HEADER IMMUNE SYSTEM 02-JUL-18 6DYX TITLE STRUCTURE OF VHH R419 ISOLATED FROM A PRE-IMMUNE PHAGE DISPLAY LIBRARY COMPND MOL_ID: 1; COMPND 2 MOLECULE: VHH R419; COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 3 ORGANISM_TAXID: 30538; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS NANOBODY VHH SINGLE DOMAIN ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.L.BROOKS REVDAT 3 11-OCT-23 6DYX 1 REMARK REVDAT 2 01-JAN-20 6DYX 1 REMARK REVDAT 1 03-APR-19 6DYX 0 JRNL AUTH B.WHITE,I.HUH,C.L.BROOKS JRNL TITL STRUCTURE OF A VHH ISOLATED FROM A NAIVE PHAGE DISPLAY JRNL TITL 2 LIBRARY. JRNL REF BMC RES NOTES V. 12 154 2019 JRNL REFN ESSN 1756-0500 JRNL PMID 30890176 JRNL DOI 10.1186/S13104-019-4197-0 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 25678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1554 - 3.1195 0.98 2961 143 0.1886 0.2029 REMARK 3 2 3.1195 - 2.4762 1.00 2775 164 0.1752 0.1810 REMARK 3 3 2.4762 - 2.1633 1.00 2741 140 0.1609 0.1806 REMARK 3 4 2.1633 - 1.9655 1.00 2724 143 0.1587 0.1834 REMARK 3 5 1.9655 - 1.8246 1.00 2685 143 0.1655 0.1826 REMARK 3 6 1.8246 - 1.7171 1.00 2682 147 0.1720 0.1807 REMARK 3 7 1.7171 - 1.6311 1.00 2676 147 0.1717 0.1917 REMARK 3 8 1.6311 - 1.5601 1.00 2669 140 0.1761 0.2008 REMARK 3 9 1.5601 - 1.5000 0.93 2455 143 0.1854 0.1977 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 896 REMARK 3 ANGLE : 0.875 1224 REMARK 3 CHIRALITY : 0.053 131 REMARK 3 PLANARITY : 0.006 157 REMARK 3 DIHEDRAL : 7.719 508 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7933 -10.5569 -16.5418 REMARK 3 T TENSOR REMARK 3 T11: 0.2063 T22: 0.3281 REMARK 3 T33: 0.2302 T12: 0.0400 REMARK 3 T13: 0.0215 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 4.1612 L22: 5.7931 REMARK 3 L33: 8.5393 L12: 4.7150 REMARK 3 L13: 4.6469 L23: 5.9916 REMARK 3 S TENSOR REMARK 3 S11: 0.3967 S12: -0.1416 S13: 0.3834 REMARK 3 S21: -0.0920 S22: -0.5998 S23: 0.4622 REMARK 3 S31: -0.2603 S32: -1.3095 S33: 0.2912 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 8 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5141 4.6219 -14.2692 REMARK 3 T TENSOR REMARK 3 T11: 0.4248 T22: 0.1422 REMARK 3 T33: 0.3514 T12: -0.0199 REMARK 3 T13: 0.0578 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 2.7675 L22: 1.5275 REMARK 3 L33: 4.6093 L12: 2.0561 REMARK 3 L13: 1.8116 L23: 1.3814 REMARK 3 S TENSOR REMARK 3 S11: 0.1975 S12: 0.0157 S13: 0.0694 REMARK 3 S21: 0.6145 S22: 0.1096 S23: 0.0000 REMARK 3 S31: -0.9185 S32: 0.0650 S33: -0.2673 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 18 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1193 -4.8216 -11.0194 REMARK 3 T TENSOR REMARK 3 T11: 0.2674 T22: 0.1509 REMARK 3 T33: 0.2230 T12: 0.0524 REMARK 3 T13: 0.0372 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 8.0138 L22: 7.4237 REMARK 3 L33: 7.1942 L12: 6.9921 REMARK 3 L13: 2.7134 L23: 3.6455 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: 0.0884 S13: 0.2148 REMARK 3 S21: 0.3111 S22: 0.2320 S23: 0.1980 REMARK 3 S31: -0.5581 S32: -0.1892 S33: -0.1817 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 25 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5312 -16.5685 -7.7530 REMARK 3 T TENSOR REMARK 3 T11: 0.1921 T22: 0.2550 REMARK 3 T33: 0.2164 T12: 0.0418 REMARK 3 T13: 0.0430 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 3.8734 L22: 4.4665 REMARK 3 L33: 7.2376 L12: 1.0976 REMARK 3 L13: -2.2657 L23: -0.3595 REMARK 3 S TENSOR REMARK 3 S11: 0.1589 S12: 0.5368 S13: 0.0907 REMARK 3 S21: 0.1287 S22: -0.0924 S23: 0.6554 REMARK 3 S31: -0.5570 S32: -0.9291 S33: -0.0597 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 34 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5836 -13.9273 -14.3411 REMARK 3 T TENSOR REMARK 3 T11: 0.1531 T22: 0.1217 REMARK 3 T33: 0.1404 T12: -0.0130 REMARK 3 T13: -0.0052 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 3.7431 L22: 4.3105 REMARK 3 L33: 3.5188 L12: 2.1144 REMARK 3 L13: -2.9843 L23: -3.5404 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: -0.0427 S13: 0.0743 REMARK 3 S21: -0.1814 S22: -0.0875 S23: 0.0385 REMARK 3 S31: 0.1541 S32: 0.1214 S33: 0.1052 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 58 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3797 -10.4875 -7.3619 REMARK 3 T TENSOR REMARK 3 T11: 0.1775 T22: 0.1367 REMARK 3 T33: 0.1121 T12: -0.0231 REMARK 3 T13: -0.0151 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 7.3638 L22: 3.7261 REMARK 3 L33: 5.6582 L12: 2.7349 REMARK 3 L13: -3.6779 L23: -1.9679 REMARK 3 S TENSOR REMARK 3 S11: -0.0476 S12: -0.2188 S13: -0.0552 REMARK 3 S21: 0.1420 S22: -0.0675 S23: -0.2639 REMARK 3 S31: -0.2036 S32: 0.3501 S33: 0.0758 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 74 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3748 -7.6353 -6.4868 REMARK 3 T TENSOR REMARK 3 T11: 0.2491 T22: 0.1640 REMARK 3 T33: 0.1930 T12: 0.0343 REMARK 3 T13: 0.0351 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 3.6698 L22: 5.9317 REMARK 3 L33: 3.7118 L12: 4.6475 REMARK 3 L13: -2.1345 L23: -2.4049 REMARK 3 S TENSOR REMARK 3 S11: 0.1509 S12: -0.1041 S13: 0.5178 REMARK 3 S21: 0.3210 S22: 0.0584 S23: 0.3673 REMARK 3 S31: -0.3715 S32: -0.1221 S33: -0.2328 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 84 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9271 -12.3100 -17.8729 REMARK 3 T TENSOR REMARK 3 T11: 0.1470 T22: 0.1609 REMARK 3 T33: 0.1273 T12: -0.0009 REMARK 3 T13: 0.0025 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.9393 L22: 3.4557 REMARK 3 L33: 1.7634 L12: 0.4508 REMARK 3 L13: -0.5778 L23: -1.2734 REMARK 3 S TENSOR REMARK 3 S11: 0.0543 S12: 0.1248 S13: 0.1537 REMARK 3 S21: 0.0961 S22: 0.0309 S23: 0.1485 REMARK 3 S31: -0.1637 S32: 0.0438 S33: -0.0674 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 112 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5757 1.0230 -20.0631 REMARK 3 T TENSOR REMARK 3 T11: 0.3322 T22: 0.1638 REMARK 3 T33: 0.2236 T12: -0.0236 REMARK 3 T13: 0.0514 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.5317 L22: 8.0717 REMARK 3 L33: 8.0660 L12: 3.8396 REMARK 3 L13: 2.5975 L23: 0.5014 REMARK 3 S TENSOR REMARK 3 S11: 0.1490 S12: 0.0841 S13: 0.5533 REMARK 3 S21: 0.4082 S22: 0.0293 S23: 0.1030 REMARK 3 S31: -0.8893 S32: 0.2082 S33: -0.0777 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DYX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25716 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 36.145 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.20700 REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.33500 REMARK 200 R SYM FOR SHELL (I) : 0.33500 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6DBA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE 0.1 M MES 30% REMARK 280 PEG MME, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.57200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.78600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.67900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.89300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 129.46500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 103.57200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 51.78600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 25.89300 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 77.67900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 129.46500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 378 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 432 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER D 118 REMARK 465 HIS D 119 REMARK 465 HIS D 120 REMARK 465 HIS D 121 REMARK 465 HIS D 122 REMARK 465 HIS D 123 REMARK 465 HIS D 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN D 1 CG CD OE1 NE2 REMARK 470 LYS D 3 CG CD CE NZ REMARK 470 GLN D 13 CG CD OE1 NE2 REMARK 470 ARG D 27 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 43 CE NZ REMARK 470 GLU D 44 CG CD OE1 OE2 REMARK 470 GLU D 46 CG CD OE1 OE2 REMARK 470 LYS D 87 CE NZ REMARK 470 GLU D 89 CG CD OE1 OE2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 203 DBREF 6DYX D 1 124 PDB 6DYX 6DYX 1 124 SEQRES 1 D 124 GLN VAL LYS LEU GLU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 124 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 D 124 ARG THR TYR SER THR TYR ALA MET GLY TRP PHE ARG GLN SEQRES 4 D 124 THR PRO GLY LYS GLU ARG GLU LEU VAL ALA ALA ILE ASN SEQRES 5 D 124 TRP SER GLY GLY ASN THR HIS TYR ALA ASP SER VAL LYS SEQRES 6 D 124 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS SER THR SEQRES 7 D 124 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 D 124 ALA VAL TYR TYR CYS ALA ALA PRO LYS GLY HIS THR GLY SEQRES 9 D 124 ASP HIS TYR TRP GLY PRO GLY THR GLN VAL THR VAL SER SEQRES 10 D 124 SER HIS HIS HIS HIS HIS HIS HET SO4 D 201 5 HET ACT D 202 7 HET SO4 D 203 5 HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 3 ACT C2 H3 O2 1- FORMUL 5 HOH *141(H2 O) HELIX 1 AA1 ASP D 62 LYS D 65 5 4 HELIX 2 AA2 LYS D 87 THR D 91 5 5 SHEET 1 AA1 4 LEU D 4 SER D 7 0 SHEET 2 AA1 4 LEU D 18 ALA D 24 -1 O ALA D 23 N GLU D 5 SHEET 3 AA1 4 THR D 78 MET D 83 -1 O MET D 83 N LEU D 18 SHEET 4 AA1 4 PHE D 68 ASP D 73 -1 N ASP D 73 O THR D 78 SHEET 1 AA2 6 GLY D 10 GLN D 13 0 SHEET 2 AA2 6 THR D 112 SER D 117 1 O THR D 115 N GLY D 10 SHEET 3 AA2 6 ALA D 92 PRO D 99 -1 N TYR D 94 O THR D 112 SHEET 4 AA2 6 MET D 34 GLN D 39 -1 N PHE D 37 O TYR D 95 SHEET 5 AA2 6 GLU D 46 ILE D 51 -1 O VAL D 48 N TRP D 36 SHEET 6 AA2 6 THR D 58 TYR D 60 -1 O HIS D 59 N ALA D 50 SHEET 1 AA3 4 GLY D 10 GLN D 13 0 SHEET 2 AA3 4 THR D 112 SER D 117 1 O THR D 115 N GLY D 10 SHEET 3 AA3 4 ALA D 92 PRO D 99 -1 N TYR D 94 O THR D 112 SHEET 4 AA3 4 HIS D 106 TRP D 108 -1 O TYR D 107 N ALA D 98 SSBOND 1 CYS D 22 CYS D 96 1555 1555 2.03 SITE 1 AC1 6 TYR D 32 PRO D 99 GLY D 101 HIS D 102 SITE 2 AC1 6 TYR D 107 HOH D 337 SITE 1 AC2 2 MET D 34 ALA D 97 SITE 1 AC3 4 SER D 30 THR D 31 TYR D 32 HOH D 302 CRYST1 58.281 58.281 155.358 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017158 0.009906 0.000000 0.00000 SCALE2 0.000000 0.019813 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006437 0.00000