HEADER LIGASE 10-JUL-18 6E1Q TITLE ATGH3.15 ACYL ACID AMIDO SYNTHETASE IN COMPLEX WITH 2,4-DB COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATGH3.15 ACYL ACID AMIDO SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AUXIN-RESPONSIVE GH3 FAMILY PROTEIN, PUTATIVE AUXIN COMPND 5 RESPONSIVE PROTEIN, AT5G13370; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT5G13370, AT5G13370/T22N19_20, T22N19.20, T22N19_20; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HORMONE MODIFICATION, ADENYLATING ENZYME, ACYL ACID-AMIDO SYNTHETASE, KEYWDS 2 ADENYLATION, LIGASE, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.M.SHARP,S.G.LEE,J.M.JEZ REVDAT 4 11-OCT-23 6E1Q 1 REMARK REVDAT 3 27-NOV-19 6E1Q 1 REMARK REVDAT 2 28-NOV-18 6E1Q 1 JRNL REVDAT 1 24-OCT-18 6E1Q 0 JRNL AUTH A.M.SHERP,S.G.LEE,E.SCHRAFT,J.M.JEZ JRNL TITL MODIFICATION OF AUXINIC PHENOXYALKANOIC ACID HERBICIDES BY JRNL TITL 2 THE ACYL ACID AMIDO SYNTHETASE GH3.15 FROM ARABIDOPSIS. JRNL REF J. BIOL. CHEM. V. 293 17731 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30315112 JRNL DOI 10.1074/JBC.RA118.004975 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 47873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.180 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7035 - 5.1735 0.99 3452 144 0.1760 0.1984 REMARK 3 2 5.1735 - 4.1078 1.00 3345 148 0.1438 0.1619 REMARK 3 3 4.1078 - 3.5890 0.99 3295 148 0.1585 0.2128 REMARK 3 4 3.5890 - 3.2611 1.00 3303 144 0.1777 0.2007 REMARK 3 5 3.2611 - 3.0274 1.00 3289 142 0.1937 0.2424 REMARK 3 6 3.0274 - 2.8490 1.00 3271 142 0.2008 0.2229 REMARK 3 7 2.8490 - 2.7063 0.99 3236 140 0.2019 0.2474 REMARK 3 8 2.7063 - 2.5886 1.00 3258 147 0.2108 0.2275 REMARK 3 9 2.5886 - 2.4889 1.00 3268 140 0.2075 0.2594 REMARK 3 10 2.4889 - 2.4031 1.00 3263 141 0.2162 0.2615 REMARK 3 11 2.4031 - 2.3279 0.99 3241 143 0.2202 0.2439 REMARK 3 12 2.3279 - 2.2614 1.00 3226 140 0.2219 0.2642 REMARK 3 13 2.2614 - 2.2019 1.00 3243 139 0.2232 0.2709 REMARK 3 14 2.2019 - 2.1481 0.98 3183 142 0.2314 0.2476 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4683 REMARK 3 ANGLE : 0.919 6363 REMARK 3 CHIRALITY : 0.055 724 REMARK 3 PLANARITY : 0.006 810 REMARK 3 DIHEDRAL : 2.572 4999 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1533 -66.4898 18.8904 REMARK 3 T TENSOR REMARK 3 T11: 0.3228 T22: 0.3264 REMARK 3 T33: 0.3199 T12: -0.0321 REMARK 3 T13: -0.0457 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.7815 L22: 5.8620 REMARK 3 L33: 1.7637 L12: 0.6364 REMARK 3 L13: 0.2620 L23: 1.8173 REMARK 3 S TENSOR REMARK 3 S11: 0.1799 S12: -0.2236 S13: -0.1694 REMARK 3 S21: 0.7393 S22: -0.1292 S23: -0.3049 REMARK 3 S31: 0.3283 S32: 0.1224 S33: -0.0378 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 427 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6802 -50.6808 4.0514 REMARK 3 T TENSOR REMARK 3 T11: 0.2388 T22: 0.2475 REMARK 3 T33: 0.2170 T12: -0.0172 REMARK 3 T13: 0.0162 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 1.2330 L22: 0.6794 REMARK 3 L33: 1.3274 L12: -0.1384 REMARK 3 L13: 0.5891 L23: -0.1899 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: -0.1134 S13: -0.0301 REMARK 3 S21: 0.0625 S22: 0.0314 S23: -0.0027 REMARK 3 S31: -0.1234 S32: -0.1127 S33: -0.0064 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 428 THROUGH 587 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5313 -50.5611 -17.1540 REMARK 3 T TENSOR REMARK 3 T11: 0.3626 T22: 0.2769 REMARK 3 T33: 0.3787 T12: -0.0749 REMARK 3 T13: 0.0662 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 3.5228 L22: 3.6926 REMARK 3 L33: 2.4297 L12: 2.9113 REMARK 3 L13: -1.3475 L23: -1.5754 REMARK 3 S TENSOR REMARK 3 S11: -0.6199 S12: 0.4934 S13: -0.3685 REMARK 3 S21: -0.7083 S22: 0.3492 S23: -0.5120 REMARK 3 S31: 0.3817 S32: -0.0119 S33: 0.1412 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47900 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.148 REMARK 200 RESOLUTION RANGE LOW (A) : 38.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.55700 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 6AVH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M POTASSIUM PHOSPHATE DIBASIC, 0.8 REMARK 280 M SODIUM PHOSPHATE MONOBASIC, 0.1 M SODIUM ACETATE/ACETIC ACID, REMARK 280 2.5 MM 2,4-DB, PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.71200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.71200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 76.89900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.39450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 76.89900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.39450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.71200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 76.89900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.39450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.71200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 76.89900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.39450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ND2 ASN A 174 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 175 REMARK 465 PHE A 176 REMARK 465 LEU A 177 REMARK 465 TRP A 178 REMARK 465 ASP A 179 REMARK 465 LYS A 364 REMARK 465 ASP A 365 REMARK 465 HIS A 366 REMARK 465 GLN A 367 REMARK 465 GLU A 368 REMARK 465 ALA A 369 REMARK 465 GLY A 370 REMARK 465 HIS A 371 REMARK 465 ASP A 372 REMARK 465 PRO A 373 REMARK 465 THR A 374 REMARK 465 GLU A 375 REMARK 465 LYS A 376 REMARK 465 LEU A 588 REMARK 465 HIS A 589 REMARK 465 GLU A 590 REMARK 465 LEU A 591 REMARK 465 HIS A 592 REMARK 465 SER A 593 REMARK 465 GLY A 594 REMARK 465 ARG A 595 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 766 O HOH A 963 1.87 REMARK 500 OG1 THR A 254 O HOH A 701 1.91 REMARK 500 OD1 ASP A 134 O HOH A 702 1.91 REMARK 500 NZ LYS A 25 O HOH A 703 1.92 REMARK 500 O HOH A 726 O HOH A 738 1.98 REMARK 500 O HOH A 745 O HOH A 889 1.98 REMARK 500 NE ARG A 149 O HOH A 704 2.04 REMARK 500 O HOH A 747 O HOH A 943 2.06 REMARK 500 OE1 GLU A 116 O HOH A 705 2.08 REMARK 500 O ALA A 491 O HOH A 706 2.10 REMARK 500 OE2 GLU A 564 O HOH A 707 2.11 REMARK 500 O ILE A 119 OG SER A 122 2.11 REMARK 500 OE2 GLU A 361 O HOH A 708 2.11 REMARK 500 O HOH A 904 O HOH A 962 2.13 REMARK 500 NH1 ARG A 468 OH TYR A 481 2.13 REMARK 500 OD1 ASP A 252 O HOH A 709 2.14 REMARK 500 O HOH A 888 O HOH A 904 2.15 REMARK 500 NE2 GLN A 172 O HOH A 710 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG ASN A 174 ND2 ASN A 174 3555 1.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 102 N - CA - C ANGL. DEV. = -26.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 51.20 -93.15 REMARK 500 SER A 101 92.13 -165.07 REMARK 500 THR A 173 42.90 -149.92 REMARK 500 ASN A 417 -117.07 49.86 REMARK 500 ASP A 435 -85.76 -142.43 REMARK 500 SER A 472 -81.95 -55.53 REMARK 500 SER A 473 -177.70 -65.80 REMARK 500 PHE A 474 -74.76 -25.04 REMARK 500 ASN A 521 -68.83 -98.16 REMARK 500 ILE A 575 -72.38 -92.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CFA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CFA A 603 DBREF 6E1Q A 1 595 UNP Q8GZ29 Q8GZ29_ARATH 1 595 SEQRES 1 A 595 MET LEU PRO LYS PHE ASP PRO THR ASN GLN LYS ALA CYS SEQRES 2 A 595 LEU SER LEU LEU GLU ASP LEU THR THR ASN VAL LYS GLN SEQRES 3 A 595 ILE GLN ASP SER VAL LEU GLU ALA ILE LEU SER ARG ASN SEQRES 4 A 595 ALA GLN THR GLU TYR LEU ARG GLY PHE LEU ASN GLY GLN SEQRES 5 A 595 VAL ASP LYS GLN ASN PHE LYS LYS ASN VAL PRO VAL VAL SEQRES 6 A 595 THR TYR GLU ASP ILE ARG SER TYR ILE ASP ARG ILE ALA SEQRES 7 A 595 ASN GLY GLU PRO SER ASP LEU ILE CYS ASP ARG PRO ILE SEQRES 8 A 595 SER VAL LEU LEU THR SER SER GLY THR SER GLY GLY VAL SEQRES 9 A 595 PRO LYS LEU ILE PRO LEU THR THR GLU ASP LEU GLU GLN SEQRES 10 A 595 ARG ILE SER PHE SER SER LEU TYR ALA PRO LEU LEU TYR SEQRES 11 A 595 LYS HIS ILE ASP GLY LEU SER GLU GLY LYS SER LEU ILE SEQRES 12 A 595 PHE TYR PHE VAL THR ARG GLU SER LYS THR ALA ASN GLY SEQRES 13 A 595 LEU MET VAL ARG THR MET VAL THR SER PHE LEU LYS SER SEQRES 14 A 595 ILE LYS GLN THR ASN SER PHE LEU TRP ASP SER LEU GLN SEQRES 15 A 595 VAL SER PRO HIS ALA ILE THR THR CYS ALA ASP THR THR SEQRES 16 A 595 GLN SER MET TYR CYS GLN LEU LEU CYS GLY LEU LEU GLU SEQRES 17 A 595 ARG ASP ASN VAL ALA ARG LEU GLY ALA PRO PHE ALA SER SEQRES 18 A 595 SER PHE LEU LYS VAL ILE LYS PHE LEU GLU ASP HIS TRP SEQRES 19 A 595 PRO GLU LEU CYS SER ASN ILE ARG THR GLY ARG LEU SER SEQRES 20 A 595 ASP TRP ILE THR ASP ALA THR CYS THR SER GLY ILE GLY SEQRES 21 A 595 LYS PHE LEU THR ALA PRO ASN PRO GLU LEU ALA SER LEU SEQRES 22 A 595 ILE GLU GLN GLU CYS SER LYS THR SER TRP GLU ALA ILE SEQRES 23 A 595 LEU LYS ARG LEU TRP PRO LYS ALA LYS CYS ILE GLU SER SEQRES 24 A 595 ILE ILE THR GLY THR MET ALA GLN TYR ILE PRO LEU LEU SEQRES 25 A 595 GLU PHE TYR SER GLY GLY LEU PRO LEU THR SER SER PHE SEQRES 26 A 595 TYR GLY SER SER GLU CYS PHE MET GLY VAL ASN PHE ASN SEQRES 27 A 595 PRO LEU CYS LYS PRO SER ASP VAL SER TYR THR ILE ILE SEQRES 28 A 595 PRO CYS MET GLY TYR PHE GLU PHE LEU GLU VAL GLU LYS SEQRES 29 A 595 ASP HIS GLN GLU ALA GLY HIS ASP PRO THR GLU LYS PRO SEQRES 30 A 595 VAL VAL VAL ASP LEU VAL ASP VAL LYS ILE GLY HIS ASP SEQRES 31 A 595 TYR GLU PRO VAL VAL THR THR PHE SER GLY LEU TYR ARG SEQRES 32 A 595 TYR ARG VAL GLY ASP VAL LEU ARG ALA THR GLY PHE TYR SEQRES 33 A 595 ASN ASN ALA PRO HIS PHE CYS PHE VAL GLY ARG GLN LYS SEQRES 34 A 595 VAL VAL LEU SER ILE ASP MET ASP LYS THR TYR GLU ASP SEQRES 35 A 595 ASP LEU LEU LYS ALA VAL THR ASN ALA LYS LEU LEU LEU SEQRES 36 A 595 GLU PRO HIS ASP LEU MET LEU MET ASP PHE THR SER ARG SEQRES 37 A 595 VAL ASP SER SER SER PHE PRO GLY HIS TYR VAL ILE TYR SEQRES 38 A 595 TRP GLU LEU GLY SER LYS VAL LYS ASP ALA LYS PHE GLU SEQRES 39 A 595 PRO ASN ARG ASP VAL MET GLU GLU CYS CYS PHE THR VAL SEQRES 40 A 595 GLU GLU SER LEU ASP ALA VAL TYR ARG LYS GLY ARG LYS SEQRES 41 A 595 ASN ASP LYS ASN ILE GLY PRO LEU GLU ILE LYS VAL VAL SEQRES 42 A 595 LYS PRO GLY ALA PHE ASP GLU LEU MET ASN PHE PHE LEU SEQRES 43 A 595 SER ARG GLY SER SER VAL SER GLN TYR LYS THR PRO ARG SEQRES 44 A 595 SER VAL THR ASN GLU GLU ALA LEU LYS ILE LEU GLU ALA SEQRES 45 A 595 ASN VAL ILE SER GLU PHE LEU SER ARG LYS ILE PRO SER SEQRES 46 A 595 TRP GLU LEU HIS GLU LEU HIS SER GLY ARG HET PO4 A 601 5 HET CFA A 602 13 HET CFA A 603 13 HETNAM PO4 PHOSPHATE ION HETNAM CFA (2,4-DICHLOROPHENOXY)ACETIC ACID HETSYN CFA 2,4-DICHLOROPHENOXYACETIC ACID FORMUL 2 PO4 O4 P 3- FORMUL 3 CFA 2(C8 H6 CL2 O3) FORMUL 5 HOH *288(H2 O) HELIX 1 AA1 ASN A 9 ASN A 23 1 15 HELIX 2 AA2 ASN A 23 ASN A 39 1 17 HELIX 3 AA3 THR A 42 ASN A 50 1 9 HELIX 4 AA4 ASP A 54 VAL A 62 1 9 HELIX 5 AA5 THR A 66 ASN A 79 1 14 HELIX 6 AA6 PRO A 82 ILE A 86 5 5 HELIX 7 AA7 THR A 112 ILE A 133 1 22 HELIX 8 AA8 GLY A 135 GLY A 139 5 5 HELIX 9 AA9 THR A 161 THR A 173 1 13 HELIX 10 AB1 ASP A 193 GLU A 208 1 16 HELIX 11 AB2 ALA A 220 GLY A 244 1 25 HELIX 12 AB3 ASP A 252 ILE A 259 1 8 HELIX 13 AB4 GLY A 260 PHE A 262 5 3 HELIX 14 AB5 ASN A 267 SER A 279 1 13 HELIX 15 AB6 ALA A 285 TRP A 291 1 7 HELIX 16 AB7 THR A 302 GLN A 307 5 6 HELIX 17 AB8 TYR A 308 GLY A 317 1 10 HELIX 18 AB9 LYS A 342 VAL A 346 5 5 HELIX 19 AC1 VAL A 383 VAL A 385 5 3 HELIX 20 AC2 GLU A 441 LEU A 453 1 13 HELIX 21 AC3 LEU A 454 ASP A 459 5 6 HELIX 22 AC4 ASN A 496 LEU A 511 1 16 HELIX 23 AC5 ASP A 512 ASN A 521 1 10 HELIX 24 AC6 GLY A 536 ARG A 548 1 13 HELIX 25 AC7 ASN A 563 ALA A 572 1 10 SHEET 1 AA1 4 PRO A 105 THR A 111 0 SHEET 2 AA1 4 ILE A 91 THR A 100 -1 N LEU A 95 O ILE A 108 SHEET 3 AA1 4 MET A 158 ARG A 160 1 O MET A 158 N LEU A 94 SHEET 4 AA1 4 SER A 151 LYS A 152 -1 N SER A 151 O VAL A 159 SHEET 1 AA2 5 LEU A 181 VAL A 183 0 SHEET 2 AA2 5 LYS A 140 ILE A 143 1 N SER A 141 O GLN A 182 SHEET 3 AA2 5 VAL A 212 PHE A 219 1 O ALA A 213 N LYS A 140 SHEET 4 AA2 5 ILE A 297 ILE A 300 1 O GLU A 298 N LEU A 215 SHEET 5 AA2 5 LEU A 321 THR A 322 1 O THR A 322 N ILE A 297 SHEET 1 AA3 8 PHE A 325 GLY A 327 0 SHEET 2 AA3 8 PHE A 332 VAL A 335 -1 O GLY A 334 N TYR A 326 SHEET 3 AA3 8 TYR A 348 ILE A 350 -1 O THR A 349 N VAL A 335 SHEET 4 AA3 8 ALA A 419 ARG A 427 -1 O PHE A 422 N TYR A 348 SHEET 5 AA3 8 ASP A 408 TYR A 416 -1 N TYR A 416 O ALA A 419 SHEET 6 AA3 8 ASP A 390 THR A 396 -1 N TYR A 391 O LEU A 410 SHEET 7 AA3 8 TYR A 356 GLU A 361 -1 N GLU A 358 O VAL A 394 SHEET 8 AA3 8 VAL A 379 ASP A 381 -1 O VAL A 380 N PHE A 359 SHEET 1 AA4 7 PHE A 325 GLY A 327 0 SHEET 2 AA4 7 PHE A 332 VAL A 335 -1 O GLY A 334 N TYR A 326 SHEET 3 AA4 7 TYR A 348 ILE A 350 -1 O THR A 349 N VAL A 335 SHEET 4 AA4 7 ALA A 419 ARG A 427 -1 O PHE A 422 N TYR A 348 SHEET 5 AA4 7 ASP A 408 TYR A 416 -1 N TYR A 416 O ALA A 419 SHEET 6 AA4 7 ASP A 390 THR A 396 -1 N TYR A 391 O LEU A 410 SHEET 7 AA4 7 TYR A 404 ARG A 405 -1 O TYR A 404 N VAL A 395 SHEET 1 AA5 2 VAL A 430 LEU A 432 0 SHEET 2 AA5 2 THR A 439 TYR A 440 -1 O THR A 439 N LEU A 432 SHEET 1 AA6 4 MET A 461 ASP A 470 0 SHEET 2 AA6 4 HIS A 477 GLY A 485 -1 O GLU A 483 N MET A 463 SHEET 3 AA6 4 GLU A 529 VAL A 533 1 O GLU A 529 N ILE A 480 SHEET 4 AA6 4 VAL A 574 LEU A 579 -1 O ILE A 575 N VAL A 532 SSBOND 1 CYS A 200 CYS A 255 1555 1555 2.03 CISPEP 1 SER A 101 GLY A 102 0 -12.32 CISPEP 2 GLY A 102 GLY A 103 0 -1.45 SITE 1 AC1 4 PHE A 314 MET A 461 LYS A 487 HOH A 830 SITE 1 AC2 9 ILE A 143 TYR A 145 ARG A 214 GLY A 216 SITE 2 AC2 9 ALA A 217 PRO A 218 GLU A 298 CFA A 603 SITE 3 AC2 9 HOH A 820 SITE 1 AC3 5 VAL A 163 PHE A 166 PHE A 325 PHE A 332 SITE 2 AC3 5 CFA A 602 CRYST1 153.798 154.789 73.424 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006502 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013620 0.00000