data_6E1U
# 
_entry.id   6E1U 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.379 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   6E1U         pdb_00006e1u 10.2210/pdb6e1u/pdb 
WWPDB D_1000235531 ?            ?                   
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.entry_id                        6E1U 
_pdbx_database_status.recvd_initial_deposition_date   2018-07-10 
_pdbx_database_status.SG_entry                        N 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
_audit_author.identifier_ORCID 
'Numata, T.'          1 ? 
'Connelly, C.M.'      2 ? 
'Schneekloth, J.S.'   3 ? 
;Ferre-D'Amare, A.R.
;
4 ? 
# 
_citation.abstract                  ? 
_citation.abstract_id_CAS           ? 
_citation.book_id_ISBN              ? 
_citation.book_publisher            ? 
_citation.book_publisher_city       ? 
_citation.book_title                ? 
_citation.coordinate_linkage        ? 
_citation.country                   UK 
_citation.database_id_Medline       ? 
_citation.details                   ? 
_citation.id                        primary 
_citation.journal_abbrev            'Nat Commun' 
_citation.journal_id_ASTM           ? 
_citation.journal_id_CSD            ? 
_citation.journal_id_ISSN           2041-1723 
_citation.journal_full              ? 
_citation.journal_issue             ? 
_citation.journal_volume            10 
_citation.language                  ? 
_citation.page_first                1501 
_citation.page_last                 1501 
_citation.title                     
'Synthetic ligands for PreQ1riboswitches provide structural and mechanistic insights into targeting RNA tertiary structure.' 
_citation.year                      2019 
_citation.database_id_CSD           ? 
_citation.pdbx_database_id_DOI      10.1038/s41467-019-09493-3 
_citation.pdbx_database_id_PubMed   30940810 
_citation.unpublished_flag          ? 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Connelly, C.M.'        1 ? 
primary 'Numata, T.'            2 ? 
primary 'Boer, R.E.'            3 ? 
primary 'Moon, M.H.'            4 ? 
primary 'Sinniah, R.S.'         5 ? 
primary 'Barchi, J.J.'          6 ? 
primary 
;Ferre-D'Amare, A.R.
;
7 ? 
primary 'Schneekloth Jr., J.S.' 8 ? 
# 
_cell.angle_alpha                  90.000 
_cell.angle_alpha_esd              ? 
_cell.angle_beta                   90.000 
_cell.angle_beta_esd               ? 
_cell.angle_gamma                  120.000 
_cell.angle_gamma_esd              ? 
_cell.entry_id                     6E1U 
_cell.details                      ? 
_cell.formula_units_Z              ? 
_cell.length_a                     115.361 
_cell.length_a_esd                 ? 
_cell.length_b                     115.361 
_cell.length_b_esd                 ? 
_cell.length_c                     58.463 
_cell.length_c_esd                 ? 
_cell.volume                       ? 
_cell.volume_esd                   ? 
_cell.Z_PDB                        12 
_cell.reciprocal_angle_alpha       ? 
_cell.reciprocal_angle_beta        ? 
_cell.reciprocal_angle_gamma       ? 
_cell.reciprocal_angle_alpha_esd   ? 
_cell.reciprocal_angle_beta_esd    ? 
_cell.reciprocal_angle_gamma_esd   ? 
_cell.reciprocal_length_a          ? 
_cell.reciprocal_length_b          ? 
_cell.reciprocal_length_c          ? 
_cell.reciprocal_length_a_esd      ? 
_cell.reciprocal_length_b_esd      ? 
_cell.reciprocal_length_c_esd      ? 
_cell.pdbx_unique_axis             ? 
# 
_symmetry.entry_id                         6E1U 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                182 
_symmetry.space_group_name_Hall            ? 
_symmetry.space_group_name_H-M             'P 63 2 2' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 'RNA (33-MER)'                                              10333.194 1  ? ? ? ? 
2 non-polymer syn '2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amine' 255.312   1  ? ? ? ? 
3 non-polymer syn 'MAGNESIUM ION'                                             24.305    1  ? ? ? ? 
4 water       nat water                                                       18.015    50 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       'CUGGGUCGCAGU(N)(N)CCCCAGUUAACAAAACAAG' 
_entity_poly.pdbx_seq_one_letter_code_can   CUGGGUCGCAGUNNCCCCAGUUAACAAAACAAG 
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  C n 
1 2  U n 
1 3  G n 
1 4  G n 
1 5  G n 
1 6  U n 
1 7  C n 
1 8  G n 
1 9  C n 
1 10 A n 
1 11 G n 
1 12 U n 
1 13 N n 
1 14 N n 
1 15 C n 
1 16 C n 
1 17 C n 
1 18 C n 
1 19 A n 
1 20 G n 
1 21 U n 
1 22 U n 
1 23 A n 
1 24 A n 
1 25 C n 
1 26 A n 
1 27 A n 
1 28 A n 
1 29 A n 
1 30 C n 
1 31 A n 
1 32 A n 
1 33 G n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       1 
_pdbx_entity_src_syn.pdbx_end_seq_num       33 
_pdbx_entity_src_syn.organism_scientific    'Caldanaerobacter subterraneus subsp. tengcongensis' 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       119072 
_pdbx_entity_src_syn.details                ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    6E1U 
_struct_ref.pdbx_db_accession          6E1U 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           1 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              6E1U 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 33 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             6E1U 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  33 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       33 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A   'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE"                                ?                                   
'C10 H14 N5 O7 P' 347.221 
C   'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"                                 ?                                   
'C9 H14 N3 O8 P'  323.197 
G   'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE"                                ?                                   
'C10 H14 N5 O8 P' 363.221 
HMJ non-polymer   . '2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amine' ?                                   'C16 H17 N O2' 
255.312 
HOH non-polymer   . WATER                                                       ?                                   'H2 O' 18.015  
MG  non-polymer   . 'MAGNESIUM ION'                                             ?                                   'Mg 2' 24.305  
N   'RNA linking' . 
;ANY 5'-MONOPHOSPHATE NUCLEOTIDE
;
"1-DEOXY-RIBOFURANOSE-5'-PHOSPHATE" 'C5 H11 O7 P'     214.110 
U   'RNA linking' y "URIDINE-5'-MONOPHOSPHATE"                                  ?                                   
'C9 H13 N2 O9 P'  324.181 
# 
_exptl.absorpt_coefficient_mu     ? 
_exptl.absorpt_correction_T_max   ? 
_exptl.absorpt_correction_T_min   ? 
_exptl.absorpt_correction_type    ? 
_exptl.absorpt_process_details    ? 
_exptl.entry_id                   6E1U 
_exptl.crystals_number            1 
_exptl.details                    ? 
_exptl.method                     'X-RAY DIFFRACTION' 
_exptl.method_details             ? 
# 
_exptl_crystal.colour                      ? 
_exptl_crystal.density_diffrn              ? 
_exptl_crystal.density_Matthews            5.16 
_exptl_crystal.density_method              ? 
_exptl_crystal.density_percent_sol         76.2 
_exptl_crystal.description                 ? 
_exptl_crystal.F_000                       ? 
_exptl_crystal.id                          1 
_exptl_crystal.preparation                 ? 
_exptl_crystal.size_max                    ? 
_exptl_crystal.size_mid                    ? 
_exptl_crystal.size_min                    ? 
_exptl_crystal.size_rad                    ? 
_exptl_crystal.colour_lustre               ? 
_exptl_crystal.colour_modifier             ? 
_exptl_crystal.colour_primary              ? 
_exptl_crystal.density_meas                ? 
_exptl_crystal.density_meas_esd            ? 
_exptl_crystal.density_meas_gt             ? 
_exptl_crystal.density_meas_lt             ? 
_exptl_crystal.density_meas_temp           ? 
_exptl_crystal.density_meas_temp_esd       ? 
_exptl_crystal.density_meas_temp_gt        ? 
_exptl_crystal.density_meas_temp_lt        ? 
_exptl_crystal.pdbx_crystal_image_url      ? 
_exptl_crystal.pdbx_crystal_image_format   ? 
_exptl_crystal.pdbx_mosaicity              ? 
_exptl_crystal.pdbx_mosaicity_esd          ? 
# 
_exptl_crystal_grow.apparatus       ? 
_exptl_crystal_grow.atmosphere      ? 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.details         ? 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.method_ref      ? 
_exptl_crystal_grow.pH              5.6 
_exptl_crystal_grow.pressure        ? 
_exptl_crystal_grow.pressure_esd    ? 
_exptl_crystal_grow.seeding         ? 
_exptl_crystal_grow.seeding_ref     ? 
_exptl_crystal_grow.temp            294 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.temp_esd        ? 
_exptl_crystal_grow.time            ? 
_exptl_crystal_grow.pdbx_details    '0.2 M potassium sodium tartrate, 0.1 M sodium citrate (pH 5.6), 2.8 M ammonium sulfate' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
_diffrn.ambient_environment    ? 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.ambient_temp_esd       ? 
_diffrn.crystal_id             1 
_diffrn.crystal_support        ? 
_diffrn.crystal_treatment      ? 
_diffrn.details                ? 
_diffrn.id                     1 
_diffrn.ambient_pressure       ? 
_diffrn.ambient_pressure_esd   ? 
_diffrn.ambient_pressure_gt    ? 
_diffrn.ambient_pressure_lt    ? 
_diffrn.ambient_temp_gt        ? 
_diffrn.ambient_temp_lt        ? 
# 
_diffrn_detector.details                      ? 
_diffrn_detector.detector                     PIXEL 
_diffrn_detector.diffrn_id                    1 
_diffrn_detector.type                         'DECTRIS PILATUS3 6M' 
_diffrn_detector.area_resol_mean              ? 
_diffrn_detector.dtime                        ? 
_diffrn_detector.pdbx_frames_total            ? 
_diffrn_detector.pdbx_collection_time_total   ? 
_diffrn_detector.pdbx_collection_date         2017-11-07 
# 
_diffrn_radiation.collimation                      ? 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.filter_edge                      ? 
_diffrn_radiation.inhomogeneity                    ? 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.polarisn_norm                    ? 
_diffrn_radiation.polarisn_ratio                   ? 
_diffrn_radiation.probe                            ? 
_diffrn_radiation.type                             ? 
_diffrn_radiation.xray_symbol                      ? 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.pdbx_wavelength_list             ? 
_diffrn_radiation.pdbx_wavelength                  ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_analyzer                    ? 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.0 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.current                     ? 
_diffrn_source.details                     ? 
_diffrn_source.diffrn_id                   1 
_diffrn_source.power                       ? 
_diffrn_source.size                        ? 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.target                      ? 
_diffrn_source.type                        'ALS BEAMLINE 5.0.2' 
_diffrn_source.voltage                     ? 
_diffrn_source.take-off_angle              ? 
_diffrn_source.pdbx_wavelength_list        1.0 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_synchrotron_beamline   5.0.2 
_diffrn_source.pdbx_synchrotron_site       ALS 
# 
_reflns.B_iso_Wilson_estimate            42.590 
_reflns.entry_id                         6E1U 
_reflns.data_reduction_details           ? 
_reflns.data_reduction_method            ? 
_reflns.d_resolution_high                1.940 
_reflns.d_resolution_low                 99.910 
_reflns.details                          ? 
_reflns.limit_h_max                      ? 
_reflns.limit_h_min                      ? 
_reflns.limit_k_max                      ? 
_reflns.limit_k_min                      ? 
_reflns.limit_l_max                      ? 
_reflns.limit_l_min                      ? 
_reflns.number_all                       ? 
_reflns.number_obs                       17502 
_reflns.observed_criterion               ? 
_reflns.observed_criterion_F_max         ? 
_reflns.observed_criterion_F_min         ? 
_reflns.observed_criterion_I_max         ? 
_reflns.observed_criterion_I_min         ? 
_reflns.observed_criterion_sigma_F       ? 
_reflns.observed_criterion_sigma_I       ? 
_reflns.percent_possible_obs             100.000 
_reflns.R_free_details                   ? 
_reflns.Rmerge_F_all                     ? 
_reflns.Rmerge_F_obs                     ? 
_reflns.Friedel_coverage                 ? 
_reflns.number_gt                        ? 
_reflns.threshold_expression             ? 
_reflns.pdbx_redundancy                  25.600 
_reflns.pdbx_Rmerge_I_obs                0.095 
_reflns.pdbx_Rmerge_I_all                ? 
_reflns.pdbx_Rsym_value                  ? 
_reflns.pdbx_netI_over_av_sigmaI         ? 
_reflns.pdbx_netI_over_sigmaI            15.000 
_reflns.pdbx_res_netI_over_av_sigmaI_2   ? 
_reflns.pdbx_res_netI_over_sigmaI_2      ? 
_reflns.pdbx_chi_squared                 ? 
_reflns.pdbx_scaling_rejects             449 
_reflns.pdbx_d_res_high_opt              ? 
_reflns.pdbx_d_res_low_opt               ? 
_reflns.pdbx_d_res_opt_method            ? 
_reflns.phase_calculation_details        ? 
_reflns.pdbx_Rrim_I_all                  0.097 
_reflns.pdbx_Rpim_I_all                  0.020 
_reflns.pdbx_d_opt                       ? 
_reflns.pdbx_number_measured_all         448241 
_reflns.pdbx_diffrn_id                   1 
_reflns.pdbx_ordinal                     1 
_reflns.pdbx_CC_half                     0.999 
_reflns.pdbx_R_split                     ? 
# 
loop_
_reflns_shell.d_res_high 
_reflns_shell.d_res_low 
_reflns_shell.meanI_over_sigI_all 
_reflns_shell.meanI_over_sigI_obs 
_reflns_shell.number_measured_all 
_reflns_shell.number_measured_obs 
_reflns_shell.number_possible 
_reflns_shell.number_unique_all 
_reflns_shell.number_unique_obs 
_reflns_shell.percent_possible_all 
_reflns_shell.percent_possible_obs 
_reflns_shell.Rmerge_F_all 
_reflns_shell.Rmerge_F_obs 
_reflns_shell.Rmerge_I_all 
_reflns_shell.Rmerge_I_obs 
_reflns_shell.meanI_over_sigI_gt 
_reflns_shell.meanI_over_uI_all 
_reflns_shell.meanI_over_uI_gt 
_reflns_shell.number_measured_gt 
_reflns_shell.number_unique_gt 
_reflns_shell.percent_possible_gt 
_reflns_shell.Rmerge_F_gt 
_reflns_shell.Rmerge_I_gt 
_reflns_shell.pdbx_redundancy 
_reflns_shell.pdbx_Rsym_value 
_reflns_shell.pdbx_chi_squared 
_reflns_shell.pdbx_netI_over_sigmaI_all 
_reflns_shell.pdbx_netI_over_sigmaI_obs 
_reflns_shell.pdbx_Rrim_I_all 
_reflns_shell.pdbx_Rpim_I_all 
_reflns_shell.pdbx_rejects 
_reflns_shell.pdbx_ordinal 
_reflns_shell.pdbx_diffrn_id 
_reflns_shell.pdbx_CC_half 
_reflns_shell.pdbx_R_split 
1.940 1.990  ? ? ? ? ? ? 1262 100.000 ? ? ? ? 4.303 ? ? ? ? ? ? ? ? 26.800 ? ? ? ? 4.385 0.837 ? 1 1 0.698 ? 
8.680 99.910 ? ? ? ? ? ? 252  99.800  ? ? ? ? 0.058 ? ? ? ? ? ? ? ? 21.300 ? ? ? ? 0.060 0.015 ? 2 1 0.998 ? 
# 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.B_iso_max                                160.010 
_refine.B_iso_mean                               58.8384 
_refine.B_iso_min                                29.320 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.details                                  ? 
_refine.diff_density_max                         ? 
_refine.diff_density_max_esd                     ? 
_refine.diff_density_min                         ? 
_refine.diff_density_min_esd                     ? 
_refine.diff_density_rms                         ? 
_refine.diff_density_rms_esd                     ? 
_refine.entry_id                                 6E1U 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.ls_abs_structure_details                 ? 
_refine.ls_abs_structure_Flack                   ? 
_refine.ls_abs_structure_Flack_esd               ? 
_refine.ls_abs_structure_Rogers                  ? 
_refine.ls_abs_structure_Rogers_esd              ? 
_refine.ls_d_res_high                            1.9400 
_refine.ls_d_res_low                             57.6810 
_refine.ls_extinction_coef                       ? 
_refine.ls_extinction_coef_esd                   ? 
_refine.ls_extinction_expression                 ? 
_refine.ls_extinction_method                     ? 
_refine.ls_goodness_of_fit_all                   ? 
_refine.ls_goodness_of_fit_all_esd               ? 
_refine.ls_goodness_of_fit_obs                   ? 
_refine.ls_goodness_of_fit_obs_esd               ? 
_refine.ls_hydrogen_treatment                    ? 
_refine.ls_matrix_type                           ? 
_refine.ls_number_constraints                    ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_reflns_all                     ? 
_refine.ls_number_reflns_obs                     17448 
_refine.ls_number_reflns_R_free                  869 
_refine.ls_number_reflns_R_work                  ? 
_refine.ls_number_restraints                     ? 
_refine.ls_percent_reflns_obs                    99.7800 
_refine.ls_percent_reflns_R_free                 4.9800 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_obs                          0.1903 
_refine.ls_R_factor_R_free                       0.2030 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_R_factor_R_work                       0.1896 
_refine.ls_R_Fsqd_factor_obs                     ? 
_refine.ls_R_I_factor_obs                        ? 
_refine.ls_redundancy_reflns_all                 ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.ls_restrained_S_all                      ? 
_refine.ls_restrained_S_obs                      ? 
_refine.ls_shift_over_esd_max                    ? 
_refine.ls_shift_over_esd_mean                   ? 
_refine.ls_structure_factor_coef                 ? 
_refine.ls_weighting_details                     ? 
_refine.ls_weighting_scheme                      ? 
_refine.ls_wR_factor_all                         ? 
_refine.ls_wR_factor_obs                         ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.occupancy_max                            ? 
_refine.occupancy_min                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_bsol                 ? 
_refine.solvent_model_param_ksol                 ? 
_refine.ls_R_factor_gt                           ? 
_refine.ls_goodness_of_fit_gt                    ? 
_refine.ls_goodness_of_fit_ref                   ? 
_refine.ls_shift_over_su_max                     ? 
_refine.ls_shift_over_su_max_lt                  ? 
_refine.ls_shift_over_su_mean                    ? 
_refine.ls_shift_over_su_mean_lt                 ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          1.350 
_refine.pdbx_ls_sigma_Fsqd                       ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_starting_model                      3Q50 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.pdbx_solvent_vdw_probe_radii             1.1100 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             0.9000 
_refine.pdbx_real_space_R                        ? 
_refine.pdbx_density_correlation                 ? 
_refine.pdbx_pd_number_of_powder_patterns        ? 
_refine.pdbx_pd_number_of_points                 ? 
_refine.pdbx_pd_meas_number_of_points            ? 
_refine.pdbx_pd_proc_ls_prof_R_factor            ? 
_refine.pdbx_pd_proc_ls_prof_wR_factor           ? 
_refine.pdbx_pd_Marquardt_correlation_coeff      ? 
_refine.pdbx_pd_Fsqrd_R_factor                   ? 
_refine.pdbx_pd_ls_matrix_band_width             ? 
_refine.pdbx_overall_phase_error                 27.1600 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_diffrn_id                           1 
_refine.overall_SU_B                             ? 
_refine.overall_SU_ML                            0.2200 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_average_fsc_overall                 ? 
_refine.pdbx_average_fsc_work                    ? 
_refine.pdbx_average_fsc_free                    ? 
# 
_refine_hist.cycle_id                         final 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.d_res_high                       1.9400 
_refine_hist.d_res_low                        57.6810 
_refine_hist.pdbx_number_atoms_ligand         20 
_refine_hist.number_atoms_solvent             50 
_refine_hist.number_atoms_total               744 
_refine_hist.pdbx_number_residues_total       33 
_refine_hist.pdbx_B_iso_mean_ligand           43.17 
_refine_hist.pdbx_B_iso_mean_solvent          56.14 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   674 
# 
loop_
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.criterion 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.number 
_refine_ls_restr.rejects 
_refine_ls_restr.type 
_refine_ls_restr.weight 
_refine_ls_restr.pdbx_restraint_function 
'X-RAY DIFFRACTION' ? 0.004  ? 773  ? f_bond_d           ? ? 
'X-RAY DIFFRACTION' ? 1.059  ? 1197 ? f_angle_d          ? ? 
'X-RAY DIFFRACTION' ? 0.044  ? 157  ? f_chiral_restr     ? ? 
'X-RAY DIFFRACTION' ? 0.011  ? 32   ? f_plane_restr      ? ? 
'X-RAY DIFFRACTION' ? 16.378 ? 380  ? f_dihedral_angle_d ? ? 
# 
loop_
_refine_ls_shell.pdbx_refine_id 
_refine_ls_shell.d_res_high 
_refine_ls_shell.d_res_low 
_refine_ls_shell.number_reflns_all 
_refine_ls_shell.number_reflns_obs 
_refine_ls_shell.number_reflns_R_free 
_refine_ls_shell.number_reflns_R_work 
_refine_ls_shell.percent_reflns_obs 
_refine_ls_shell.percent_reflns_R_free 
_refine_ls_shell.R_factor_all 
_refine_ls_shell.R_factor_obs 
_refine_ls_shell.R_factor_R_free 
_refine_ls_shell.R_factor_R_free_error 
_refine_ls_shell.R_factor_R_work 
_refine_ls_shell.redundancy_reflns_all 
_refine_ls_shell.redundancy_reflns_obs 
_refine_ls_shell.wR_factor_all 
_refine_ls_shell.wR_factor_obs 
_refine_ls_shell.wR_factor_R_free 
_refine_ls_shell.wR_factor_R_work 
_refine_ls_shell.pdbx_total_number_of_bins_used 
_refine_ls_shell.pdbx_phase_error 
_refine_ls_shell.pdbx_fsc_work 
_refine_ls_shell.pdbx_fsc_free 
'X-RAY DIFFRACTION' 1.9400 2.0616  2840 . 145 2695 100.0000 . . . 0.4046 0.0000 0.3769 . . . . . . 6 . . . 
'X-RAY DIFFRACTION' 2.0616 2.2208  2851 . 121 2730 100.0000 . . . 0.3300 0.0000 0.3334 . . . . . . 6 . . . 
'X-RAY DIFFRACTION' 2.2208 2.4443  2861 . 158 2703 100.0000 . . . 0.2658 0.0000 0.2782 . . . . . . 6 . . . 
'X-RAY DIFFRACTION' 2.4443 2.7979  2872 . 147 2725 100.0000 . . . 0.3482 0.0000 0.2855 . . . . . . 6 . . . 
'X-RAY DIFFRACTION' 2.7979 3.5251  2920 . 143 2777 100.0000 . . . 0.1889 0.0000 0.1805 . . . . . . 6 . . . 
'X-RAY DIFFRACTION' 3.5251 57.7060 3104 . 155 2949 100.0000 . . . 0.1447 0.0000 0.1335 . . . . . . 6 . . . 
# 
_struct.entry_id                     6E1U 
_struct.title                        
;Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 2: 2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amine
;
_struct.pdbx_model_details           ? 
_struct.pdbx_formula_weight          ? 
_struct.pdbx_formula_weight_method   ? 
_struct.pdbx_model_type_details      ? 
_struct.pdbx_CASP_flag               N 
# 
_struct_keywords.entry_id        6E1U 
_struct_keywords.text            'PreQ1 riboswitch, Synthetic compound, Complex, RNA' 
_struct_keywords.pdbx_keywords   RNA 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 3 ? 
D N N 4 ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A U 12 "O3'" ? ? ? 1_555 A N  13 P  ? ? A U 12 A N  13  1_555 ? ? ? ? ? ? ?             1.610 ? ? 
covale2  covale both ? A N 14 "O3'" ? ? ? 1_555 A C  15 P  ? ? A N 14 A C  15  1_555 ? ? ? ? ? ? ?             1.614 ? ? 
metalc1  metalc ?    ? A G 3  OP2   ? ? ? 1_555 C MG .  MG ? ? A G 3  A MG 102 1_555 ? ? ? ? ? ? ?             2.460 ? ? 
hydrog1  hydrog ?    ? A C 1  N3    ? ? ? 1_555 A G  20 N1 ? ? A C 1  A G  20  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog2  hydrog ?    ? A C 1  N4    ? ? ? 1_555 A G  20 O6 ? ? A C 1  A G  20  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog3  hydrog ?    ? A C 1  O2    ? ? ? 1_555 A G  20 N2 ? ? A C 1  A G  20  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog4  hydrog ?    ? A U 2  N3    ? ? ? 1_555 A A  19 N1 ? ? A U 2  A A  19  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog5  hydrog ?    ? A U 2  O4    ? ? ? 1_555 A A  19 N6 ? ? A U 2  A A  19  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog6  hydrog ?    ? A G 3  N1    ? ? ? 1_555 A C  18 N3 ? ? A G 3  A C  18  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog7  hydrog ?    ? A G 3  N2    ? ? ? 1_555 A C  18 O2 ? ? A G 3  A C  18  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog8  hydrog ?    ? A G 3  O6    ? ? ? 1_555 A C  18 N4 ? ? A G 3  A C  18  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog9  hydrog ?    ? A G 4  N1    ? ? ? 1_555 A C  17 N3 ? ? A G 4  A C  17  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog10 hydrog ?    ? A G 4  N2    ? ? ? 1_555 A C  17 O2 ? ? A G 4  A C  17  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog11 hydrog ?    ? A G 4  O6    ? ? ? 1_555 A C  17 N4 ? ? A G 4  A C  17  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog12 hydrog ?    ? A G 5  N1    ? ? ? 1_555 A C  16 N3 ? ? A G 5  A C  16  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog13 hydrog ?    ? A G 5  N2    ? ? ? 1_555 A C  16 O2 ? ? A G 5  A C  16  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog14 hydrog ?    ? A G 5  O6    ? ? ? 1_555 A C  16 N4 ? ? A G 5  A C  16  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog15 hydrog ?    ? A G 5  N2    ? ? ? 1_555 A A  27 N1 ? ? A G 5  A A  27  1_555 ? ? ? ? ? ? TYPE_10_PAIR  ?     ? ? 
hydrog16 hydrog ?    ? A G 5  N3    ? ? ? 1_555 A A  27 N6 ? ? A G 5  A A  27  1_555 ? ? ? ? ? ? TYPE_10_PAIR  ?     ? ? 
hydrog17 hydrog ?    ? A U 6  N3    ? ? ? 1_555 A A  28 N7 ? ? A U 6  A A  28  1_555 ? ? ? ? ? ? HOOGSTEEN     ?     ? ? 
hydrog18 hydrog ?    ? A U 6  O4    ? ? ? 1_555 A A  28 N6 ? ? A U 6  A A  28  1_555 ? ? ? ? ? ? HOOGSTEEN     ?     ? ? 
hydrog19 hydrog ?    ? A C 7  N4    ? ? ? 1_555 A G  11 N7 ? ? A C 7  A G  11  1_555 ? ? ? ? ? ? 'C-G PAIR'    ?     ? ? 
hydrog20 hydrog ?    ? A C 7  O2    ? ? ? 1_555 A A  29 N6 ? ? A C 7  A A  29  1_555 ? ? ? ? ? ? 'C-A MISPAIR' ?     ? ? 
hydrog21 hydrog ?    ? A C 7  O2    ? ? ? 1_555 A C  30 N4 ? ? A C 7  A C  30  1_555 ? ? ? ? ? ? 'C-C MISPAIR' ?     ? ? 
hydrog22 hydrog ?    ? A G 8  N2    ? ? ? 1_555 A A  31 N1 ? ? A G 8  A A  31  1_555 ? ? ? ? ? ? TYPE_10_PAIR  ?     ? ? 
hydrog23 hydrog ?    ? A G 8  N3    ? ? ? 1_555 A A  31 N6 ? ? A G 8  A A  31  1_555 ? ? ? ? ? ? TYPE_10_PAIR  ?     ? ? 
hydrog24 hydrog ?    ? A C 9  N3    ? ? ? 1_555 A G  33 N1 ? ? A C 9  A G  33  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog25 hydrog ?    ? A C 9  N4    ? ? ? 1_555 A G  33 O6 ? ? A C 9  A G  33  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog26 hydrog ?    ? A C 9  O2    ? ? ? 1_555 A G  33 N2 ? ? A C 9  A G  33  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog27 hydrog ?    ? A A 10 N3    ? ? ? 1_555 A A  32 N6 ? ? A A 10 A A  32  1_555 ? ? ? ? ? ? 'A-A MISPAIR' ?     ? ? 
hydrog28 hydrog ?    ? A G 11 N1    ? ? ? 1_555 A C  30 N3 ? ? A G 11 A C  30  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog29 hydrog ?    ? A G 11 N2    ? ? ? 1_555 A C  30 O2 ? ? A G 11 A C  30  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog30 hydrog ?    ? A G 11 O6    ? ? ? 1_555 A C  30 N4 ? ? A G 11 A C  30  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog31 hydrog ?    ? A C 16 O2    ? ? ? 1_555 A A  28 N6 ? ? A C 16 A A  28  1_555 ? ? ? ? ? ? 'C-A MISPAIR' ?     ? ? 
hydrog32 hydrog ?    ? A C 17 O2    ? ? ? 1_555 A A  26 N6 ? ? A C 17 A A  26  1_555 ? ? ? ? ? ? 'C-A MISPAIR' ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
metalc ? ? 
hydrog ? ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A HMJ 101 ? 7 'binding site for residue HMJ A 101' 
AC2 Software A MG  102 ? 2 'binding site for residue MG A 102'  
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1 AC1 7 G A 5  ? G A 5  . ? 1_555 ? 
2 AC1 7 U A 6  ? U A 6  . ? 1_555 ? 
3 AC1 7 C A 7  ? C A 7  . ? 1_555 ? 
4 AC1 7 G A 11 ? G A 11 . ? 1_555 ? 
5 AC1 7 C A 15 ? C A 15 . ? 1_555 ? 
6 AC1 7 C A 16 ? C A 16 . ? 1_555 ? 
7 AC1 7 A A 29 ? A A 29 . ? 1_555 ? 
8 AC2 2 G A 3  ? G A 3  . ? 1_555 ? 
9 AC2 2 G A 4  ? G A 4  . ? 1_555 ? 
# 
_atom_sites.entry_id                    6E1U 
_atom_sites.fract_transf_matrix[1][1]   0.008668 
_atom_sites.fract_transf_matrix[1][2]   0.005005 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.010009 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.017105 
_atom_sites.fract_transf_vector[1]      0.000000 
_atom_sites.fract_transf_vector[2]      0.000000 
_atom_sites.fract_transf_vector[3]      0.000000 
# 
loop_
_atom_type.symbol 
C  
MG 
N  
O  
P  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  C 1  1  1  C C A . n 
A 1 2  U 2  2  2  U U A . n 
A 1 3  G 3  3  3  G G A . n 
A 1 4  G 4  4  4  G G A . n 
A 1 5  G 5  5  5  G G A . n 
A 1 6  U 6  6  6  U U A . n 
A 1 7  C 7  7  7  C C A . n 
A 1 8  G 8  8  8  G G A . n 
A 1 9  C 9  9  9  C C A . n 
A 1 10 A 10 10 10 A A A . n 
A 1 11 G 11 11 11 G G A . n 
A 1 12 U 12 12 12 U U A . n 
A 1 13 N 13 13 13 N N A . n 
A 1 14 N 14 14 14 N N A . n 
A 1 15 C 15 15 15 C C A . n 
A 1 16 C 16 16 16 C C A . n 
A 1 17 C 17 17 17 C C A . n 
A 1 18 C 18 18 18 C C A . n 
A 1 19 A 19 19 19 A A A . n 
A 1 20 G 20 20 20 G G A . n 
A 1 21 U 21 21 21 U U A . n 
A 1 22 U 22 22 22 U U A . n 
A 1 23 A 23 23 23 A A A . n 
A 1 24 A 24 24 24 A A A . n 
A 1 25 C 25 25 25 C C A . n 
A 1 26 A 26 26 26 A A A . n 
A 1 27 A 27 27 27 A A A . n 
A 1 28 A 28 28 28 A A A . n 
A 1 29 A 29 29 29 A A A . n 
A 1 30 C 30 30 30 C C A . n 
A 1 31 A 31 31 31 A A A . n 
A 1 32 A 32 32 32 A A A . n 
A 1 33 G 33 33 33 G G A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 HMJ 1  101 1  HMJ LIG A . 
C 3 MG  1  102 1  MG  MG  A . 
D 4 HOH 1  201 50 HOH HOH A . 
D 4 HOH 2  202 2  HOH HOH A . 
D 4 HOH 3  203 12 HOH HOH A . 
D 4 HOH 4  204 1  HOH HOH A . 
D 4 HOH 5  205 36 HOH HOH A . 
D 4 HOH 6  206 3  HOH HOH A . 
D 4 HOH 7  207 7  HOH HOH A . 
D 4 HOH 8  208 46 HOH HOH A . 
D 4 HOH 9  209 13 HOH HOH A . 
D 4 HOH 10 210 35 HOH HOH A . 
D 4 HOH 11 211 41 HOH HOH A . 
D 4 HOH 12 212 17 HOH HOH A . 
D 4 HOH 13 213 18 HOH HOH A . 
D 4 HOH 14 214 38 HOH HOH A . 
D 4 HOH 15 215 6  HOH HOH A . 
D 4 HOH 16 216 42 HOH HOH A . 
D 4 HOH 17 217 20 HOH HOH A . 
D 4 HOH 18 218 4  HOH HOH A . 
D 4 HOH 19 219 15 HOH HOH A . 
D 4 HOH 20 220 40 HOH HOH A . 
D 4 HOH 21 221 22 HOH HOH A . 
D 4 HOH 22 222 21 HOH HOH A . 
D 4 HOH 23 223 8  HOH HOH A . 
D 4 HOH 24 224 10 HOH HOH A . 
D 4 HOH 25 225 31 HOH HOH A . 
D 4 HOH 26 226 45 HOH HOH A . 
D 4 HOH 27 227 14 HOH HOH A . 
D 4 HOH 28 228 34 HOH HOH A . 
D 4 HOH 29 229 27 HOH HOH A . 
D 4 HOH 30 230 9  HOH HOH A . 
D 4 HOH 31 231 44 HOH HOH A . 
D 4 HOH 32 232 30 HOH HOH A . 
D 4 HOH 33 233 33 HOH HOH A . 
D 4 HOH 34 234 5  HOH HOH A . 
D 4 HOH 35 235 23 HOH HOH A . 
D 4 HOH 36 236 11 HOH HOH A . 
D 4 HOH 37 237 29 HOH HOH A . 
D 4 HOH 38 238 28 HOH HOH A . 
D 4 HOH 39 239 16 HOH HOH A . 
D 4 HOH 40 240 48 HOH HOH A . 
D 4 HOH 41 241 24 HOH HOH A . 
D 4 HOH 42 242 19 HOH HOH A . 
D 4 HOH 43 243 26 HOH HOH A . 
D 4 HOH 44 244 39 HOH HOH A . 
D 4 HOH 45 245 43 HOH HOH A . 
D 4 HOH 46 246 32 HOH HOH A . 
D 4 HOH 47 247 25 HOH HOH A . 
D 4 HOH 48 248 37 HOH HOH A . 
D 4 HOH 49 249 49 HOH HOH A . 
D 4 HOH 50 250 47 HOH HOH A . 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   monomeric 
_pdbx_struct_assembly.oligomeric_count     1 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 570  ? 
1 MORE         -11  ? 
1 'SSA (A^2)'  5340 ? 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_pdbx_struct_special_symmetry.id              1 
_pdbx_struct_special_symmetry.PDB_model_num   1 
_pdbx_struct_special_symmetry.auth_asym_id    A 
_pdbx_struct_special_symmetry.auth_comp_id    HOH 
_pdbx_struct_special_symmetry.auth_seq_id     221 
_pdbx_struct_special_symmetry.PDB_ins_code    ? 
_pdbx_struct_special_symmetry.label_asym_id   D 
_pdbx_struct_special_symmetry.label_comp_id   HOH 
_pdbx_struct_special_symmetry.label_seq_id    . 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2019-04-10 
2 'Structure model' 1 1 2019-04-17 
3 'Structure model' 2 0 2019-12-04 
4 'Structure model' 2 1 2023-10-11 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Data collection'            
2 2 'Structure model' 'Database references'        
3 3 'Structure model' 'Author supporting evidence' 
4 3 'Structure model' 'Polymer sequence'           
5 4 'Structure model' 'Data collection'            
6 4 'Structure model' 'Database references'        
7 4 'Structure model' 'Derived calculations'       
8 4 'Structure model' 'Refinement description'     
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1  2 'Structure model' citation                      
2  2 'Structure model' citation_author               
3  3 'Structure model' entity_poly                   
4  3 'Structure model' pdbx_audit_support            
5  4 'Structure model' chem_comp_atom                
6  4 'Structure model' chem_comp_bond                
7  4 'Structure model' database_2                    
8  4 'Structure model' pdbx_initial_refinement_model 
9  4 'Structure model' struct_conn                   
10 4 'Structure model' struct_conn_type              
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  2 'Structure model' '_citation.page_first'                     
2  2 'Structure model' '_citation.page_last'                      
3  2 'Structure model' '_citation.pdbx_database_id_PubMed'        
4  2 'Structure model' '_citation.title'                          
5  2 'Structure model' '_citation_author.name'                    
6  3 'Structure model' '_entity_poly.pdbx_seq_one_letter_code'    
7  3 'Structure model' '_pdbx_audit_support.funding_organization' 
8  4 'Structure model' '_database_2.pdbx_DOI'                     
9  4 'Structure model' '_database_2.pdbx_database_accession'      
10 4 'Structure model' '_struct_conn.conn_type_id'                
11 4 'Structure model' '_struct_conn.id'                          
12 4 'Structure model' '_struct_conn.pdbx_dist_value'             
13 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'      
14 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'          
15 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'           
16 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'         
17 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'         
18 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'          
19 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'          
20 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'           
21 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'         
22 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'         
23 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'         
24 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'          
25 4 'Structure model' '_struct_conn_type.id'                     
# 
loop_
_pdbx_refine_tls.pdbx_refine_id 
_pdbx_refine_tls.id 
_pdbx_refine_tls.details 
_pdbx_refine_tls.method 
_pdbx_refine_tls.origin_x 
_pdbx_refine_tls.origin_y 
_pdbx_refine_tls.origin_z 
_pdbx_refine_tls.T[1][1] 
_pdbx_refine_tls.T[2][2] 
_pdbx_refine_tls.T[3][3] 
_pdbx_refine_tls.T[1][2] 
_pdbx_refine_tls.T[1][3] 
_pdbx_refine_tls.T[2][3] 
_pdbx_refine_tls.L[1][1] 
_pdbx_refine_tls.L[2][2] 
_pdbx_refine_tls.L[3][3] 
_pdbx_refine_tls.L[1][2] 
_pdbx_refine_tls.L[1][3] 
_pdbx_refine_tls.L[2][3] 
_pdbx_refine_tls.S[1][1] 
_pdbx_refine_tls.S[2][2] 
_pdbx_refine_tls.S[3][3] 
_pdbx_refine_tls.S[1][2] 
_pdbx_refine_tls.S[1][3] 
_pdbx_refine_tls.S[2][3] 
_pdbx_refine_tls.S[2][1] 
_pdbx_refine_tls.S[3][1] 
_pdbx_refine_tls.S[3][2] 
'X-RAY DIFFRACTION' 1 ? refined 40.4570 37.5763 26.0691 0.4765 0.6908 0.4607 0.2200 0.0074 -0.1737 1.9387 2.6140 5.8498 1.3031  
-1.7202 1.5908  -0.0269 0.3495  -0.2992 0.1669  -0.3953 -0.7109 0.1725 0.2921  0.3311  
'X-RAY DIFFRACTION' 2 ? refined 38.7663 43.9959 17.9510 0.7514 0.9550 1.1107 0.1103 0.0695 0.0742  1.1899 4.3039 7.3603 -0.7712 
2.4495  -4.5608 -0.3317 2.0317  -1.7458 -0.1838 2.7363  2.2220  1.6061 -0.1704 -2.0385 
'X-RAY DIFFRACTION' 3 ? refined 34.5501 37.6583 28.6475 0.3968 0.5850 0.4201 0.1290 0.0105 -0.0994 2.0260 5.1087 8.3874 -0.9987 
-3.1236 2.7708  -0.2558 -0.0419 0.2722  0.1488  -0.5778 -0.0564 0.3204 0.9977  -0.1002 
# 
loop_
_pdbx_refine_tls_group.pdbx_refine_id 
_pdbx_refine_tls_group.id 
_pdbx_refine_tls_group.refine_tls_id 
_pdbx_refine_tls_group.beg_auth_asym_id 
_pdbx_refine_tls_group.beg_auth_seq_id 
_pdbx_refine_tls_group.end_auth_asym_id 
_pdbx_refine_tls_group.end_auth_seq_id 
_pdbx_refine_tls_group.selection_details 
_pdbx_refine_tls_group.beg_label_asym_id 
_pdbx_refine_tls_group.beg_label_seq_id 
_pdbx_refine_tls_group.end_label_asym_id 
_pdbx_refine_tls_group.end_label_seq_id 
_pdbx_refine_tls_group.selection 
'X-RAY DIFFRACTION' 1 1 A 1  A 11 '(chain A and resid 1:11)'  ? ? ? ? ? 
'X-RAY DIFFRACTION' 2 2 A 12 A 15 '(chain A and resid 12:15)' ? ? ? ? ? 
'X-RAY DIFFRACTION' 3 3 A 16 A 33 '(chain A and resid 16:33)' ? ? ? ? ? 
# 
_pdbx_phasing_MR.entry_id                     6E1U 
_pdbx_phasing_MR.method_rotation              ? 
_pdbx_phasing_MR.method_translation           ? 
_pdbx_phasing_MR.model_details                ? 
_pdbx_phasing_MR.R_factor                     ? 
_pdbx_phasing_MR.R_rigid_body                 ? 
_pdbx_phasing_MR.correlation_coeff_Fo_to_Fc   ? 
_pdbx_phasing_MR.correlation_coeff_Io_to_Ic   ? 
_pdbx_phasing_MR.d_res_high_rotation          5.550 
_pdbx_phasing_MR.d_res_low_rotation           99.910 
_pdbx_phasing_MR.d_res_high_translation       5.550 
_pdbx_phasing_MR.d_res_low_translation        99.910 
_pdbx_phasing_MR.packing                      ? 
_pdbx_phasing_MR.reflns_percent_rotation      ? 
_pdbx_phasing_MR.reflns_percent_translation   ? 
_pdbx_phasing_MR.sigma_F_rotation             ? 
_pdbx_phasing_MR.sigma_F_translation          ? 
_pdbx_phasing_MR.sigma_I_rotation             ? 
_pdbx_phasing_MR.sigma_I_translation          ? 
# 
_phasing.method   MR 
# 
loop_
_software.citation_id 
_software.classification 
_software.compiler_name 
_software.compiler_version 
_software.contact_author 
_software.contact_author_email 
_software.date 
_software.description 
_software.dependencies 
_software.hardware 
_software.language 
_software.location 
_software.mods 
_software.name 
_software.os 
_software.os_version 
_software.type 
_software.version 
_software.pdbx_ordinal 
? 'data scaling'    ? ? ? ? ? ? ? ? ? ? ? Aimless     ? ? ? 0.5.27 1 
? phasing           ? ? ? ? ? ? ? ? ? ? ? PHASER      ? ? ? 2.7.16 2 
? refinement        ? ? ? ? ? ? ? ? ? ? ? PHENIX      ? ? ? .      3 
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24   4 
? 'data reduction'  ? ? ? ? ? ? ? ? ? ? ? DIALS       ? ? ? .      5 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
A   OP3    O  N N 1   
A   P      P  N N 2   
A   OP1    O  N N 3   
A   OP2    O  N N 4   
A   "O5'"  O  N N 5   
A   "C5'"  C  N N 6   
A   "C4'"  C  N R 7   
A   "O4'"  O  N N 8   
A   "C3'"  C  N S 9   
A   "O3'"  O  N N 10  
A   "C2'"  C  N R 11  
A   "O2'"  O  N N 12  
A   "C1'"  C  N R 13  
A   N9     N  Y N 14  
A   C8     C  Y N 15  
A   N7     N  Y N 16  
A   C5     C  Y N 17  
A   C6     C  Y N 18  
A   N6     N  N N 19  
A   N1     N  Y N 20  
A   C2     C  Y N 21  
A   N3     N  Y N 22  
A   C4     C  Y N 23  
A   HOP3   H  N N 24  
A   HOP2   H  N N 25  
A   "H5'"  H  N N 26  
A   "H5''" H  N N 27  
A   "H4'"  H  N N 28  
A   "H3'"  H  N N 29  
A   "HO3'" H  N N 30  
A   "H2'"  H  N N 31  
A   "HO2'" H  N N 32  
A   "H1'"  H  N N 33  
A   H8     H  N N 34  
A   H61    H  N N 35  
A   H62    H  N N 36  
A   H2     H  N N 37  
C   OP3    O  N N 38  
C   P      P  N N 39  
C   OP1    O  N N 40  
C   OP2    O  N N 41  
C   "O5'"  O  N N 42  
C   "C5'"  C  N N 43  
C   "C4'"  C  N R 44  
C   "O4'"  O  N N 45  
C   "C3'"  C  N S 46  
C   "O3'"  O  N N 47  
C   "C2'"  C  N R 48  
C   "O2'"  O  N N 49  
C   "C1'"  C  N R 50  
C   N1     N  N N 51  
C   C2     C  N N 52  
C   O2     O  N N 53  
C   N3     N  N N 54  
C   C4     C  N N 55  
C   N4     N  N N 56  
C   C5     C  N N 57  
C   C6     C  N N 58  
C   HOP3   H  N N 59  
C   HOP2   H  N N 60  
C   "H5'"  H  N N 61  
C   "H5''" H  N N 62  
C   "H4'"  H  N N 63  
C   "H3'"  H  N N 64  
C   "HO3'" H  N N 65  
C   "H2'"  H  N N 66  
C   "HO2'" H  N N 67  
C   "H1'"  H  N N 68  
C   H41    H  N N 69  
C   H42    H  N N 70  
C   H5     H  N N 71  
C   H6     H  N N 72  
G   OP3    O  N N 73  
G   P      P  N N 74  
G   OP1    O  N N 75  
G   OP2    O  N N 76  
G   "O5'"  O  N N 77  
G   "C5'"  C  N N 78  
G   "C4'"  C  N R 79  
G   "O4'"  O  N N 80  
G   "C3'"  C  N S 81  
G   "O3'"  O  N N 82  
G   "C2'"  C  N R 83  
G   "O2'"  O  N N 84  
G   "C1'"  C  N R 85  
G   N9     N  Y N 86  
G   C8     C  Y N 87  
G   N7     N  Y N 88  
G   C5     C  Y N 89  
G   C6     C  N N 90  
G   O6     O  N N 91  
G   N1     N  N N 92  
G   C2     C  N N 93  
G   N2     N  N N 94  
G   N3     N  N N 95  
G   C4     C  Y N 96  
G   HOP3   H  N N 97  
G   HOP2   H  N N 98  
G   "H5'"  H  N N 99  
G   "H5''" H  N N 100 
G   "H4'"  H  N N 101 
G   "H3'"  H  N N 102 
G   "HO3'" H  N N 103 
G   "H2'"  H  N N 104 
G   "HO2'" H  N N 105 
G   "H1'"  H  N N 106 
G   H8     H  N N 107 
G   H1     H  N N 108 
G   H21    H  N N 109 
G   H22    H  N N 110 
HMJ C10    C  Y N 111 
HMJ C15    C  Y N 112 
HMJ C17    C  Y N 113 
HMJ C01    C  N N 114 
HMJ C03    C  N N 115 
HMJ C04    C  N N 116 
HMJ C05    C  N N 117 
HMJ C07    C  Y N 118 
HMJ C08    C  Y N 119 
HMJ C09    C  Y N 120 
HMJ C11    C  Y N 121 
HMJ C12    C  Y N 122 
HMJ C14    C  Y N 123 
HMJ C16    C  Y N 124 
HMJ C18    C  Y N 125 
HMJ C19    C  Y N 126 
HMJ N02    N  N N 127 
HMJ O06    O  N N 128 
HMJ O13    O  Y N 129 
HMJ H1     H  N N 130 
HMJ H2     H  N N 131 
HMJ H3     H  N N 132 
HMJ H4     H  N N 133 
HMJ H5     H  N N 134 
HMJ H6     H  N N 135 
HMJ H7     H  N N 136 
HMJ H8     H  N N 137 
HMJ H9     H  N N 138 
HMJ H10    H  N N 139 
HMJ H11    H  N N 140 
HMJ H12    H  N N 141 
HMJ H13    H  N N 142 
HMJ H14    H  N N 143 
HMJ H15    H  N N 144 
HMJ H16    H  N N 145 
HMJ H17    H  N N 146 
HOH O      O  N N 147 
HOH H1     H  N N 148 
HOH H2     H  N N 149 
MG  MG     MG N N 150 
U   OP3    O  N N 151 
U   P      P  N N 152 
U   OP1    O  N N 153 
U   OP2    O  N N 154 
U   "O5'"  O  N N 155 
U   "C5'"  C  N N 156 
U   "C4'"  C  N R 157 
U   "O4'"  O  N N 158 
U   "C3'"  C  N S 159 
U   "O3'"  O  N N 160 
U   "C2'"  C  N R 161 
U   "O2'"  O  N N 162 
U   "C1'"  C  N R 163 
U   N1     N  N N 164 
U   C2     C  N N 165 
U   O2     O  N N 166 
U   N3     N  N N 167 
U   C4     C  N N 168 
U   O4     O  N N 169 
U   C5     C  N N 170 
U   C6     C  N N 171 
U   HOP3   H  N N 172 
U   HOP2   H  N N 173 
U   "H5'"  H  N N 174 
U   "H5''" H  N N 175 
U   "H4'"  H  N N 176 
U   "H3'"  H  N N 177 
U   "HO3'" H  N N 178 
U   "H2'"  H  N N 179 
U   "HO2'" H  N N 180 
U   "H1'"  H  N N 181 
U   H3     H  N N 182 
U   H5     H  N N 183 
U   H6     H  N N 184 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A   OP3   P      sing N N 1   
A   OP3   HOP3   sing N N 2   
A   P     OP1    doub N N 3   
A   P     OP2    sing N N 4   
A   P     "O5'"  sing N N 5   
A   OP2   HOP2   sing N N 6   
A   "O5'" "C5'"  sing N N 7   
A   "C5'" "C4'"  sing N N 8   
A   "C5'" "H5'"  sing N N 9   
A   "C5'" "H5''" sing N N 10  
A   "C4'" "O4'"  sing N N 11  
A   "C4'" "C3'"  sing N N 12  
A   "C4'" "H4'"  sing N N 13  
A   "O4'" "C1'"  sing N N 14  
A   "C3'" "O3'"  sing N N 15  
A   "C3'" "C2'"  sing N N 16  
A   "C3'" "H3'"  sing N N 17  
A   "O3'" "HO3'" sing N N 18  
A   "C2'" "O2'"  sing N N 19  
A   "C2'" "C1'"  sing N N 20  
A   "C2'" "H2'"  sing N N 21  
A   "O2'" "HO2'" sing N N 22  
A   "C1'" N9     sing N N 23  
A   "C1'" "H1'"  sing N N 24  
A   N9    C8     sing Y N 25  
A   N9    C4     sing Y N 26  
A   C8    N7     doub Y N 27  
A   C8    H8     sing N N 28  
A   N7    C5     sing Y N 29  
A   C5    C6     sing Y N 30  
A   C5    C4     doub Y N 31  
A   C6    N6     sing N N 32  
A   C6    N1     doub Y N 33  
A   N6    H61    sing N N 34  
A   N6    H62    sing N N 35  
A   N1    C2     sing Y N 36  
A   C2    N3     doub Y N 37  
A   C2    H2     sing N N 38  
A   N3    C4     sing Y N 39  
C   OP3   P      sing N N 40  
C   OP3   HOP3   sing N N 41  
C   P     OP1    doub N N 42  
C   P     OP2    sing N N 43  
C   P     "O5'"  sing N N 44  
C   OP2   HOP2   sing N N 45  
C   "O5'" "C5'"  sing N N 46  
C   "C5'" "C4'"  sing N N 47  
C   "C5'" "H5'"  sing N N 48  
C   "C5'" "H5''" sing N N 49  
C   "C4'" "O4'"  sing N N 50  
C   "C4'" "C3'"  sing N N 51  
C   "C4'" "H4'"  sing N N 52  
C   "O4'" "C1'"  sing N N 53  
C   "C3'" "O3'"  sing N N 54  
C   "C3'" "C2'"  sing N N 55  
C   "C3'" "H3'"  sing N N 56  
C   "O3'" "HO3'" sing N N 57  
C   "C2'" "O2'"  sing N N 58  
C   "C2'" "C1'"  sing N N 59  
C   "C2'" "H2'"  sing N N 60  
C   "O2'" "HO2'" sing N N 61  
C   "C1'" N1     sing N N 62  
C   "C1'" "H1'"  sing N N 63  
C   N1    C2     sing N N 64  
C   N1    C6     sing N N 65  
C   C2    O2     doub N N 66  
C   C2    N3     sing N N 67  
C   N3    C4     doub N N 68  
C   C4    N4     sing N N 69  
C   C4    C5     sing N N 70  
C   N4    H41    sing N N 71  
C   N4    H42    sing N N 72  
C   C5    C6     doub N N 73  
C   C5    H5     sing N N 74  
C   C6    H6     sing N N 75  
G   OP3   P      sing N N 76  
G   OP3   HOP3   sing N N 77  
G   P     OP1    doub N N 78  
G   P     OP2    sing N N 79  
G   P     "O5'"  sing N N 80  
G   OP2   HOP2   sing N N 81  
G   "O5'" "C5'"  sing N N 82  
G   "C5'" "C4'"  sing N N 83  
G   "C5'" "H5'"  sing N N 84  
G   "C5'" "H5''" sing N N 85  
G   "C4'" "O4'"  sing N N 86  
G   "C4'" "C3'"  sing N N 87  
G   "C4'" "H4'"  sing N N 88  
G   "O4'" "C1'"  sing N N 89  
G   "C3'" "O3'"  sing N N 90  
G   "C3'" "C2'"  sing N N 91  
G   "C3'" "H3'"  sing N N 92  
G   "O3'" "HO3'" sing N N 93  
G   "C2'" "O2'"  sing N N 94  
G   "C2'" "C1'"  sing N N 95  
G   "C2'" "H2'"  sing N N 96  
G   "O2'" "HO2'" sing N N 97  
G   "C1'" N9     sing N N 98  
G   "C1'" "H1'"  sing N N 99  
G   N9    C8     sing Y N 100 
G   N9    C4     sing Y N 101 
G   C8    N7     doub Y N 102 
G   C8    H8     sing N N 103 
G   N7    C5     sing Y N 104 
G   C5    C6     sing N N 105 
G   C5    C4     doub Y N 106 
G   C6    O6     doub N N 107 
G   C6    N1     sing N N 108 
G   N1    C2     sing N N 109 
G   N1    H1     sing N N 110 
G   C2    N2     sing N N 111 
G   C2    N3     doub N N 112 
G   N2    H21    sing N N 113 
G   N2    H22    sing N N 114 
G   N3    C4     sing N N 115 
HMJ C16   C17    doub Y N 116 
HMJ C16   C15    sing Y N 117 
HMJ C17   C18    sing Y N 118 
HMJ C15   C14    doub Y N 119 
HMJ C18   C19    doub Y N 120 
HMJ C14   C19    sing Y N 121 
HMJ C14   O13    sing Y N 122 
HMJ C19   C11    sing Y N 123 
HMJ O13   C12    sing Y N 124 
HMJ C11   C12    doub Y N 125 
HMJ C11   C10    sing Y N 126 
HMJ C12   C09    sing Y N 127 
HMJ C10   C07    doub Y N 128 
HMJ C09   C08    doub Y N 129 
HMJ C05   O06    sing N N 130 
HMJ C05   C04    sing N N 131 
HMJ C07   O06    sing N N 132 
HMJ C07   C08    sing Y N 133 
HMJ C04   N02    sing N N 134 
HMJ C01   N02    sing N N 135 
HMJ N02   C03    sing N N 136 
HMJ C10   H1     sing N N 137 
HMJ C15   H2     sing N N 138 
HMJ C17   H3     sing N N 139 
HMJ C01   H4     sing N N 140 
HMJ C01   H5     sing N N 141 
HMJ C01   H6     sing N N 142 
HMJ C03   H7     sing N N 143 
HMJ C03   H8     sing N N 144 
HMJ C03   H9     sing N N 145 
HMJ C04   H10    sing N N 146 
HMJ C04   H11    sing N N 147 
HMJ C05   H12    sing N N 148 
HMJ C05   H13    sing N N 149 
HMJ C08   H14    sing N N 150 
HMJ C09   H15    sing N N 151 
HMJ C16   H16    sing N N 152 
HMJ C18   H17    sing N N 153 
HOH O     H1     sing N N 154 
HOH O     H2     sing N N 155 
U   OP3   P      sing N N 156 
U   OP3   HOP3   sing N N 157 
U   P     OP1    doub N N 158 
U   P     OP2    sing N N 159 
U   P     "O5'"  sing N N 160 
U   OP2   HOP2   sing N N 161 
U   "O5'" "C5'"  sing N N 162 
U   "C5'" "C4'"  sing N N 163 
U   "C5'" "H5'"  sing N N 164 
U   "C5'" "H5''" sing N N 165 
U   "C4'" "O4'"  sing N N 166 
U   "C4'" "C3'"  sing N N 167 
U   "C4'" "H4'"  sing N N 168 
U   "O4'" "C1'"  sing N N 169 
U   "C3'" "O3'"  sing N N 170 
U   "C3'" "C2'"  sing N N 171 
U   "C3'" "H3'"  sing N N 172 
U   "O3'" "HO3'" sing N N 173 
U   "C2'" "O2'"  sing N N 174 
U   "C2'" "C1'"  sing N N 175 
U   "C2'" "H2'"  sing N N 176 
U   "O2'" "HO2'" sing N N 177 
U   "C1'" N1     sing N N 178 
U   "C1'" "H1'"  sing N N 179 
U   N1    C2     sing N N 180 
U   N1    C6     sing N N 181 
U   C2    O2     doub N N 182 
U   C2    N3     sing N N 183 
U   N3    C4     sing N N 184 
U   N3    H3     sing N N 185 
U   C4    O4     doub N N 186 
U   C4    C5     sing N N 187 
U   C5    C6     doub N N 188 
U   C5    H5     sing N N 189 
U   C6    H6     sing N N 190 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
6E1U 'double helix'        
6E1U 'a-form double helix' 
6E1U 'quadruple helix'     
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A C 1  1_555 A G 20 1_555 0.128  -0.171 0.076  -0.754  -11.729 -0.547  1  A_C1:G20_A  A 1  ? A 20 ? 19 1  
1 A U 2  1_555 A A 19 1_555 0.276  -0.152 0.322  -4.253  -17.056 0.138   2  A_U2:A19_A  A 2  ? A 19 ? 20 1  
1 A G 3  1_555 A C 18 1_555 -0.186 -0.254 0.036  -6.103  -8.813  -2.199  3  A_G3:C18_A  A 3  ? A 18 ? 19 1  
1 A G 4  1_555 A C 17 1_555 -0.093 -0.165 0.135  -2.920  -9.745  -1.699  4  A_G4:C17_A  A 4  ? A 17 ? 19 1  
1 A G 5  1_555 A C 16 1_555 -0.071 -0.117 -0.142 -6.194  -12.051 -0.902  5  A_G5:C16_A  A 5  ? A 16 ? 19 1  
1 A U 6  1_555 A A 28 1_555 -0.565 3.397  1.303  -31.383 -13.029 -69.577 6  A_U6:A28_A  A 6  ? A 28 ? 23 3  
1 A C 7  1_555 A A 29 1_555 4.299  0.193  2.264  -25.423 16.524  -47.109 7  A_C7:A29_A  A 7  ? A 29 ? ?  ?  
1 A G 11 1_555 A C 30 1_555 -0.384 -0.222 0.178  -4.277  -27.075 -0.734  8  A_G11:C30_A A 11 ? A 30 ? 19 1  
1 A G 8  1_555 A A 31 1_555 3.297  -4.008 -0.408 16.535  10.152  -70.813 9  A_G8:A31_A  A 8  ? A 31 ? 10 6  
1 A A 10 1_555 A A 32 1_555 6.428  -4.133 -0.110 10.436  -9.029  -19.244 10 A_A10:A32_A A 10 ? A 32 ? ?  10 
1 A C 9  1_555 A G 33 1_555 0.389  -0.250 -0.016 -0.301  -4.015  -0.467  11 A_C9:G33_A  A 9  ? A 33 ? 19 1  
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A C 1  1_555 A G 20 1_555 A U 2  1_555 A A 19 1_555 0.548  -1.428 3.213  1.316    8.781   37.276   -3.210 -0.681 2.834  13.503  
-2.023  38.282   1  AA_C1U2:A19G20_AA  A 1  ? A 20 ? A 2  ? A 19 ? 
1 A U 2  1_555 A A 19 1_555 A G 3  1_555 A C 18 1_555 -0.396 -1.648 3.128  1.238    8.500   30.161   -4.473 0.940  2.562  15.933  
-2.320  31.333   2  AA_U2G3:C18A19_AA  A 2  ? A 19 ? A 3  ? A 18 ? 
1 A G 3  1_555 A C 18 1_555 A G 4  1_555 A C 17 1_555 0.462  -1.486 3.197  1.223    3.338   29.239   -3.605 -0.660 3.028  6.581   
-2.411  29.450   3  AA_G3G4:C17C18_AA  A 3  ? A 18 ? A 4  ? A 17 ? 
1 A G 4  1_555 A C 17 1_555 A G 5  1_555 A C 16 1_555 0.281  -1.742 3.360  4.794    5.526   36.717   -3.439 0.189  3.086  8.666   
-7.518  37.414   4  AA_G4G5:C16C17_AA  A 4  ? A 17 ? A 5  ? A 16 ? 
1 A G 5  1_555 A C 16 1_555 A U 6  1_555 A A 28 1_555 -6.580 -1.215 1.396  14.922   7.412   17.979   -2.084 13.951 -3.316 19.192  
-38.638 24.466   5  AA_G5U6:A28C16_AA  A 5  ? A 16 ? A 6  ? A 28 ? 
1 A U 6  1_555 A A 28 1_555 A C 7  1_555 A A 29 1_555 2.581  -1.763 3.757  0.631    1.394   48.661   -2.260 -3.076 3.739  1.691   
-0.765  48.684   6  AA_U6C7:A29A28_AA  A 6  ? A 28 ? A 7  ? A 29 ? 
1 A C 7  1_555 A A 29 1_555 A G 11 1_555 A C 30 1_555 0.928  -1.907 0.560  -147.013 -96.560 160.866  -0.927 -0.504 0.597  -48.296 
73.531  179.317  7  AA_C7G11:C30A29_AA A 7  ? A 29 ? A 11 ? A 30 ? 
1 A G 11 1_555 A C 30 1_555 A G 8  1_555 A A 31 1_555 -3.582 2.932  1.706  -166.623 -9.385  -157.183 -1.459 -1.926 1.002  4.700   
-83.440 -177.412 8  AA_G11G8:A31C30_AA A 11 ? A 30 ? A 8  ? A 31 ? 
1 A G 8  1_555 A A 31 1_555 A A 10 1_555 A A 32 1_555 -6.106 2.666  -1.772 153.910  44.612  -18.801  -1.709 -1.867 4.758  -24.602 
84.877  -160.513 9  AA_G8A10:A32A31_AA A 8  ? A 31 ? A 10 ? A 32 ? 
1 A A 10 1_555 A A 32 1_555 A C 9  1_555 A G 33 1_555 1.381  1.004  -3.259 -0.151   -2.471  -56.354  -1.200 1.470  -3.213 2.615   
-0.160  -56.404  10 AA_A10C9:G33A32_AA A 10 ? A 32 ? A 9  ? A 33 ? 
# 
loop_
_pdbx_audit_support.funding_organization 
_pdbx_audit_support.country 
_pdbx_audit_support.grant_number 
_pdbx_audit_support.ordinal 
'National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)' 'United States' ? 1 
'National Institutes of Health/National Cancer Institute (NIH/NCI)'                   'United States' ? 2 
'Japan Society for the Promotion of Science (JSPS)'                                   Japan           ? 3 
# 
_pdbx_entity_instance_feature.ordinal        1 
_pdbx_entity_instance_feature.comp_id        HMJ 
_pdbx_entity_instance_feature.asym_id        ? 
_pdbx_entity_instance_feature.seq_num        ? 
_pdbx_entity_instance_feature.auth_comp_id   HMJ 
_pdbx_entity_instance_feature.auth_asym_id   ? 
_pdbx_entity_instance_feature.auth_seq_num   ? 
_pdbx_entity_instance_feature.feature_type   'SUBJECT OF INVESTIGATION' 
_pdbx_entity_instance_feature.details        ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 '2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amine' HMJ 
3 'MAGNESIUM ION'                                             MG  
4 water                                                       HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   3Q50 
_pdbx_initial_refinement_model.details          ? 
# 
_pdbx_struct_assembly_auth_evidence.id                     1 
_pdbx_struct_assembly_auth_evidence.assembly_id            1 
_pdbx_struct_assembly_auth_evidence.experimental_support   homology 
_pdbx_struct_assembly_auth_evidence.details                ? 
#