 275 GLY A 278 5 4 HELIX 6 AA6 SER A 280 ASP A 301 1 22 HELIX 7 AA7 GLU A 304 ASN A 308 1 5 HELIX 8 AA8 SER A 324 VAL A 343 1 20 SHEET 1 AA1 5 ILE A 219 LYS A 224 0 SHEET 2 AA1 5 SER A 243 GLU A 249 -1 O ILE A 244 N ASP A 223 SHEET 3 AA1 5 GLN A 252 TYR A 261 -1 O ALA A 254 N LEU A 247 SHEET 4 AA1 5 LEU A 198 PRO A 203 1 N LEU A 201 O GLU A 260 SHEET 5 AA1 5 CYS A 309 TYR A 314 1 O ILE A 312 N ILE A 200 LINK OD2 ASP A 205 CA CA A 401 1555 1555 2.42 LINK OE1 GLU A 316 CA CA A 401 1555 1555 2.48 LINK OE2 GLU A 316 CA CA A 401 1555 1555 2.61 LINK O VAL A 341 CA CA A 401 1555 6455 2.29 LINK CA CA A 401 O HOH A 502 1555 1555 2.52 LINK CA CA A 401 O HOH A 546 1555 1555 2.44 LINK CA CA A 401 O HOH A 548 1555 1555 2.47 SITE 1 AC1 6 ASP A 205 GLU A 316 VAL A 341 HOH A 502 SITE 2 AC1 6 HOH A 546 HOH A 548 SITE 1 AC2 10 LEU A 159 SER A 162 TYR A 163 TYR A 167 SITE 2 AC2 10 TYR A 240 SER A 241 THR A 263 PRO A 264 SITE 3 AC2 10 HOH A 507 HOH A 534 CRYST1 81.607 92.221 72.735 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012254 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013749 0.00000