HEADER METAL BINDING PROTEIN 01-JUL-18 6DYB TITLE METAL-FREE STRUCTURE OF THE ENGINEERED CYT CB562 VARIANT, CH3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE CYTOCHROME B562; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: CYTOCHROME B-562; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CYBC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DESIGNED PROTEIN, 4-HELIX BUNDLE, ELECTRON TRANSPORT, METAL BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.A.TEZCAN,J.RITTLE REVDAT 4 11-OCT-23 6DYB 1 LINK REVDAT 3 27-NOV-19 6DYB 1 REMARK REVDAT 2 08-MAY-19 6DYB 1 JRNL REVDAT 1 24-APR-19 6DYB 0 JRNL AUTH J.RITTLE,M.J.FIELD,M.T.GREEN,F.A.TEZCAN JRNL TITL AN EFFICIENT, STEP-ECONOMICAL STRATEGY FOR THE DESIGN OF JRNL TITL 2 FUNCTIONAL METALLOPROTEINS. JRNL REF NAT.CHEM. V. 11 434 2019 JRNL REFN ESSN 1755-4349 JRNL PMID 30778140 JRNL DOI 10.1038/S41557-019-0218-9 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 6384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2337 - 4.7002 1.00 1249 139 0.2095 0.2869 REMARK 3 2 4.7002 - 3.7317 1.00 1153 129 0.2179 0.2773 REMARK 3 3 3.7317 - 3.2603 1.00 1125 125 0.2403 0.3469 REMARK 3 4 3.2603 - 2.9623 1.00 1117 124 0.2668 0.4062 REMARK 3 5 2.9623 - 2.7501 1.00 1100 123 0.2766 0.3656 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1686 REMARK 3 ANGLE : 1.205 2299 REMARK 3 CHIRALITY : 0.048 232 REMARK 3 PLANARITY : 0.006 305 REMARK 3 DIHEDRAL : 13.570 991 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235431. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.73 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6426 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 63.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 16.50 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BC5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROP CONSISTS OF 1 UL OF 30% PEG 400, REMARK 280 200 MM CALCIUM CHLORIDE AND 0.1 M HEPES (PH 7.5) MIXED WITH 1 UL REMARK 280 OF 2.5 MM PROTEIN, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.99800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 95.99600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.99700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 119.99500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.99900 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.99800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 95.99600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 119.99500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 71.99700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 23.99900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA C 202 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 304 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 18 CD OE1 OE2 REMARK 470 LYS A 19 CD CE NZ REMARK 470 ASP A 21 CG OD1 OD2 REMARK 470 LYS A 27 CE NZ REMARK 470 GLU A 49 OE1 OE2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 GLN C 25 CG CD OE1 NE2 REMARK 470 LYS C 27 CB CG CD CE NZ REMARK 470 LEU C 30 CG CD1 CD2 REMARK 470 LEU C 38 CG CD1 CD2 REMARK 470 LYS C 47 CB CG CD CE NZ REMARK 470 GLU C 49 CB CG CD OE1 OE2 REMARK 470 ASP C 50 CB CG OD1 OD2 REMARK 470 LYS C 51 CB CG CD CE NZ REMARK 470 ASP C 54 CB CG OD1 OD2 REMARK 470 SER C 55 CB OG REMARK 470 GLU C 57 CG CD OE1 OE2 REMARK 470 MET C 58 CG SD CE REMARK 470 TRP C 59 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 59 CZ3 CH2 REMARK 470 ASP C 60 CG OD1 OD2 REMARK 470 HIS C 63 CG ND1 CD2 CE1 NE2 REMARK 470 LEU C 76 CD1 CD2 REMARK 470 ASN C 80 CB CG OD1 ND2 REMARK 470 GLN C 103 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 2 125.57 70.61 REMARK 500 ASN A 11 -74.09 -52.29 REMARK 500 ASP A 12 -58.19 -27.50 REMARK 500 LEU A 48 42.28 -101.34 REMARK 500 GLU A 49 -100.48 -12.17 REMARK 500 ASP A 50 52.59 -109.73 REMARK 500 GLU A 81 32.07 -94.55 REMARK 500 VAL A 84 -76.39 -66.92 REMARK 500 LYS C 19 40.77 -82.86 REMARK 500 ASP C 54 47.14 -146.96 REMARK 500 SER C 55 -140.29 -124.08 REMARK 500 PRO C 56 -73.82 -64.24 REMARK 500 GLU C 81 -66.26 -95.46 REMARK 500 LYS C 83 83.27 -58.45 REMARK 500 ALA C 100 -74.43 -55.93 REMARK 500 LYS C 104 -71.83 -58.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 4 OE1 REMARK 620 2 GLU A 4 OE1 0.0 REMARK 620 3 GLU A 4 OE2 8.4 8.4 REMARK 620 4 GLU A 8 OE2 78.8 78.8 82.9 REMARK 620 5 ASP A 50 OD2 21.7 21.7 25.2 94.6 REMARK 620 6 HEC A 201 O1A 86.5 86.5 93.4 95.0 70.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 4 OE2 REMARK 620 2 ASP A 50 OD2 158.4 REMARK 620 3 HOH A 306 O 89.0 109.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 5 OD1 REMARK 620 2 ASP A 5 OD1 0.0 REMARK 620 3 ASP A 5 OD2 13.5 13.5 REMARK 620 4 GLU A 8 OE1 96.2 96.2 105.8 REMARK 620 5 HOH A 303 O 71.8 71.8 83.3 78.3 REMARK 620 6 HOH A 304 O 77.0 77.0 69.8 81.7 140.4 REMARK 620 7 HOH A 304 O 77.0 77.0 69.8 81.7 140.4 0.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 7 SD REMARK 620 2 HEC A 201 NA 92.2 REMARK 620 3 HEC A 201 NB 85.5 91.1 REMARK 620 4 HEC A 201 NC 90.7 175.4 85.6 REMARK 620 5 HEC A 201 ND 95.6 86.3 177.2 97.0 REMARK 620 6 HIS A 102 NE2 174.8 91.4 90.6 85.5 88.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 50 OD1 REMARK 620 2 HOH A 306 O 131.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 4 OE2 REMARK 620 2 GLU C 4 OE2 0.0 REMARK 620 3 HEC C 201 O1A 70.3 70.3 REMARK 620 4 HEC C 201 O1A 70.3 70.3 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 4 OE1 REMARK 620 2 GLU C 8 OE1 47.1 REMARK 620 3 GLU C 8 OE2 45.0 5.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET C 7 SD REMARK 620 2 HEC C 201 NA 91.3 REMARK 620 3 HEC C 201 NB 104.3 90.9 REMARK 620 4 HEC C 201 NC 89.9 174.6 93.9 REMARK 620 5 HEC C 201 ND 78.3 84.6 174.9 90.5 REMARK 620 6 HIS C 102 NE2 172.4 83.5 81.4 94.7 95.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC C 201 and CYS C REMARK 800 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC C 201 and CYS C REMARK 800 98 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6DY6 RELATED DB: PDB REMARK 900 RELATED ID: 6DY4 RELATED DB: PDB REMARK 900 RELATED ID: 6DY8 RELATED DB: PDB DBREF 6DYB A 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 6DYB C 1 106 UNP P0ABE7 C562_ECOLX 23 128 SEQADV 6DYB TRP A 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 6DYB HIS A 67 UNP P0ABE7 ILE 89 ENGINEERED MUTATION SEQADV 6DYB HIS A 71 UNP P0ABE7 GLN 93 ENGINEERED MUTATION SEQADV 6DYB CYS A 96 UNP P0ABE7 THR 118 ENGINEERED MUTATION SEQADV 6DYB HIS A 97 UNP P0ABE7 THR 119 ENGINEERED MUTATION SEQADV 6DYB CYS A 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 6DYB CYS A 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 6DYB TRP C 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 6DYB HIS C 67 UNP P0ABE7 ILE 89 ENGINEERED MUTATION SEQADV 6DYB HIS C 71 UNP P0ABE7 GLN 93 ENGINEERED MUTATION SEQADV 6DYB CYS C 96 UNP P0ABE7 THR 118 ENGINEERED MUTATION SEQADV 6DYB HIS C 97 UNP P0ABE7 THR 119 ENGINEERED MUTATION SEQADV 6DYB CYS C 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 6DYB CYS C 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQRES 1 A 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 A 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 A 106 LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP SEQRES 4 A 106 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 A 106 PRO ASP SER PRO GLU MET TRP ASP PHE ARG HIS GLY PHE SEQRES 6 A 106 ASP HIS LEU VAL GLY HIS ILE ASP ASP ALA LEU LYS LEU SEQRES 7 A 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 A 106 GLU GLN LEU LYS CYS HIS CYS ASN ALA CYS HIS GLN LYS SEQRES 9 A 106 TYR ARG SEQRES 1 C 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 C 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 C 106 LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP SEQRES 4 C 106 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 C 106 PRO ASP SER PRO GLU MET TRP ASP PHE ARG HIS GLY PHE SEQRES 6 C 106 ASP HIS LEU VAL GLY HIS ILE ASP ASP ALA LEU LYS LEU SEQRES 7 C 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 C 106 GLU GLN LEU LYS CYS HIS CYS ASN ALA CYS HIS GLN LYS SEQRES 9 C 106 TYR ARG HET HEC A 201 43 HET CA A 202 1 HET CA A 203 1 HET CA A 204 1 HET CA A 205 1 HET HEC C 201 43 HET CA C 202 1 HET CA C 203 1 HETNAM HEC HEME C HETNAM CA CALCIUM ION FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 4 CA 6(CA 2+) FORMUL 11 HOH *10(H2 O) HELIX 1 AA1 ASP A 2 LYS A 19 1 18 HELIX 2 AA2 ASN A 22 GLN A 41 1 20 HELIX 3 AA3 PRO A 45 GLU A 49 5 5 HELIX 4 AA4 SER A 55 GLU A 81 1 27 HELIX 5 AA5 LYS A 83 GLN A 93 1 11 HELIX 6 AA6 LEU A 94 ARG A 106 1 13 HELIX 7 AA7 ASP C 2 ILE C 17 1 16 HELIX 8 AA8 ALA C 24 ALA C 43 1 20 HELIX 9 AA9 PRO C 45 GLU C 49 5 5 HELIX 10 AB1 SER C 55 GLY C 82 1 28 HELIX 11 AB2 LYS C 83 GLU C 92 1 10 HELIX 12 AB3 LEU C 94 ARG C 106 1 13 SSBOND 1 CYS A 96 CYS C 96 1555 1555 2.04 LINK SG CYS A 98 CAB HEC A 201 1555 1555 1.77 LINK SG CYS A 101 CAC HEC A 201 1555 1555 1.77 LINK SG CYS C 98 CAB HEC C 201 1555 1555 1.76 LINK SG CYS C 101 CAC HEC C 201 1555 1555 1.77 LINK OE1 GLU A 4 CA CA A 202 1555 1555 2.25 LINK OE1 GLU A 4 CA CA A 202 1555 8555 2.54 LINK OE2 GLU A 4 CA CA A 202 1555 8555 2.47 LINK OE2 GLU A 4 CA CA A 204 1555 1555 2.56 LINK OD1 ASP A 5 CA CA A 203 1555 1555 2.06 LINK OD1 ASP A 5 CA CA A 203 1555 8555 2.57 LINK OD2 ASP A 5 CA CA A 203 1555 8555 2.34 LINK SD MET A 7 FE HEC A 201 1555 1555 2.46 LINK OE2 GLU A 8 CA CA A 202 1555 1555 2.44 LINK OE1 GLU A 8 CA CA A 203 1555 1555 2.26 LINK OD2 ASP A 50 CA CA A 202 1555 5554 2.27 LINK OD2 ASP A 50 CA CA A 204 1555 10554 2.99 LINK OD1 ASP A 50 CA CA A 205 1555 5554 2.74 LINK NE2 HIS A 102 FE HEC A 201 1555 1555 2.18 LINK O1A HEC A 201 CA CA A 202 1555 1555 2.53 LINK CA CA A 203 O HOH A 303 1555 1555 2.21 LINK CA CA A 203 O HOH A 304 1555 1555 2.54 LINK CA CA A 203 O HOH A 304 1555 8555 2.54 LINK CA CA A 204 O HOH A 306 1555 10554 2.66 LINK CA CA A 205 O HOH A 306 1555 6555 2.80 LINK OE2 GLU C 4 CA CA C 202 1555 1555 2.71 LINK OE2 GLU C 4 CA CA C 202 1555 10444 2.71 LINK OE1 GLU C 4 CA CA C 203 1555 1555 2.88 LINK SD MET C 7 FE HEC C 201 1555 1555 2.56 LINK OE1 GLU C 8 CA CA C 203 1555 10444 2.31 LINK OE2 GLU C 8 CA CA C 203 1555 10444 2.58 LINK NE2 HIS C 102 FE HEC C 201 1555 1555 2.38 LINK O1A HEC C 201 CA CA C 202 1555 1555 2.29 LINK O1A HEC C 201 CA CA C 202 1555 10444 2.29 SITE 1 AC1 14 GLU A 4 MET A 7 GLU A 8 ASN A 11 SITE 2 AC1 14 PRO A 45 ASP A 50 PHE A 61 PHE A 65 SITE 3 AC1 14 CYS A 98 CYS A 101 HIS A 102 TYR A 105 SITE 4 AC1 14 ARG A 106 CA A 202 SITE 1 AC2 4 GLU A 4 GLU A 8 ASP A 50 HEC A 201 SITE 1 AC3 5 ASP A 2 ASP A 5 GLU A 8 HOH A 303 SITE 2 AC3 5 HOH A 304 SITE 1 AC4 4 GLU A 4 ASP A 50 CA A 205 HOH A 306 SITE 1 AC5 3 ASP A 50 CA A 204 HOH A 306 SITE 1 AC6 2 GLU C 4 HEC C 201 SITE 1 AC7 3 GLU C 4 GLU C 8 HEC C 201 SITE 1 AC8 20 GLU C 4 MET C 7 GLU C 8 ASN C 11 SITE 2 AC8 20 PRO C 45 PRO C 46 PHE C 61 GLY C 64 SITE 3 AC8 20 PHE C 65 HIS C 97 CYS C 98 ASN C 99 SITE 4 AC8 20 ALA C 100 HIS C 102 GLN C 103 LYS C 104 SITE 5 AC8 20 TYR C 105 ARG C 106 CA C 202 CA C 203 SITE 1 AC9 19 GLU C 4 MET C 7 GLU C 8 ASN C 11 SITE 2 AC9 19 PRO C 45 PRO C 46 PHE C 61 GLY C 64 SITE 3 AC9 19 PHE C 65 LEU C 94 CYS C 96 HIS C 97 SITE 4 AC9 19 ASN C 99 ALA C 100 CYS C 101 HIS C 102 SITE 5 AC9 19 ARG C 106 CA C 202 CA C 203 CRYST1 73.008 73.008 143.994 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013697 0.007908 0.000000 0.00000 SCALE2 0.000000 0.015816 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006945 0.00000