HEADER TRANSFERASE/RNA 06-JUL-18 6E0O TITLE STRUCTURE OF ELIZABETHKINGIA MENINGOSEPTICA CDNE CYCLIC DINUCLEOTIDE TITLE 2 SYNTHASE WITH PPPA[3'-5']PA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGAS/DNCV-LIKE NUCLEOTIDYLTRANSFERASE IN E. COLI HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (5'-D(*(ATP))-R(P*A)-3'); COMPND 7 CHAIN: C, B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ELIZABETHKINGIA MENINGOSEPTICA ATCC 13253 = SOURCE 3 NBRC 12535; SOURCE 4 ORGANISM_TAXID: 1216967; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: ELIZABETHKINGIA MENINGOSEPTICA ATCC 13253 = SOURCE 10 NBRC 12535; SOURCE 11 ORGANISM_TAXID: 1216967 KEYWDS CGAS, DNCV, CYCLIC DINUCLEOTIDE, NUCLEOTIDE SECOND MESSENGER, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.B.EAGLESHAM,A.T.WHITELEY,C.C.DE OLIVEIRA MANN,B.R.MOREHOUSE, AUTHOR 2 E.A.NIEMINEN,D.S.KING,A.S.Y.LEE,J.J.MEKALANOS,P.J.KRANZUSCH REVDAT 5 13-MAR-24 6E0O 1 LINK REVDAT 4 18-DEC-19 6E0O 1 REMARK REVDAT 3 27-MAR-19 6E0O 1 JRNL REVDAT 2 06-MAR-19 6E0O 1 JRNL REVDAT 1 20-FEB-19 6E0O 0 JRNL AUTH A.T.WHITELEY,J.B.EAGLESHAM,C.C.DE OLIVEIRA MANN, JRNL AUTH 2 B.R.MOREHOUSE,B.LOWEY,E.A.NIEMINEN,O.DANILCHANKA,D.S.KING, JRNL AUTH 3 A.S.Y.LEE,J.J.MEKALANOS,P.J.KRANZUSCH JRNL TITL BACTERIAL CGAS-LIKE ENZYMES SYNTHESIZE DIVERSE NUCLEOTIDE JRNL TITL 2 SIGNALS. JRNL REF NATURE V. 567 194 2019 JRNL REFN ESSN 1476-4687 JRNL PMID 30787435 JRNL DOI 10.1038/S41586-019-0953-5 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 92824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.870 REMARK 3 FREE R VALUE TEST SET COUNT : 3592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8307 - 3.6791 1.00 3741 147 0.1678 0.1830 REMARK 3 2 3.6791 - 2.9205 1.00 3572 147 0.1476 0.1531 REMARK 3 3 2.9205 - 2.5515 1.00 3538 145 0.1450 0.1472 REMARK 3 4 2.5515 - 2.3182 1.00 3546 143 0.1307 0.1536 REMARK 3 5 2.3182 - 2.1521 1.00 3497 141 0.1224 0.1468 REMARK 3 6 2.1521 - 2.0252 1.00 3513 138 0.1268 0.1465 REMARK 3 7 2.0252 - 1.9238 1.00 3495 146 0.1267 0.1619 REMARK 3 8 1.9238 - 1.8400 1.00 3477 142 0.1300 0.1487 REMARK 3 9 1.8400 - 1.7692 1.00 3474 136 0.1258 0.1609 REMARK 3 10 1.7692 - 1.7082 1.00 3475 140 0.1228 0.1460 REMARK 3 11 1.7082 - 1.6547 1.00 3466 141 0.1182 0.1579 REMARK 3 12 1.6547 - 1.6074 1.00 3467 133 0.1132 0.1394 REMARK 3 13 1.6074 - 1.5651 1.00 3465 142 0.1110 0.1259 REMARK 3 14 1.5651 - 1.5269 1.00 3460 140 0.1114 0.1375 REMARK 3 15 1.5269 - 1.4922 1.00 3451 135 0.1169 0.1491 REMARK 3 16 1.4922 - 1.4605 1.00 3442 141 0.1205 0.1520 REMARK 3 17 1.4605 - 1.4312 1.00 3461 141 0.1320 0.1782 REMARK 3 18 1.4312 - 1.4042 1.00 3453 138 0.1514 0.2034 REMARK 3 19 1.4042 - 1.3792 1.00 3470 133 0.1699 0.2104 REMARK 3 20 1.3792 - 1.3558 1.00 3415 140 0.1815 0.2707 REMARK 3 21 1.3558 - 1.3339 1.00 3474 135 0.1761 0.2095 REMARK 3 22 1.3339 - 1.3134 1.00 3414 146 0.1835 0.2283 REMARK 3 23 1.3134 - 1.2941 1.00 3442 138 0.1913 0.2457 REMARK 3 24 1.2941 - 1.2758 1.00 3446 135 0.1941 0.2191 REMARK 3 25 1.2758 - 1.2586 1.00 3424 145 0.2103 0.2304 REMARK 3 26 1.2586 - 1.2423 0.63 2154 84 0.2377 0.2954 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2448 REMARK 3 ANGLE : 1.041 3337 REMARK 3 CHIRALITY : 0.070 362 REMARK 3 PLANARITY : 0.005 421 REMARK 3 DIHEDRAL : 18.954 922 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E0O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235527. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92915 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 37.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG-3350, 100 MM TRISODIUM CITRATE REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.59750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.72300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.11550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.72300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.59750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.11550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 77 REMARK 465 ARG A 78 REMARK 465 LEU A 79 REMARK 465 SER A 80 REMARK 465 GLU A 81 REMARK 465 SER A 82 REMARK 465 ASP A 83 REMARK 465 LYS A 84 REMARK 465 ALA A 85 REMARK 465 ILE A 86 REMARK 465 TYR A 87 REMARK 465 ASN A 88 REMARK 465 ALA A 89 REMARK 465 GLN A 90 REMARK 465 ARG A 91 REMARK 465 THR A 92 REMARK 465 TYR A 93 REMARK 465 SER A 94 REMARK 465 GLY A 95 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN A 40 O HOH A 401 1.13 REMARK 500 HE ARG A 241 O HOH A 410 1.55 REMARK 500 O4' ATP C 1 O HOH C 201 1.81 REMARK 500 O HOH A 440 O HOH A 561 1.81 REMARK 500 ND2 ASN A 40 O HOH A 401 1.83 REMARK 500 O HOH A 408 O HOH A 551 1.87 REMARK 500 O HOH A 408 O HOH A 520 1.88 REMARK 500 O HOH A 678 O HOH A 747 1.88 REMARK 500 O HOH A 569 O HOH A 677 1.95 REMARK 500 OD1 ASN A 40 O HOH A 402 1.99 REMARK 500 O HOH A 689 O HOH A 724 2.00 REMARK 500 O HOH A 688 O HOH A 706 2.01 REMARK 500 O HOH A 623 O HOH A 655 2.02 REMARK 500 OD1 ASP A 205 O HOH A 403 2.06 REMARK 500 O HOH A 455 O HOH A 718 2.11 REMARK 500 OG SER A 169 O HOH A 404 2.14 REMARK 500 O HOH A 440 O HOH A 484 2.19 REMARK 500 O HOH A 431 O HOH A 658 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 576 O HOH A 613 3656 1.86 REMARK 500 O HOH A 567 O HOH A 720 3656 2.02 REMARK 500 O HOH A 685 O HOH A 727 3656 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A B 2 O3' - P - O5' ANGL. DEV. = -33.4 DEGREES REMARK 500 A B 2 O3' - P - OP1 ANGL. DEV. = -45.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 69 22.99 -145.60 REMARK 500 THR A 114 -114.87 41.02 REMARK 500 ASN A 164 13.00 83.81 REMARK 500 PHE A 267 46.38 -98.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 758 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 759 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 760 DISTANCE = 6.19 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 OD2 REMARK 620 2 HOH A 441 O 86.3 REMARK 620 3 HOH A 451 O 80.7 90.3 REMARK 620 4 ATP C 1 O3G 174.1 96.9 94.4 REMARK 620 5 ATP C 1 O1B 93.6 178.1 87.9 82.9 REMARK 620 6 ATP C 1 O1A 92.7 97.6 169.4 91.7 84.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide ATP B 1 and A B 2 DBREF 6E0O A 1 292 PDB 6E0O 6E0O 1 292 DBREF 6E0O C 1 2 PDB 6E0O 6E0O 1 2 DBREF 6E0O B 1 2 PDB 6E0O 6E0O 1 2 SEQRES 1 A 292 MET ASN PHE SER GLU GLN GLN LEU ILE ASN TRP SER ARG SEQRES 2 A 292 PRO VAL SER THR THR GLU ASP LEU LYS CYS GLN ASN ALA SEQRES 3 A 292 ILE THR GLN ILE THR ALA ALA LEU ARG ALA LYS PHE GLY SEQRES 4 A 292 ASN ARG VAL THR ILE PHE LEU GLN GLY SER TYR ARG ASN SEQRES 5 A 292 ASN THR ASN VAL ARG GLN ASN SER ASP VAL ASP ILE VAL SEQRES 6 A 292 MET ARG TYR ASP ASP ALA PHE TYR PRO ASP LEU GLN ARG SEQRES 7 A 292 LEU SER GLU SER ASP LYS ALA ILE TYR ASN ALA GLN ARG SEQRES 8 A 292 THR TYR SER GLY TYR ASN PHE ASP GLU LEU LYS ALA ASP SEQRES 9 A 292 THR GLU GLU ALA LEU ARG ASN VAL PHE THR THR SER VAL SEQRES 10 A 292 GLU ARG LYS ASN LYS CYS ILE GLN VAL ASN GLY ASN SER SEQRES 11 A 292 ASN ARG ILE THR ALA ASP VAL ILE PRO CYS PHE VAL LEU SEQRES 12 A 292 LYS ARG PHE SER THR LEU GLN SER VAL GLU ALA GLU GLY SEQRES 13 A 292 ILE LYS PHE TYR SER ASP ASP ASN LYS GLU ILE ILE SER SEQRES 14 A 292 PHE PRO GLU GLN HIS TYR SER ASN GLY THR GLU LYS THR SEQRES 15 A 292 ASN GLN THR TYR ARG LEU TYR LYS ARG MET VAL ARG ILE SEQRES 16 A 292 LEU LYS VAL VAL ASN TYR ARG LEU ILE ASP ASP GLY GLU SEQRES 17 A 292 ILE ALA ASP ASN LEU VAL SER SER PHE PHE ILE GLU CYS SEQRES 18 A 292 LEU VAL TYR ASN VAL PRO ASN ASN GLN PHE ILE SER GLY SEQRES 19 A 292 ASN TYR THR GLN THR LEU ARG ASN VAL ILE VAL LYS ILE SEQRES 20 A 292 TYR GLU ASP MET LYS ASN ASN ALA ASP TYR THR GLU VAL SEQRES 21 A 292 ASN ARG LEU PHE TRP LEU PHE SER ASN ARG SER PRO ARG SEQRES 22 A 292 THR ARG GLN ASP ALA LEU GLY PHE MET GLN LYS CYS TRP SEQRES 23 A 292 ASN TYR LEU GLY TYR GLN SEQRES 1 C 2 ATP A SEQRES 1 B 2 ATP A HET ATP C 1 42 HET ATP B 1 42 HET MG A 301 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 MG MG 2+ FORMUL 5 HOH *377(H2 O) HELIX 1 AA1 SER A 4 SER A 12 1 9 HELIX 2 AA2 ASP A 20 GLY A 39 1 20 HELIX 3 AA3 GLY A 48 ASN A 53 1 6 HELIX 4 AA4 ASN A 97 THR A 114 1 18 HELIX 5 AA5 PHE A 170 THR A 185 1 16 HELIX 6 AA6 ARG A 187 ASP A 206 1 20 HELIX 7 AA7 SER A 215 ASN A 225 1 11 HELIX 8 AA8 VAL A 226 PHE A 231 5 6 HELIX 9 AA9 ASN A 235 ASN A 253 1 19 HELIX 10 AB1 THR A 274 GLY A 290 1 17 SHEET 1 AA1 5 VAL A 42 GLN A 47 0 SHEET 2 AA1 5 VAL A 62 TYR A 68 -1 O VAL A 65 N PHE A 45 SHEET 3 AA1 5 ALA A 135 SER A 147 1 O CYS A 140 N TYR A 68 SHEET 4 AA1 5 ILE A 124 VAL A 126 -1 N VAL A 126 O ALA A 135 SHEET 5 AA1 5 VAL A 117 ARG A 119 -1 N GLU A 118 O GLN A 125 SHEET 1 AA2 5 VAL A 42 GLN A 47 0 SHEET 2 AA2 5 VAL A 62 TYR A 68 -1 O VAL A 65 N PHE A 45 SHEET 3 AA2 5 ALA A 135 SER A 147 1 O CYS A 140 N TYR A 68 SHEET 4 AA2 5 VAL A 152 TYR A 160 -1 O VAL A 152 N SER A 147 SHEET 5 AA2 5 GLU A 166 SER A 169 -1 O ILE A 167 N PHE A 159 LINK O3' ATP C 1 P A C 2 1555 1555 1.56 LINK O3' ATP B 1 P A B 2 1555 1555 1.56 LINK OD2 ASP A 63 MG MG A 301 1555 1555 2.12 LINK MG MG A 301 O HOH A 441 1555 1555 2.03 LINK MG MG A 301 O HOH A 451 1555 1555 2.11 LINK MG MG A 301 O3G ATP C 1 1555 1555 2.12 LINK MG MG A 301 O1B ATP C 1 1555 1555 2.02 LINK MG MG A 301 O1A ATP C 1 1555 1555 1.99 SITE 1 AC1 4 ASP A 63 HOH A 441 HOH A 451 ATP C 1 SITE 1 AC2 16 PRO A 14 ASN A 53 ARG A 145 PHE A 146 SITE 2 AC2 16 ARG A 187 ARG A 191 ARG A 194 ARG A 270 SITE 3 AC2 16 HOH A 450 HOH B 101 HOH B 102 HOH B 103 SITE 4 AC2 16 HOH B 104 HOH B 105 HOH B 106 HOH B 107 CRYST1 57.195 58.231 99.446 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017484 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010056 0.00000