HEADER TRANSFERASE 06-JUL-18 6E0K TITLE STRUCTURE OF RHODOTHERMUS MARINUS CDNE C-UMP-AMP SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGAS/DNCV-LIKE NUCLEOTIDYLTRANSFERASE IN E. COLI HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOTHERMUS MARINUS SG0.5JP17-172; SOURCE 3 ORGANISM_TAXID: 762570; SOURCE 4 GENE: RHOM172_2837; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CGAS, DNCV, CYCLIC DINUCLEOTIDE, NUCLEOTIDE SECOND MESSENGER, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.EAGLESHAM,A.T.WHITELEY,C.C.DE OLIVEIRA MANN,B.R.MOREHOUSE, AUTHOR 2 E.A.NIEMINEN,D.S.KING,A.S.Y.LEE,J.J.MEKALANOS,P.J.KRANZUSCH REVDAT 5 13-MAR-24 6E0K 1 REMARK REVDAT 4 18-DEC-19 6E0K 1 REMARK REVDAT 3 27-MAR-19 6E0K 1 JRNL REVDAT 2 06-MAR-19 6E0K 1 JRNL REVDAT 1 20-FEB-19 6E0K 0 JRNL AUTH A.T.WHITELEY,J.B.EAGLESHAM,C.C.DE OLIVEIRA MANN, JRNL AUTH 2 B.R.MOREHOUSE,B.LOWEY,E.A.NIEMINEN,O.DANILCHANKA,D.S.KING, JRNL AUTH 3 A.S.Y.LEE,J.J.MEKALANOS,P.J.KRANZUSCH JRNL TITL BACTERIAL CGAS-LIKE ENZYMES SYNTHESIZE DIVERSE NUCLEOTIDE JRNL TITL 2 SIGNALS. JRNL REF NATURE V. 567 194 2019 JRNL REFN ESSN 1476-4687 JRNL PMID 30787435 JRNL DOI 10.1038/S41586-019-0953-5 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 41847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3994 - 3.8518 1.00 3048 153 0.1552 0.1830 REMARK 3 2 3.8518 - 3.0577 1.00 2920 146 0.1573 0.1677 REMARK 3 3 3.0577 - 2.6713 1.00 2873 145 0.1680 0.1805 REMARK 3 4 2.6713 - 2.4272 1.00 2871 144 0.1702 0.1909 REMARK 3 5 2.4272 - 2.2532 1.00 2849 143 0.1665 0.1855 REMARK 3 6 2.2532 - 2.1204 1.00 2813 141 0.1611 0.1821 REMARK 3 7 2.1204 - 2.0142 1.00 2833 143 0.1620 0.1980 REMARK 3 8 2.0142 - 1.9265 1.00 2849 142 0.1741 0.1824 REMARK 3 9 1.9265 - 1.8524 1.00 2823 142 0.1705 0.1940 REMARK 3 10 1.8524 - 1.7884 1.00 2817 142 0.1598 0.1926 REMARK 3 11 1.7884 - 1.7325 1.00 2824 141 0.1711 0.2097 REMARK 3 12 1.7325 - 1.6830 1.00 2796 141 0.1686 0.2052 REMARK 3 13 1.6830 - 1.6387 1.00 2804 140 0.1707 0.2328 REMARK 3 14 1.6387 - 1.5987 0.97 2727 137 0.1851 0.2286 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2530 REMARK 3 ANGLE : 0.802 3427 REMARK 3 CHIRALITY : 0.051 341 REMARK 3 PLANARITY : 0.006 446 REMARK 3 DIHEDRAL : 12.491 1491 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8388 32.1476 51.2692 REMARK 3 T TENSOR REMARK 3 T11: 0.1256 T22: 0.1326 REMARK 3 T33: 0.1101 T12: -0.0030 REMARK 3 T13: -0.0122 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.8880 L22: 0.4205 REMARK 3 L33: 0.2333 L12: 0.1770 REMARK 3 L13: -0.4042 L23: 0.1216 REMARK 3 S TENSOR REMARK 3 S11: 0.0506 S12: 0.1088 S13: -0.0842 REMARK 3 S21: 0.0121 S22: 0.0450 S23: -0.0723 REMARK 3 S31: 0.0264 S32: 0.1483 S33: 0.0057 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8682 33.5997 59.1340 REMARK 3 T TENSOR REMARK 3 T11: 0.1412 T22: 0.1315 REMARK 3 T33: 0.1248 T12: -0.0060 REMARK 3 T13: -0.0096 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.2983 L22: 0.0531 REMARK 3 L33: 0.3005 L12: 0.1255 REMARK 3 L13: -0.2525 L23: -0.1638 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.0318 S13: 0.0314 REMARK 3 S21: 0.0054 S22: 0.0476 S23: 0.0511 REMARK 3 S31: -0.0947 S32: 0.0686 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5193 30.3211 84.3982 REMARK 3 T TENSOR REMARK 3 T11: 0.1334 T22: 0.1089 REMARK 3 T33: 0.1164 T12: -0.0019 REMARK 3 T13: -0.0219 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.8421 L22: 1.2905 REMARK 3 L33: 1.8251 L12: 0.0141 REMARK 3 L13: -0.7948 L23: -0.6500 REMARK 3 S TENSOR REMARK 3 S11: -0.0374 S12: -0.1792 S13: -0.0100 REMARK 3 S21: 0.2084 S22: 0.0387 S23: -0.0606 REMARK 3 S31: -0.2042 S32: 0.1294 S33: 0.0240 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0984 45.0742 63.6545 REMARK 3 T TENSOR REMARK 3 T11: 0.2101 T22: 0.1458 REMARK 3 T33: 0.1505 T12: -0.0371 REMARK 3 T13: -0.0008 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.5914 L22: 0.1287 REMARK 3 L33: 0.9971 L12: -0.2732 REMARK 3 L13: -0.4086 L23: 0.1044 REMARK 3 S TENSOR REMARK 3 S11: 0.1638 S12: -0.0795 S13: 0.1675 REMARK 3 S21: 0.1458 S22: 0.0189 S23: -0.0812 REMARK 3 S31: -0.6556 S32: 0.0760 S33: 0.1196 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3577 35.6556 66.8406 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.1251 REMARK 3 T33: 0.1105 T12: -0.0121 REMARK 3 T13: 0.0056 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.7855 L22: 0.1546 REMARK 3 L33: 1.1992 L12: -0.1796 REMARK 3 L13: -0.3152 L23: 0.1698 REMARK 3 S TENSOR REMARK 3 S11: 0.0285 S12: -0.0513 S13: 0.0290 REMARK 3 S21: 0.0834 S22: 0.1356 S23: 0.0381 REMARK 3 S31: -0.0537 S32: -0.1899 S33: 0.0546 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3916 26.5824 61.8704 REMARK 3 T TENSOR REMARK 3 T11: 0.1297 T22: 0.1453 REMARK 3 T33: 0.1329 T12: -0.0026 REMARK 3 T13: 0.0038 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.4653 L22: 0.2606 REMARK 3 L33: 0.2603 L12: 0.2692 REMARK 3 L13: 0.3439 L23: 0.0879 REMARK 3 S TENSOR REMARK 3 S11: 0.0532 S12: -0.0456 S13: -0.0399 REMARK 3 S21: 0.0437 S22: -0.0604 S23: 0.0489 REMARK 3 S31: 0.0433 S32: -0.0236 S33: -0.0066 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7454 29.5657 47.0616 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.0995 REMARK 3 T33: 0.1134 T12: -0.0098 REMARK 3 T13: -0.0166 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.0592 L22: 0.4649 REMARK 3 L33: 0.6624 L12: 0.0304 REMARK 3 L13: -0.1817 L23: 0.2701 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: 0.1766 S13: 0.2186 REMARK 3 S21: -0.0076 S22: -0.0746 S23: -0.0381 REMARK 3 S31: -0.0589 S32: 0.0511 S33: -0.0245 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8373 24.2272 53.0174 REMARK 3 T TENSOR REMARK 3 T11: 0.1141 T22: 0.1089 REMARK 3 T33: 0.1428 T12: 0.0007 REMARK 3 T13: -0.0112 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.2306 L22: 0.5671 REMARK 3 L33: 0.8148 L12: -0.0550 REMARK 3 L13: -0.1453 L23: -0.3821 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: -0.0099 S13: -0.0883 REMARK 3 S21: 0.0085 S22: 0.0398 S23: 0.1584 REMARK 3 S31: -0.0237 S32: 0.0013 S33: 0.0142 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7855 28.6711 66.9685 REMARK 3 T TENSOR REMARK 3 T11: 0.2578 T22: 0.2878 REMARK 3 T33: 0.1647 T12: 0.0133 REMARK 3 T13: 0.0138 T23: -0.0473 REMARK 3 L TENSOR REMARK 3 L11: 2.0897 L22: 2.4931 REMARK 3 L33: 1.3005 L12: 0.4806 REMARK 3 L13: 0.1727 L23: -1.3612 REMARK 3 S TENSOR REMARK 3 S11: -0.0481 S12: -0.9416 S13: 0.3211 REMARK 3 S21: 0.6711 S22: 0.0687 S23: 0.1272 REMARK 3 S31: -0.4442 S32: -0.1000 S33: 0.1451 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 269 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1018 31.9465 46.3673 REMARK 3 T TENSOR REMARK 3 T11: 0.1273 T22: 0.1653 REMARK 3 T33: 0.1914 T12: 0.0175 REMARK 3 T13: 0.0077 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.7118 L22: 0.5458 REMARK 3 L33: 0.9248 L12: -0.6657 REMARK 3 L13: 0.2016 L23: -0.2540 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: -0.0389 S13: -0.1212 REMARK 3 S21: -0.0222 S22: 0.0905 S23: 0.1393 REMARK 3 S31: -0.0502 S32: -0.2521 S33: 0.1406 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41925 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 37.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% ETHANOL, 100 MM TRIS-HCL PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.26500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.60650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.16500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.60650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.26500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.16500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 523 O HOH A 642 1.83 REMARK 500 O HOH A 544 O HOH A 640 1.92 REMARK 500 NH1 ARG A 113 O HOH A 301 2.04 REMARK 500 OE1 GLN A 207 O HOH A 302 2.10 REMARK 500 O HOH A 314 O HOH A 643 2.11 REMARK 500 O HOH A 313 O HOH A 526 2.12 REMARK 500 O HOH A 406 O HOH A 476 2.12 REMARK 500 NZ LYS A 117 O HOH A 303 2.17 REMARK 500 O HOH A 511 O HOH A 692 2.17 REMARK 500 O HOH A 431 O HOH A 581 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 376 O HOH A 396 3646 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 38 38.18 -142.56 REMARK 500 TYR A 125 -99.11 -110.65 REMARK 500 ASN A 142 -157.96 66.67 REMARK 500 ALA A 210 86.58 -159.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 742 DISTANCE = 6.67 ANGSTROMS DBREF 6E0K A 1 288 UNP G2SLH8 G2SLH8_RHOMR 1 288 SEQADV 6E0K GLY A 289 UNP G2SLH8 EXPRESSION TAG SEQADV 6E0K SER A 290 UNP G2SLH8 EXPRESSION TAG SEQADV 6E0K HIS A 291 UNP G2SLH8 EXPRESSION TAG SEQADV 6E0K HIS A 292 UNP G2SLH8 EXPRESSION TAG SEQADV 6E0K HIS A 293 UNP G2SLH8 EXPRESSION TAG SEQADV 6E0K HIS A 294 UNP G2SLH8 EXPRESSION TAG SEQADV 6E0K HIS A 295 UNP G2SLH8 EXPRESSION TAG SEQADV 6E0K HIS A 296 UNP G2SLH8 EXPRESSION TAG SEQRES 1 A 296 MET PRO VAL PRO GLU SER GLN LEU GLU ARG TRP SER HIS SEQRES 2 A 296 GLN GLY ALA THR THR THR ALA LYS LYS THR HIS GLU SER SEQRES 3 A 296 ILE ARG ALA ALA LEU ASP ARG TYR LYS TRP PRO LYS GLY SEQRES 4 A 296 LYS PRO GLU VAL TYR LEU GLN GLY SER TYR LYS ASN SER SEQRES 5 A 296 THR ASN ILE ARG GLY ASP SER ASP VAL ASP VAL VAL VAL SEQRES 6 A 296 GLN LEU ASN SER VAL PHE MET ASN ASN LEU THR ALA GLU SEQRES 7 A 296 GLN LYS ARG ARG PHE GLY PHE VAL LYS SER ASP TYR THR SEQRES 8 A 296 TRP ASN ASP PHE TYR SER ASP VAL GLU ARG ALA LEU THR SEQRES 9 A 296 ASP TYR TYR GLY ALA SER LYS VAL ARG ARG GLY ARG LYS SEQRES 10 A 296 THR LEU LYS VAL GLU THR THR TYR LEU PRO ALA ASP VAL SEQRES 11 A 296 VAL VAL CYS ILE GLN TYR ARG LYS TYR PRO PRO ASN ARG SEQRES 12 A 296 LYS SER GLU ASP ASP TYR ILE GLU GLY MET THR PHE TYR SEQRES 13 A 296 VAL PRO SER GLU ASP ARG TRP VAL VAL ASN TYR PRO LYS SEQRES 14 A 296 LEU HIS TYR GLU ASN GLY ALA ALA LYS ASN GLN GLN THR SEQRES 15 A 296 ASN GLU TRP TYR LYS PRO THR ILE ARG MET PHE LYS ASN SEQRES 16 A 296 ALA ARG THR TYR LEU ILE GLU GLN GLY ALA PRO GLN ASP SEQRES 17 A 296 LEU ALA PRO SER TYR PHE LEU GLU CYS LEU LEU TYR ASN SEQRES 18 A 296 VAL PRO ASP SER LYS PHE GLY GLY THR PHE LYS ASP THR SEQRES 19 A 296 PHE CYS SER VAL ILE ASN TRP LEU LYS ARG ALA ASP LEU SEQRES 20 A 296 SER LYS PHE ARG CYS GLN ASN GLY GLN ASP ASP LEU PHE SEQRES 21 A 296 GLY GLU PHE PRO GLU GLN TRP SER GLU GLU LYS ALA ARG SEQRES 22 A 296 ARG PHE LEU ARG TYR MET ASP ASP LEU TRP THR GLY TRP SEQRES 23 A 296 GLY GLN GLY SER HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *442(H2 O) HELIX 1 AA1 PRO A 4 SER A 12 1 9 HELIX 2 AA2 THR A 17 ARG A 33 1 17 HELIX 3 AA3 GLN A 46 ASN A 51 1 6 HELIX 4 AA4 THR A 76 PHE A 83 1 8 HELIX 5 AA5 THR A 91 GLY A 108 1 18 HELIX 6 AA6 TYR A 167 THR A 182 1 16 HELIX 7 AA7 TRP A 185 GLN A 203 1 19 HELIX 8 AA8 PRO A 211 ASN A 221 1 11 HELIX 9 AA9 VAL A 222 PHE A 227 5 6 HELIX 10 AB1 THR A 230 ALA A 245 1 16 HELIX 11 AB2 ASP A 246 PHE A 250 5 5 HELIX 12 AB3 SER A 268 TRP A 286 1 19 HELIX 13 AB4 HIS A 292 HIS A 296 5 5 SHEET 1 AA1 5 GLU A 42 LEU A 45 0 SHEET 2 AA1 5 VAL A 61 ASN A 73 -1 O VAL A 64 N TYR A 44 SHEET 3 AA1 5 PRO A 127 LYS A 138 1 O ASP A 129 N VAL A 61 SHEET 4 AA1 5 LEU A 119 GLU A 122 -1 N LEU A 119 O VAL A 130 SHEET 5 AA1 5 VAL A 112 ARG A 114 -1 N ARG A 113 O LYS A 120 SHEET 1 AA2 5 GLU A 42 LEU A 45 0 SHEET 2 AA2 5 VAL A 61 ASN A 73 -1 O VAL A 64 N TYR A 44 SHEET 3 AA2 5 PRO A 127 LYS A 138 1 O ASP A 129 N VAL A 61 SHEET 4 AA2 5 ILE A 150 TYR A 156 -1 O GLY A 152 N TYR A 136 SHEET 5 AA2 5 TRP A 163 ASN A 166 -1 O VAL A 164 N PHE A 155 CRYST1 52.530 66.330 89.213 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019037 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015076 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011209 0.00000