HEADER OXIDOREDUCTASE 06-JUL-18 6E08 TITLE CRYSTAL STRUCTURE OF G6PD IN COMPLEX WITH STRUCTURAL NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE; COMPND 3 CHAIN: L; COMPND 4 SYNONYM: G6PD; COMPND 5 EC: 1.1.1.49; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: G6PD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS G6PD, NADP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.RAHIGHI,D.MOCHLY ROSEN,S.WAKATSUKI REVDAT 3 11-OCT-23 6E08 1 REMARK REVDAT 2 17-OCT-18 6E08 1 JRNL REVDAT 1 25-JUL-18 6E08 0 SPRSDE 25-JUL-18 6E08 5VFL JRNL AUTH S.HWANG,K.MRUK,S.RAHIGHI,A.G.RAUB,C.H.CHEN,L.E.DORN, JRNL AUTH 2 N.HORIKOSHI,S.WAKATSUKI,J.K.CHEN,D.MOCHLY-ROSEN JRNL TITL CORRECTING GLUCOSE-6-PHOSPHATE DEHYDROGENASE DEFICIENCY WITH JRNL TITL 2 A SMALL-MOLECULE ACTIVATOR. JRNL REF NAT COMMUN V. 9 4045 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30279493 JRNL DOI 10.1038/S41467-018-06447-Z REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 40413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2171 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2782 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3946 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 406 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.127 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4119 ; 0.015 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 3639 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5571 ; 1.786 ; 1.682 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8543 ; 1.070 ; 1.650 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 485 ; 6.852 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 238 ;33.712 ;21.849 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 702 ;14.464 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.962 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 518 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4586 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 787 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1943 ; 1.427 ; 1.814 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1942 ; 1.426 ; 1.812 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2427 ; 2.147 ; 2.710 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2428 ; 2.146 ; 2.712 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2176 ; 2.453 ; 2.201 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2176 ; 2.453 ; 2.201 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3145 ; 3.906 ; 3.164 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4740 ; 5.464 ;22.473 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4648 ; 5.382 ;22.092 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 28 L 513 REMARK 3 RESIDUE RANGE : L 601 L 606 REMARK 3 RESIDUE RANGE : L 701 L 1106 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2895 21.7716 29.5292 REMARK 3 T TENSOR REMARK 3 T11: 0.0232 T22: 0.0108 REMARK 3 T33: 0.0083 T12: 0.0060 REMARK 3 T13: 0.0025 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.3748 L22: 0.2768 REMARK 3 L33: 0.4916 L12: 0.0909 REMARK 3 L13: 0.0861 L23: 0.1612 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.0132 S13: -0.0235 REMARK 3 S21: -0.0084 S22: 0.0447 S23: -0.0377 REMARK 3 S31: 0.0458 S32: 0.0458 S33: -0.0442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6E08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40413 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.79000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2BHL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3350, 0.2 M POTASSIUM REMARK 280 FORMATE, PH 7.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 86.70500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 107.95450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 86.70500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 107.95450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 86.70500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 107.95450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 86.70500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 107.95450 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 30.29000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 107.95450 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 30.29000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 107.95450 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 30.29000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 107.95450 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 30.29000 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 107.95450 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 30.29000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 86.70500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 30.29000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 86.70500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 30.29000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 86.70500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 30.29000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 86.70500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 836 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET L 1 REMARK 465 ALA L 2 REMARK 465 GLU L 3 REMARK 465 GLN L 4 REMARK 465 VAL L 5 REMARK 465 ALA L 6 REMARK 465 LEU L 7 REMARK 465 SER L 8 REMARK 465 ARG L 9 REMARK 465 THR L 10 REMARK 465 GLN L 11 REMARK 465 VAL L 12 REMARK 465 CYS L 13 REMARK 465 GLY L 14 REMARK 465 ILE L 15 REMARK 465 LEU L 16 REMARK 465 ARG L 17 REMARK 465 GLU L 18 REMARK 465 GLU L 19 REMARK 465 LEU L 20 REMARK 465 PHE L 21 REMARK 465 GLN L 22 REMARK 465 GLY L 23 REMARK 465 ASP L 24 REMARK 465 ALA L 25 REMARK 465 PHE L 26 REMARK 465 HIS L 27 REMARK 465 LYS L 514 REMARK 465 LEU L 515 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 831 O HOH L 1023 1.90 REMARK 500 NH1 ARG L 175 O HOH L 701 1.96 REMARK 500 O HOH L 983 O HOH L 1005 2.14 REMARK 500 O HOH L 900 O HOH L 1017 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 922 O HOH L 922 14555 1.84 REMARK 500 O HOH L 1104 O HOH L 1104 3655 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 175 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG L 198 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG L 219 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS L 47 -51.56 -124.72 REMARK 500 ASN L 64 70.12 -101.76 REMARK 500 ALA L 141 59.68 -90.25 REMARK 500 ASP L 176 -172.76 -171.03 REMARK 500 ASN L 262 -82.54 -114.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG L 72 0.10 SIDE CHAIN REMARK 500 ARG L 104 0.08 SIDE CHAIN REMARK 500 ARG L 182 0.12 SIDE CHAIN REMARK 500 ARG L 365 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L1103 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH L1104 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH L1105 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH L1106 DISTANCE = 7.11 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP L 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 606 DBREF 6E08 L 1 515 UNP P11413 G6PD_HUMAN 1 515 SEQRES 1 L 515 MET ALA GLU GLN VAL ALA LEU SER ARG THR GLN VAL CYS SEQRES 2 L 515 GLY ILE LEU ARG GLU GLU LEU PHE GLN GLY ASP ALA PHE SEQRES 3 L 515 HIS GLN SER ASP THR HIS ILE PHE ILE ILE MET GLY ALA SEQRES 4 L 515 SER GLY ASP LEU ALA LYS LYS LYS ILE TYR PRO THR ILE SEQRES 5 L 515 TRP TRP LEU PHE ARG ASP GLY LEU LEU PRO GLU ASN THR SEQRES 6 L 515 PHE ILE VAL GLY TYR ALA ARG SER ARG LEU THR VAL ALA SEQRES 7 L 515 ASP ILE ARG LYS GLN SER GLU PRO PHE PHE LYS ALA THR SEQRES 8 L 515 PRO GLU GLU LYS LEU LYS LEU GLU ASP PHE PHE ALA ARG SEQRES 9 L 515 ASN SER TYR VAL ALA GLY GLN TYR ASP ASP ALA ALA SER SEQRES 10 L 515 TYR GLN ARG LEU ASN SER HIS MET ASN ALA LEU HIS LEU SEQRES 11 L 515 GLY SER GLN ALA ASN ARG LEU PHE TYR LEU ALA LEU PRO SEQRES 12 L 515 PRO THR VAL TYR GLU ALA VAL THR LYS ASN ILE HIS GLU SEQRES 13 L 515 SER CYS MET SER GLN ILE GLY TRP ASN ARG ILE ILE VAL SEQRES 14 L 515 GLU LYS PRO PHE GLY ARG ASP LEU GLN SER SER ASP ARG SEQRES 15 L 515 LEU SER ASN HIS ILE SER SER LEU PHE ARG GLU ASP GLN SEQRES 16 L 515 ILE TYR ARG ILE ASP HIS TYR LEU GLY LYS GLU MET VAL SEQRES 17 L 515 GLN ASN LEU MET VAL LEU ARG PHE ALA ASN ARG ILE PHE SEQRES 18 L 515 GLY PRO ILE TRP ASN ARG ASP ASN ILE ALA CYS VAL ILE SEQRES 19 L 515 LEU THR PHE LYS GLU PRO PHE GLY THR GLU GLY ARG GLY SEQRES 20 L 515 GLY TYR PHE ASP GLU PHE GLY ILE ILE ARG ASP VAL MET SEQRES 21 L 515 GLN ASN HIS LEU LEU GLN MET LEU CYS LEU VAL ALA MET SEQRES 22 L 515 GLU LYS PRO ALA SER THR ASN SER ASP ASP VAL ARG ASP SEQRES 23 L 515 GLU LYS VAL LYS VAL LEU LYS CYS ILE SER GLU VAL GLN SEQRES 24 L 515 ALA ASN ASN VAL VAL LEU GLY GLN TYR VAL GLY ASN PRO SEQRES 25 L 515 ASP GLY GLU GLY GLU ALA THR LYS GLY TYR LEU ASP ASP SEQRES 26 L 515 PRO THR VAL PRO ARG GLY SER THR THR ALA THR PHE ALA SEQRES 27 L 515 ALA VAL VAL LEU TYR VAL GLU ASN GLU ARG TRP ASP GLY SEQRES 28 L 515 VAL PRO PHE ILE LEU ARG CYS GLY LYS ALA LEU ASN GLU SEQRES 29 L 515 ARG LYS ALA GLU VAL ARG LEU GLN PHE HIS ASP VAL ALA SEQRES 30 L 515 GLY ASP ILE PHE HIS GLN GLN CYS LYS ARG ASN GLU LEU SEQRES 31 L 515 VAL ILE ARG VAL GLN PRO ASN GLU ALA VAL TYR THR LYS SEQRES 32 L 515 MET MET THR LYS LYS PRO GLY MET PHE PHE ASN PRO GLU SEQRES 33 L 515 GLU SER GLU LEU ASP LEU THR TYR GLY ASN ARG TYR LYS SEQRES 34 L 515 ASN VAL LYS LEU PRO ASP ALA TYR GLU ARG LEU ILE LEU SEQRES 35 L 515 ASP VAL PHE CYS GLY SER GLN MET HIS PHE VAL ARG SER SEQRES 36 L 515 ASP GLU LEU ARG GLU ALA TRP ARG ILE PHE THR PRO LEU SEQRES 37 L 515 LEU HIS GLN ILE GLU LEU GLU LYS PRO LYS PRO ILE PRO SEQRES 38 L 515 TYR ILE TYR GLY SER ARG GLY PRO THR GLU ALA ASP GLU SEQRES 39 L 515 LEU MET LYS ARG VAL GLY PHE GLN TYR GLU GLY THR TYR SEQRES 40 L 515 LYS TRP VAL ASN PRO HIS LYS LEU HET NAP L 601 48 HET GOL L 602 6 HET GOL L 603 6 HET GOL L 604 6 HET GOL L 605 6 HET GOL L 606 6 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM GOL GLYCEROL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 GOL 5(C3 H8 O3) FORMUL 8 HOH *406(H2 O) HELIX 1 AA1 GLY L 41 LYS L 47 1 7 HELIX 2 AA2 LYS L 47 ASP L 58 1 12 HELIX 3 AA3 THR L 76 GLU L 85 1 10 HELIX 4 AA4 PRO L 86 PHE L 88 5 3 HELIX 5 AA5 THR L 91 GLU L 93 5 3 HELIX 6 AA6 GLU L 94 ARG L 104 1 11 HELIX 7 AA7 ASP L 114 ALA L 127 1 14 HELIX 8 AA8 PRO L 143 THR L 145 5 3 HELIX 9 AA9 VAL L 146 CYS L 158 1 13 HELIX 10 AB1 ASP L 176 PHE L 191 1 16 HELIX 11 AB2 ARG L 192 ASP L 194 5 3 HELIX 12 AB3 ASP L 200 GLY L 204 5 5 HELIX 13 AB4 LYS L 205 ALA L 217 1 13 HELIX 14 AB5 ASN L 218 GLY L 222 5 5 HELIX 15 AB6 ARG L 246 ASP L 251 1 6 HELIX 16 AB7 PHE L 253 VAL L 259 1 7 HELIX 17 AB8 ASN L 262 MET L 273 1 12 HELIX 18 AB9 ASN L 280 LYS L 293 1 14 HELIX 19 AC1 GLN L 299 ASN L 301 5 3 HELIX 20 AC2 GLU L 315 LYS L 320 5 6 HELIX 21 AC3 GLY L 321 ASP L 325 5 5 HELIX 22 AC4 TYR L 424 TYR L 428 1 5 HELIX 23 AC5 ASP L 435 GLY L 447 1 13 HELIX 24 AC6 ARG L 454 LYS L 476 1 23 HELIX 25 AC7 PRO L 489 GLY L 500 1 12 SHEET 1 AA1 6 ASN L 105 ALA L 109 0 SHEET 2 AA1 6 THR L 65 ALA L 71 1 N GLY L 69 O VAL L 108 SHEET 3 AA1 6 HIS L 32 MET L 37 1 N PHE L 34 O PHE L 66 SHEET 4 AA1 6 ASN L 135 LEU L 140 1 O TYR L 139 N ILE L 35 SHEET 5 AA1 6 ASN L 165 VAL L 169 1 O ILE L 168 N PHE L 138 SHEET 6 AA1 6 ILE L 196 ARG L 198 1 O TYR L 197 N ILE L 167 SHEET 1 AA2 9 PRO L 415 THR L 423 0 SHEET 2 AA2 9 ALA L 399 LYS L 407 -1 N THR L 406 O GLU L 416 SHEET 3 AA2 9 GLU L 389 GLN L 395 -1 N VAL L 391 O TYR L 401 SHEET 4 AA2 9 LYS L 366 PHE L 373 -1 N LEU L 371 O LEU L 390 SHEET 5 AA2 9 ILE L 230 LYS L 238 -1 N LYS L 238 O LYS L 366 SHEET 6 AA2 9 PHE L 354 GLY L 359 1 O ILE L 355 N LEU L 235 SHEET 7 AA2 9 PHE L 337 LEU L 342 -1 N VAL L 340 O LEU L 356 SHEET 8 AA2 9 VAL L 303 VAL L 309 -1 N GLY L 306 O PHE L 337 SHEET 9 AA2 9 ILE L 480 ILE L 483 1 O TYR L 482 N VAL L 309 CISPEP 1 LYS L 171 PRO L 172 0 6.77 CISPEP 2 GLN L 395 PRO L 396 0 -9.62 SITE 1 AC1 25 LYS L 238 LYS L 366 ARG L 370 ARG L 393 SITE 2 AC1 25 TYR L 401 LYS L 403 ASP L 421 THR L 423 SITE 3 AC1 25 ARG L 487 ASP L 493 MET L 496 PHE L 501 SITE 4 AC1 25 TYR L 503 TYR L 507 TRP L 509 HOH L 710 SITE 5 AC1 25 HOH L 716 HOH L 725 HOH L 736 HOH L 756 SITE 6 AC1 25 HOH L 759 HOH L 766 HOH L 793 HOH L 831 SITE 7 AC1 25 HOH L 835 SITE 1 AC2 6 ARG L 219 ARG L 227 ASP L 350 ASP L 375 SITE 2 AC2 6 HOH L 825 HOH L 980 SITE 1 AC3 7 LYS L 293 CYS L 294 ILE L 295 GLU L 345 SITE 2 AC3 7 ARG L 463 HOH L 749 HOH L 938 SITE 1 AC4 7 LYS L 171 HIS L 201 PHE L 237 GLU L 239 SITE 2 AC4 7 ASP L 258 VAL L 259 HIS L 263 SITE 1 AC5 2 TYR L 343 HOH L 727 SITE 1 AC6 2 LYS L 497 ARG L 498 CRYST1 60.580 173.410 215.909 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016507 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004632 0.00000