HEADER SUGAR BINDING PROTEIN 10-JUL-18 6E20 TITLE CRYSTAL STRUCTURE OF THE DARIO RERIO GALECTIN-1-L2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALECTIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: LGALS2A, LGALS1L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GALECTIN-1, INNATE IMMUNITY INFECTIOUS HEMATOPOIETIC NECROSIS VIRUS KEYWDS 2 (IHNV), DANIO RERIO, ZEBRAFISH, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.GHOSH,M.A.BIANCHET REVDAT 5 11-OCT-23 6E20 1 REMARK HETSYN LINK REVDAT 4 29-JUL-20 6E20 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 27-NOV-19 6E20 1 REMARK REVDAT 2 08-MAY-19 6E20 1 JRNL REVDAT 1 20-MAR-19 6E20 0 JRNL AUTH A.GHOSH,A.BANERJEE,L.M.AMZEL,G.R.VASTA,M.A.BIANCHET JRNL TITL STRUCTURE OF THE ZEBRAFISH GALECTIN-1-L2 AND MODEL OF ITS JRNL TITL 2 INTERACTION WITH THE INFECTIOUS HEMATOPOIETIC NECROSIS VIRUS JRNL TITL 3 (IHNV) ENVELOPE GLYCOPROTEIN. JRNL REF GLYCOBIOLOGY V. 29 419 2019 JRNL REFN ESSN 1460-2423 JRNL PMID 30834446 JRNL DOI 10.1093/GLYCOB/CWZ015 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.A.BIANCHET,H.AHMED,G.R.VASTA,L.M.AMZEL REMARK 1 TITL SOLUBLE BETA-GALACTOSYL-BINDING LECTIN (GALECTIN) FROM TOAD REMARK 1 TITL 2 OVARY: CRYSTALLOGRAPHIC STUDIES OF TWO PROTEIN-SUGAR REMARK 1 TITL 3 COMPLEXES. REMARK 1 REF PROTEINS V. 40 378 2000 REMARK 1 REFN ISSN 0887-3585 REMARK 1 PMID 10861929 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.FENG,A.GHOSH,M.N.AMIN,B.GIOMARELLI,S.SHRIDHAR,A.BANERJEE, REMARK 1 AUTH 2 J.A.FERNANDEZ-ROBLEDO,M.A.BIANCHET,L.X.WANG,I.B.WILSON, REMARK 1 AUTH 3 G.R.VASTA REMARK 1 TITL THE GALECTIN CVGAL1 FROM THE EASTERN OYSTER (CRASSOSTREA REMARK 1 TITL 2 VIRGINICA) BINDS TO BLOOD GROUP A OLIGOSACCHARIDES ON THE REMARK 1 TITL 3 HEMOCYTE SURFACE. REMARK 1 REF J. BIOL. CHEM. V. 288 24394 2013 REMARK 1 REFN ESSN 1083-351X REMARK 1 PMID 23824193 REMARK 1 DOI 10.1074/JBC.M113.476531 REMARK 1 REFERENCE 3 REMARK 1 AUTH C.FENG,A.GHOSH,M.N.AMIN,T.R.BACHVAROFF,S.TASUMI,M.PASEK, REMARK 1 AUTH 2 A.BANERJEE,S.SHRIDHAR,L.X.WANG,M.A.BIANCHET,G.R.VASTA REMARK 1 TITL GALECTIN CVGAL2 FROM THE EASTERN OYSTER (CRASSOSTREA REMARK 1 TITL 2 VIRGINICA) DISPLAYS UNIQUE SPECIFICITY FOR ABH BLOOD GROUP REMARK 1 TITL 3 OLIGOSACCHARIDES AND DIFFERENTIALLY RECOGNIZES SYMPATRIC REMARK 1 TITL 4 PERKINSUS SPECIES. REMARK 1 REF BIOCHEMISTRY V. 54 4711 2015 REMARK 1 REFN ISSN 1520-4995 REMARK 1 PMID 26158802 REMARK 1 DOI 10.1021/ACS.BIOCHEM.5B00362 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 17755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 963 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1261 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2138 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 159 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00000 REMARK 3 B22 (A**2) : 1.00000 REMARK 3 B33 (A**2) : -3.25000 REMARK 3 B12 (A**2) : 0.50000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.772 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2263 ; 0.113 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1950 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3050 ; 1.852 ; 1.680 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4576 ; 1.263 ; 1.605 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 265 ; 7.818 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;37.107 ;24.274 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 359 ;13.395 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.958 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 306 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2505 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 460 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1060 ; 2.412 ; 3.058 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1059 ; 2.412 ; 3.056 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1322 ; 3.494 ; 4.575 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1323 ; 3.493 ; 4.577 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1199 ; 2.984 ; 3.292 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1199 ; 2.984 ; 3.292 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1728 ; 4.502 ; 4.821 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2372 ; 7.534 ;36.058 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2362 ; 7.321 ;35.953 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6E20 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000233596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18718 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.21800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1GAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 0.2 M MAGNESIUM REMARK 280 CHLORIDE HEXAHYDRATE, 30% (V/V) POLYETHG 400, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.21300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 202.42600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 151.81950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 253.03250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.60650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 134 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR B 121 OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS B 52 O HOH B 301 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 87.38 -164.22 REMARK 500 YCM A 69 -154.16 -94.28 REMARK 500 PRO A 78 55.96 -92.75 REMARK 500 GLU A 115 -4.92 83.60 REMARK 500 ASN B 8 13.92 81.27 REMARK 500 ASP B 50 94.97 -167.89 REMARK 500 YCM B 56 59.14 34.61 REMARK 500 YCM B 69 -148.05 -97.95 REMARK 500 PRO B 78 47.06 -93.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 53 O REMARK 620 2 HOH A 322 O 85.1 REMARK 620 3 HOH A 368 O 92.7 93.2 REMARK 620 4 HOH A 373 O 104.3 163.6 99.6 REMARK 620 5 HOH B 303 O 93.6 74.7 165.8 91.2 REMARK 620 6 HOH B 308 O 172.3 88.4 83.6 83.0 88.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 94 OE2 REMARK 620 2 HOH A 306 O 69.3 REMARK 620 3 HOH A 313 O 66.9 114.4 REMARK 620 4 NDG D 1 O7 127.1 110.6 134.7 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GAN RELATED DB: PDB REMARK 900 HOMOLOGOUS PROTEIN DBREF 6E20 A 1 134 UNP Q6TGN5 Q6TGN5_DANRE 1 134 DBREF 6E20 B 1 134 UNP Q6TGN5 Q6TGN5_DANRE 1 134 SEQRES 1 A 134 MET ALA GLY VAL LEU ILE GLN ASN MET SER PHE LYS VAL SEQRES 2 A 134 GLY GLN THR LEU THR ILE THR GLY VAL PRO LYS PRO ASP SEQRES 3 A 134 SER THR ASN PHE ALA ILE ASN ILE GLY HIS SER PRO GLU SEQRES 4 A 134 ASP ILE ALA LEU HIS MET ASN PRO ARG PHE ASP ALA HIS SEQRES 5 A 134 GLY ASP GLN YCM THR ILE VAL CYS ASN SER PHE GLN SER SEQRES 6 A 134 GLY SER TRP YCM GLU GLU HIS ARG ASP ASP ASN PHE PRO SEQRES 7 A 134 PHE ILE GLN ASP LYS GLU PHE GLN ILE LYS ILE THR PHE SEQRES 8 A 134 THR ASN GLU GLU PHE LEU VAL THR LEU PRO ASP GLY SER SEQRES 9 A 134 GLU ILE HIS PHE PRO ASN ARG GLN GLY SER GLU LYS TYR SEQRES 10 A 134 LYS TYR MET TYR PHE GLU GLY GLU VAL ARG ILE GLN GLY SEQRES 11 A 134 VAL GLU ILE LYS SEQRES 1 B 134 MET ALA GLY VAL LEU ILE GLN ASN MET SER PHE LYS VAL SEQRES 2 B 134 GLY GLN THR LEU THR ILE THR GLY VAL PRO LYS PRO ASP SEQRES 3 B 134 SER THR ASN PHE ALA ILE ASN ILE GLY HIS SER PRO GLU SEQRES 4 B 134 ASP ILE ALA LEU HIS MET ASN PRO ARG PHE ASP ALA HIS SEQRES 5 B 134 GLY ASP GLN YCM THR ILE VAL CYS ASN SER PHE GLN SER SEQRES 6 B 134 GLY SER TRP YCM GLU GLU HIS ARG ASP ASP ASN PHE PRO SEQRES 7 B 134 PHE ILE GLN ASP LYS GLU PHE GLN ILE LYS ILE THR PHE SEQRES 8 B 134 THR ASN GLU GLU PHE LEU VAL THR LEU PRO ASP GLY SER SEQRES 9 B 134 GLU ILE HIS PHE PRO ASN ARG GLN GLY SER GLU LYS TYR SEQRES 10 B 134 LYS TYR MET TYR PHE GLU GLY GLU VAL ARG ILE GLN GLY SEQRES 11 B 134 VAL GLU ILE LYS MODRES 6E20 YCM A 56 CYS MODIFIED RESIDUE MODRES 6E20 YCM A 69 CYS MODIFIED RESIDUE MODRES 6E20 YCM B 56 CYS MODIFIED RESIDUE MODRES 6E20 YCM B 69 CYS MODIFIED RESIDUE HET YCM A 56 10 HET YCM A 69 10 HET YCM B 56 10 HET YCM B 69 10 HET NDG C 1 15 HET GAL C 2 11 HET NDG D 1 15 HET GAL D 2 11 HET MG A 203 1 HET MG A 204 1 HETNAM YCM S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM MG MAGNESIUM ION HETSYN YCM CYSTEINE-S-ACETAMIDE HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 1 YCM 4(C5 H10 N2 O3 S) FORMUL 3 NDG 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 5 MG 2(MG 2+) FORMUL 7 HOH *159(H2 O) SHEET 1 AA112 SER A 67 TRP A 68 0 SHEET 2 AA112 ASP A 54 GLN A 64 -1 N GLN A 64 O SER A 67 SHEET 3 AA112 ASP A 40 ALA A 51 -1 N ASN A 46 O VAL A 59 SHEET 4 AA112 PHE A 30 SER A 37 -1 N ILE A 32 O MET A 45 SHEET 5 AA112 LYS A 116 GLY A 124 -1 O GLU A 123 N ALA A 31 SHEET 6 AA112 VAL A 4 LYS A 12 -1 N PHE A 11 O TYR A 117 SHEET 7 AA112 VAL B 4 LYS B 12 -1 O GLN B 7 N LEU A 5 SHEET 8 AA112 LYS B 116 GLY B 124 -1 O MET B 120 N ILE B 6 SHEET 9 AA112 PHE B 30 SER B 37 -1 N ALA B 31 O GLU B 123 SHEET 10 AA112 ASP B 40 ALA B 51 -1 O MET B 45 N ILE B 32 SHEET 11 AA112 ASP B 54 GLN B 64 -1 O ASN B 61 N HIS B 44 SHEET 12 AA112 SER B 67 TRP B 68 -1 O SER B 67 N GLN B 64 SHEET 1 AA212 HIS A 72 ASP A 74 0 SHEET 2 AA212 ASP A 54 GLN A 64 -1 N CYS A 60 O HIS A 72 SHEET 3 AA212 ASP A 40 ALA A 51 -1 N ASN A 46 O VAL A 59 SHEET 4 AA212 PHE A 30 SER A 37 -1 N ILE A 32 O MET A 45 SHEET 5 AA212 LYS A 116 GLY A 124 -1 O GLU A 123 N ALA A 31 SHEET 6 AA212 VAL A 4 LYS A 12 -1 N PHE A 11 O TYR A 117 SHEET 7 AA212 VAL B 4 LYS B 12 -1 O GLN B 7 N LEU A 5 SHEET 8 AA212 LYS B 116 GLY B 124 -1 O MET B 120 N ILE B 6 SHEET 9 AA212 PHE B 30 SER B 37 -1 N ALA B 31 O GLU B 123 SHEET 10 AA212 ASP B 40 ALA B 51 -1 O MET B 45 N ILE B 32 SHEET 11 AA212 ASP B 54 GLN B 64 -1 O ASN B 61 N HIS B 44 SHEET 12 AA212 HIS B 72 ASP B 74 -1 O HIS B 72 N CYS B 60 SHEET 1 AA310 GLU A 105 PRO A 109 0 SHEET 2 AA310 GLU A 95 THR A 99 -1 N VAL A 98 O ILE A 106 SHEET 3 AA310 PHE A 85 PHE A 91 -1 N LYS A 88 O THR A 99 SHEET 4 AA310 THR A 16 PRO A 23 -1 N LEU A 17 O ILE A 89 SHEET 5 AA310 VAL A 126 GLU A 132 -1 O GLU A 132 N THR A 18 SHEET 6 AA310 VAL B 126 LYS B 134 -1 O ILE B 133 N GLN A 129 SHEET 7 AA310 THR B 16 PRO B 23 -1 N THR B 18 O GLU B 132 SHEET 8 AA310 PHE B 85 PHE B 91 -1 O PHE B 85 N GLY B 21 SHEET 9 AA310 GLU B 95 THR B 99 -1 O LEU B 97 N THR B 90 SHEET 10 AA310 GLU B 105 PRO B 109 -1 O PHE B 108 N PHE B 96 LINK C GLN A 55 N YCM A 56 1555 1555 1.33 LINK C YCM A 56 N THR A 57 1555 1555 1.33 LINK C TRP A 68 N YCM A 69 1555 1555 1.33 LINK C YCM A 69 N GLU A 70 1555 1555 1.34 LINK C GLN B 55 N YCM B 56 1555 1555 1.34 LINK C YCM B 56 N THR B 57 1555 1555 1.34 LINK C TRP B 68 N YCM B 69 1555 1555 1.32 LINK C YCM B 69 N GLU B 70 1555 1555 1.33 LINK O4 NDG C 1 C1 GAL C 2 1555 1555 1.42 LINK O4 NDG D 1 C1 GAL D 2 1555 1555 1.42 LINK O GLY A 53 MG MG A 203 1555 1555 1.96 LINK OE2 GLU A 94 MG MG A 204 1555 1555 2.32 LINK MG MG A 203 O HOH A 322 1555 1555 2.35 LINK MG MG A 203 O HOH A 368 1555 1555 2.34 LINK MG MG A 203 O HOH A 373 1555 1555 2.14 LINK MG MG A 203 O HOH B 303 1555 6445 2.34 LINK MG MG A 203 O HOH B 308 1555 6445 2.38 LINK MG MG A 204 O HOH A 306 1555 1555 2.41 LINK MG MG A 204 O HOH A 313 1555 1555 2.34 LINK MG MG A 204 O7 NDG D 1 1555 6545 1.87 CRYST1 40.438 40.438 303.639 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024729 0.014277 0.000000 0.00000 SCALE2 0.000000 0.028555 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003293 0.00000