HEADER OXIDOREDUCTASE 06-JUL-18 6E0B TITLE PLASMODIUM FALCIPARUM DIHYDROOROTATE DEHYDROGENASE C276F MUTANT BOUND TITLE 2 WITH TRIAZOLOPYRIMIDINE-BASED INHIBITOR DSM1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 158-569 WITH 384-413 DELETED; COMPND 5 SYNONYM: DHODEHASE,DIHYDROOROTATE OXIDASE; COMPND 6 EC: 1.3.5.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: ISOLATE 3D7; SOURCE 4 ORGANISM_TAXID: 36329; SOURCE 5 GENE: PFF0160C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS PLASMODIUM FALCIPARUM, DIHYDROOROTATE DEHYDROGENASE, KEYWDS 2 TRIAZOLOPYRIMIDINE, INHIBITOR, DSM1, FAD, FLAVOPROTEIN, MEMBRANE, KEYWDS 3 MITOCHONDRION, MITOCHONDRION INNER MEMBRANE, OXIDOREDUCTASE, KEYWDS 4 PYRIMIDINE BIOSYNTHESIS, TRANSIT PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR D.R.TOMCHICK,M.A.PHILLIPS,X.DENG REVDAT 4 11-OCT-23 6E0B 1 REMARK REVDAT 3 18-DEC-19 6E0B 1 REMARK REVDAT 2 01-MAY-19 6E0B 1 JRNL REVDAT 1 14-NOV-18 6E0B 0 JRNL AUTH J.WHITE,S.K.DHINGRA,X.DENG,F.EL MAZOUNI,M.C.S.LEE, JRNL AUTH 2 G.A.AFANADOR,A.LAWONG,D.R.TOMCHICK,C.L.NG,J.BATH,P.K.RATHOD, JRNL AUTH 3 D.A.FIDOCK,M.A.PHILLIPS JRNL TITL IDENTIFICATION AND MECHANISTIC UNDERSTANDING OF JRNL TITL 2 DIHYDROOROTATE DEHYDROGENASE POINT MUTATIONS IN PLASMODIUM JRNL TITL 3 FALCIPARUM THAT CONFER IN VITRO RESISTANCE TO THE CLINICAL JRNL TITL 4 CANDIDATE DSM265. JRNL REF ACS INFECT DIS V. 5 90 2019 JRNL REFN ESSN 2373-8227 JRNL PMID 30375858 JRNL DOI 10.1021/ACSINFECDIS.8B00211 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 28982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7699 - 4.5213 1.00 3218 171 0.1587 0.1693 REMARK 3 2 4.5213 - 3.5893 1.00 3206 165 0.1533 0.1817 REMARK 3 3 3.5893 - 3.1357 1.00 3194 173 0.1735 0.1882 REMARK 3 4 3.1357 - 2.8491 1.00 3173 164 0.1831 0.2203 REMARK 3 5 2.8491 - 2.6449 1.00 3194 171 0.1829 0.2224 REMARK 3 6 2.6449 - 2.4890 1.00 3185 171 0.1906 0.2270 REMARK 3 7 2.4890 - 2.3644 1.00 3168 165 0.2091 0.2278 REMARK 3 8 2.3644 - 2.2615 0.95 3013 167 0.2184 0.2668 REMARK 3 9 2.2615 - 2.1744 0.52 1634 88 0.2358 0.3020 REMARK 3 10 2.1744 - 2.0994 0.17 535 27 0.2552 0.3074 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 93.2932 -31.8380 19.8115 REMARK 3 T TENSOR REMARK 3 T11: 0.5288 T22: 0.2423 REMARK 3 T33: 0.1893 T12: 0.0833 REMARK 3 T13: 0.0633 T23: 0.0448 REMARK 3 L TENSOR REMARK 3 L11: 3.9320 L22: 1.4204 REMARK 3 L33: 1.9471 L12: -1.6841 REMARK 3 L13: -0.8682 L23: 0.4078 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: -0.2749 S13: -0.4387 REMARK 3 S21: 0.1709 S22: -0.0071 S23: 0.2388 REMARK 3 S31: 0.3694 S32: 0.0717 S33: 0.0126 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 92.4893 -24.8333 4.8569 REMARK 3 T TENSOR REMARK 3 T11: 0.3256 T22: 0.1829 REMARK 3 T33: 0.1436 T12: 0.1466 REMARK 3 T13: 0.0373 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.9516 L22: 1.3039 REMARK 3 L33: 0.5907 L12: -0.4002 REMARK 3 L13: -0.3136 L23: 0.4985 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: 0.0151 S13: -0.0510 REMARK 3 S21: 0.0583 S22: -0.0520 S23: 0.1388 REMARK 3 S31: 0.0165 S32: -0.0496 S33: 0.0655 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 300 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.4228 -13.5996 -4.3955 REMARK 3 T TENSOR REMARK 3 T11: 0.3897 T22: 0.3141 REMARK 3 T33: 0.2665 T12: 0.2174 REMARK 3 T13: 0.0165 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.1721 L22: 1.8432 REMARK 3 L33: 0.4196 L12: -0.6333 REMARK 3 L13: 0.1505 L23: -0.1803 REMARK 3 S TENSOR REMARK 3 S11: 0.0570 S12: 0.0980 S13: 0.1994 REMARK 3 S21: -0.1257 S22: -0.0644 S23: 0.2866 REMARK 3 S31: -0.1174 S32: -0.1553 S33: -0.0049 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 424 ) REMARK 3 ORIGIN FOR THE GROUP (A): 101.6531 -16.2198 -14.1792 REMARK 3 T TENSOR REMARK 3 T11: 0.4889 T22: 0.4022 REMARK 3 T33: 0.2149 T12: 0.2178 REMARK 3 T13: 0.0690 T23: 0.0792 REMARK 3 L TENSOR REMARK 3 L11: 7.3051 L22: 3.5801 REMARK 3 L33: 4.7131 L12: 4.6671 REMARK 3 L13: -1.0505 L23: -0.6459 REMARK 3 S TENSOR REMARK 3 S11: -0.0729 S12: 0.5090 S13: 0.4274 REMARK 3 S21: -0.5867 S22: -0.0636 S23: 0.0433 REMARK 3 S31: -0.4042 S32: 0.1616 S33: 0.1300 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 425 THROUGH 534 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.4909 -27.9507 -0.7795 REMARK 3 T TENSOR REMARK 3 T11: 0.2723 T22: 0.4104 REMARK 3 T33: 0.4287 T12: 0.1065 REMARK 3 T13: 0.0014 T23: -0.1153 REMARK 3 L TENSOR REMARK 3 L11: 1.8594 L22: 1.5966 REMARK 3 L33: 1.5959 L12: 0.0457 REMARK 3 L13: 0.3313 L23: -0.3743 REMARK 3 S TENSOR REMARK 3 S11: 0.0569 S12: 0.1917 S13: -0.0817 REMARK 3 S21: -0.0178 S22: -0.0525 S23: 0.6726 REMARK 3 S31: -0.1151 S32: -0.6610 S33: -0.0134 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 535 THROUGH 566 ) REMARK 3 ORIGIN FOR THE GROUP (A): 85.1003 -44.1538 -3.3738 REMARK 3 T TENSOR REMARK 3 T11: 0.4155 T22: 0.2766 REMARK 3 T33: 0.4864 T12: 0.0077 REMARK 3 T13: -0.0169 T23: -0.1463 REMARK 3 L TENSOR REMARK 3 L11: 1.3645 L22: 4.9513 REMARK 3 L33: 7.6789 L12: 1.6881 REMARK 3 L13: 1.7176 L23: 3.0524 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: 0.2539 S13: -0.4883 REMARK 3 S21: -0.2726 S22: -0.0321 S23: 0.4307 REMARK 3 S31: 0.5952 S32: -0.3952 S33: -0.0409 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E0B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33650 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.099 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 1.87700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3I65 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.06 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE, 14% PEG 4000 (W/V), 24% GLYCEROL, 10 MM DTT, PH 4.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.29300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.58600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.29300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.58600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 139 REMARK 465 GLY A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 ALA A 147 REMARK 465 GLU A 148 REMARK 465 ASN A 149 REMARK 465 LEU A 150 REMARK 465 TYR A 151 REMARK 465 PHE A 152 REMARK 465 GLN A 153 REMARK 465 GLY A 154 REMARK 465 ALA A 155 REMARK 465 ASP A 156 REMARK 465 PRO A 157 REMARK 465 PHE A 158 REMARK 465 GLU A 159 REMARK 465 SER A 160 REMARK 465 TYR A 161 REMARK 465 SER A 567 REMARK 465 LYS A 568 REMARK 465 SER A 569 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 255 H LYS A 316 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 213 -132.25 52.53 REMARK 500 ASP A 228 76.00 -110.35 REMARK 500 CYS A 233 27.24 -143.78 REMARK 500 ASN A 418 -158.33 -136.04 REMARK 500 TYR A 528 -69.80 -145.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LDA A 1007 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JZ8 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ORO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 1007 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I65 RELATED DB: PDB REMARK 900 RELATED ID: 3I6R RELATED DB: PDB REMARK 900 RELATED ID: 3I68 RELATED DB: PDB DBREF 6E0B A 158 569 UNP Q08210 PYRD_PLAF7 158 569 SEQADV 6E0B MET A 139 UNP Q08210 INITIATING METHIONINE SEQADV 6E0B GLY A 140 UNP Q08210 EXPRESSION TAG SEQADV 6E0B HIS A 141 UNP Q08210 EXPRESSION TAG SEQADV 6E0B HIS A 142 UNP Q08210 EXPRESSION TAG SEQADV 6E0B HIS A 143 UNP Q08210 EXPRESSION TAG SEQADV 6E0B HIS A 144 UNP Q08210 EXPRESSION TAG SEQADV 6E0B HIS A 145 UNP Q08210 EXPRESSION TAG SEQADV 6E0B HIS A 146 UNP Q08210 EXPRESSION TAG SEQADV 6E0B ALA A 147 UNP Q08210 EXPRESSION TAG SEQADV 6E0B GLU A 148 UNP Q08210 EXPRESSION TAG SEQADV 6E0B ASN A 149 UNP Q08210 EXPRESSION TAG SEQADV 6E0B LEU A 150 UNP Q08210 EXPRESSION TAG SEQADV 6E0B TYR A 151 UNP Q08210 EXPRESSION TAG SEQADV 6E0B PHE A 152 UNP Q08210 EXPRESSION TAG SEQADV 6E0B GLN A 153 UNP Q08210 EXPRESSION TAG SEQADV 6E0B GLY A 154 UNP Q08210 EXPRESSION TAG SEQADV 6E0B ALA A 155 UNP Q08210 EXPRESSION TAG SEQADV 6E0B ASP A 156 UNP Q08210 EXPRESSION TAG SEQADV 6E0B PRO A 157 UNP Q08210 EXPRESSION TAG SEQADV 6E0B PHE A 276 UNP Q08210 CYS 276 ENGINEERED MUTATION SEQADV 6E0B A UNP Q08210 SER 384 DELETION SEQADV 6E0B A UNP Q08210 THR 385 DELETION SEQADV 6E0B A UNP Q08210 TYR 386 DELETION SEQADV 6E0B A UNP Q08210 ASN 387 DELETION SEQADV 6E0B A UNP Q08210 GLU 388 DELETION SEQADV 6E0B A UNP Q08210 ASP 389 DELETION SEQADV 6E0B A UNP Q08210 ASN 390 DELETION SEQADV 6E0B A UNP Q08210 LYS 391 DELETION SEQADV 6E0B A UNP Q08210 ILE 392 DELETION SEQADV 6E0B A UNP Q08210 VAL 393 DELETION SEQADV 6E0B A UNP Q08210 GLU 394 DELETION SEQADV 6E0B A UNP Q08210 LYS 395 DELETION SEQADV 6E0B A UNP Q08210 LYS 396 DELETION SEQADV 6E0B A UNP Q08210 ASN 397 DELETION SEQADV 6E0B A UNP Q08210 ASN 398 DELETION SEQADV 6E0B A UNP Q08210 PHE 399 DELETION SEQADV 6E0B A UNP Q08210 ASN 400 DELETION SEQADV 6E0B A UNP Q08210 LYS 401 DELETION SEQADV 6E0B A UNP Q08210 ASN 402 DELETION SEQADV 6E0B A UNP Q08210 ASN 403 DELETION SEQADV 6E0B A UNP Q08210 SER 404 DELETION SEQADV 6E0B A UNP Q08210 HIS 405 DELETION SEQADV 6E0B A UNP Q08210 MET 406 DELETION SEQADV 6E0B A UNP Q08210 MET 407 DELETION SEQADV 6E0B A UNP Q08210 LYS 408 DELETION SEQADV 6E0B A UNP Q08210 ASP 409 DELETION SEQADV 6E0B A UNP Q08210 ALA 410 DELETION SEQADV 6E0B A UNP Q08210 LYS 411 DELETION SEQADV 6E0B A UNP Q08210 ASP 412 DELETION SEQADV 6E0B A UNP Q08210 ASN 413 DELETION SEQRES 1 A 401 MET GLY HIS HIS HIS HIS HIS HIS ALA GLU ASN LEU TYR SEQRES 2 A 401 PHE GLN GLY ALA ASP PRO PHE GLU SER TYR ASN PRO GLU SEQRES 3 A 401 PHE PHE LEU TYR ASP ILE PHE LEU LYS PHE CYS LEU LYS SEQRES 4 A 401 TYR ILE ASP GLY GLU ILE CYS HIS ASP LEU PHE LEU LEU SEQRES 5 A 401 LEU GLY LYS TYR ASN ILE LEU PRO TYR ASP THR SER ASN SEQRES 6 A 401 ASP SER ILE TYR ALA CYS THR ASN ILE LYS HIS LEU ASP SEQRES 7 A 401 PHE ILE ASN PRO PHE GLY VAL ALA ALA GLY PHE ASP LYS SEQRES 8 A 401 ASN GLY VAL CYS ILE ASP SER ILE LEU LYS LEU GLY PHE SEQRES 9 A 401 SER PHE ILE GLU ILE GLY THR ILE THR PRO ARG GLY GLN SEQRES 10 A 401 THR GLY ASN ALA LYS PRO ARG ILE PHE ARG ASP VAL GLU SEQRES 11 A 401 SER ARG SER ILE ILE ASN SER PHE GLY PHE ASN ASN MET SEQRES 12 A 401 GLY CYS ASP LYS VAL THR GLU ASN LEU ILE LEU PHE ARG SEQRES 13 A 401 LYS ARG GLN GLU GLU ASP LYS LEU LEU SER LYS HIS ILE SEQRES 14 A 401 VAL GLY VAL SER ILE GLY LYS ASN LYS ASP THR VAL ASN SEQRES 15 A 401 ILE VAL ASP ASP LEU LYS TYR CYS ILE ASN LYS ILE GLY SEQRES 16 A 401 ARG TYR ALA ASP TYR ILE ALA ILE ASN VAL SER SER PRO SEQRES 17 A 401 ASN THR PRO GLY LEU ARG ASP ASN GLN GLU ALA GLY LYS SEQRES 18 A 401 LEU LYS ASN ILE ILE LEU SER VAL LYS GLU GLU ILE ASP SEQRES 19 A 401 ASN LEU GLU LYS ASN ASN ILE MET ASN ASP GLU PHE LEU SEQRES 20 A 401 TRP PHE ASN THR THR LYS LYS LYS PRO LEU VAL PHE VAL SEQRES 21 A 401 LYS LEU ALA PRO ASP LEU ASN GLN GLU GLN LYS LYS GLU SEQRES 22 A 401 ILE ALA ASP VAL LEU LEU GLU THR ASN ILE ASP GLY MET SEQRES 23 A 401 ILE ILE SER ASN THR THR THR GLN ILE ASN ASP ILE LYS SEQRES 24 A 401 SER PHE GLU ASN LYS LYS GLY GLY VAL SER GLY ALA LYS SEQRES 25 A 401 LEU LYS ASP ILE SER THR LYS PHE ILE CYS GLU MET TYR SEQRES 26 A 401 ASN TYR THR ASN LYS GLN ILE PRO ILE ILE ALA SER GLY SEQRES 27 A 401 GLY ILE PHE SER GLY LEU ASP ALA LEU GLU LYS ILE GLU SEQRES 28 A 401 ALA GLY ALA SER VAL CYS GLN LEU TYR SER CYS LEU VAL SEQRES 29 A 401 PHE ASN GLY MET LYS SER ALA VAL GLN ILE LYS ARG GLU SEQRES 30 A 401 LEU ASN HIS LEU LEU TYR GLN ARG GLY TYR TYR ASN LEU SEQRES 31 A 401 LYS GLU ALA ILE GLY ARG LYS HIS SER LYS SER HET JZ8 A1001 34 HET FMN A1002 49 HET ORO A1003 14 HET GOL A1004 14 HET GOL A1005 14 HET GOL A1006 13 HET LDA A1007 31 HETNAM JZ8 5-METHYL-7-(NAPHTHALEN-2-YLAMINO)-1H-[1,2,4]TRIAZOLO[1, HETNAM 2 JZ8 5-A]PYRIMIDINE-3,8-DIIUM HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ORO OROTIC ACID HETNAM GOL GLYCEROL HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 JZ8 C16 H15 N5 2+ FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 ORO C5 H4 N2 O4 FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 LDA C14 H31 N O FORMUL 9 HOH *113(H2 O) HELIX 1 AA1 ASN A 162 ILE A 179 1 18 HELIX 2 AA2 ASP A 180 TYR A 194 1 15 HELIX 3 AA3 SER A 205 CYS A 209 5 5 HELIX 4 AA4 CYS A 233 LYS A 239 1 7 HELIX 5 AA5 GLY A 282 GLU A 298 1 17 HELIX 6 AA6 GLU A 299 SER A 304 5 6 HELIX 7 AA7 ASN A 320 GLY A 333 1 14 HELIX 8 AA8 ARG A 334 ALA A 336 5 3 HELIX 9 AA9 LEU A 351 GLN A 355 5 5 HELIX 10 AB1 GLU A 356 LYS A 376 1 21 HELIX 11 AB2 ASN A 381 TRP A 416 1 6 HELIX 12 AB3 ASN A 435 ASN A 450 1 16 HELIX 13 AB4 ILE A 466 GLU A 470 5 5 HELIX 14 AB5 LEU A 481 THR A 496 1 16 HELIX 15 AB6 SER A 510 GLY A 521 1 12 HELIX 16 AB7 TYR A 528 GLY A 535 1 8 HELIX 17 AB8 LYS A 537 ARG A 553 1 17 HELIX 18 AB9 LEU A 558 ILE A 562 5 5 SHEET 1 AA1 2 THR A 210 ILE A 212 0 SHEET 2 AA1 2 LEU A 215 PHE A 217 -1 O PHE A 217 N THR A 210 SHEET 1 AA2 9 PHE A 221 VAL A 223 0 SHEET 2 AA2 9 PHE A 244 ILE A 250 1 O GLU A 246 N VAL A 223 SHEET 3 AA2 9 ILE A 307 ILE A 312 1 O SER A 311 N ILE A 247 SHEET 4 AA2 9 TYR A 338 ASN A 342 1 O ALA A 340 N ILE A 312 SHEET 5 AA2 9 LEU A 425 LEU A 430 1 O LEU A 425 N ILE A 339 SHEET 6 AA2 9 GLY A 453 ILE A 456 1 O ILE A 455 N VAL A 428 SHEET 7 AA2 9 ILE A 502 SER A 505 1 O ILE A 503 N ILE A 456 SHEET 8 AA2 9 VAL A 524 LEU A 527 1 O VAL A 524 N ALA A 504 SHEET 9 AA2 9 PHE A 221 VAL A 223 1 N GLY A 222 O LEU A 527 SHEET 1 AA3 3 ILE A 263 ASP A 266 0 SHEET 2 AA3 3 SER A 271 ASN A 274 -1 O SER A 271 N ASP A 266 SHEET 3 AA3 3 GLY A 475 GLY A 478 -1 O SER A 477 N ILE A 272 CISPEP 1 GLY A 248 THR A 249 0 5.31 CISPEP 2 LYS A 260 PRO A 261 0 -3.09 CISPEP 3 ILE A 456 SER A 457 0 4.09 SITE 1 AC1 13 GLY A 181 CYS A 184 HIS A 185 PHE A 188 SITE 2 AC1 13 LEU A 189 LEU A 197 PHE A 227 ILE A 263 SITE 3 AC1 13 ARG A 265 LEU A 531 VAL A 532 MET A 536 SITE 4 AC1 13 HOH A1147 SITE 1 AC2 24 ALA A 224 ALA A 225 GLY A 226 LYS A 229 SITE 2 AC2 24 THR A 249 ILE A 263 ASN A 274 ASN A 342 SITE 3 AC2 24 LYS A 429 SER A 457 ASN A 458 SER A 477 SITE 4 AC2 24 GLY A 478 SER A 505 GLY A 506 GLY A 507 SITE 5 AC2 24 TYR A 528 SER A 529 ORO A1003 HOH A1104 SITE 6 AC2 24 HOH A1116 HOH A1120 HOH A1126 HOH A1153 SITE 1 AC3 11 LYS A 229 ASN A 274 PHE A 276 GLY A 277 SITE 2 AC3 11 PHE A 278 ASN A 342 SER A 345 ASN A 347 SITE 3 AC3 11 ASN A 458 THR A 459 FMN A1002 SITE 1 AC4 6 ARG A 253 THR A 318 VAL A 319 ASN A 320 SITE 2 AC4 6 ASP A 323 HOH A1117 SITE 1 AC5 5 VAL A 232 ASN A 289 LEU A 292 ARG A 296 SITE 2 AC5 5 HOH A1174 SITE 1 AC6 6 ASN A 162 GLU A 164 ASN A 195 PRO A 198 SITE 2 AC6 6 TYR A 199 LDA A1007 SITE 1 AC7 6 GLU A 164 ASN A 195 ILE A 196 LEU A 197 SITE 2 AC7 6 TYR A 199 GOL A1006 CRYST1 85.522 85.522 138.879 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011693 0.006751 0.000000 0.00000 SCALE2 0.000000 0.013502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007201 0.00000