HEADER GENE REGULATION/INHIBITOR 10-JUL-18 6E23 TITLE DISPLACEMENT OF WDR5 FROM CHROMATIN BY A PHARMACOLOGICAL WIN SITE TITLE 2 INHIBITOR WITH PICOMOLAR AFFINITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS WDR5, WIN-SITE, FRAGMENT SCREENING, STRUCTURE-BASED DESIGN, MIXED- KEYWDS 2 LINEAGE LEUKEMIA, DNA BINDING PROTEIN, DNA BINDING PROTEIN-INHIBITOR KEYWDS 3 COMPLEX, GENE REGULATION, GENE REGULATION-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.PHAN,S.W.FESIK REVDAT 4 11-OCT-23 6E23 1 REMARK REVDAT 3 18-DEC-19 6E23 1 REMARK REVDAT 2 20-MAR-19 6E23 1 JRNL REVDAT 1 13-MAR-19 6E23 0 JRNL AUTH E.R.AHO,J.WANG,R.D.GOGLIOTTI,G.C.HOWARD,J.PHAN,P.ACHARYA, JRNL AUTH 2 J.D.MACDONALD,K.CHENG,S.L.LOREY,B.LU,S.WENZEL,A.M.FOSHAGE, JRNL AUTH 3 J.ALVARADO,F.WANG,J.G.SHAW,B.ZHAO,A.M.WEISSMILLER, JRNL AUTH 4 L.R.THOMAS,C.R.VAKOC,M.D.HALL,S.W.HIEBERT,Q.LIU, JRNL AUTH 5 S.R.STAUFFER,S.W.FESIK,W.P.TANSEY JRNL TITL DISPLACEMENT OF WDR5 FROM CHROMATIN BY A WIN SITE INHIBITOR JRNL TITL 2 WITH PICOMOLAR AFFINITY. JRNL REF CELL REP V. 26 2916 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 30865883 JRNL DOI 10.1016/J.CELREP.2019.02.047 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3139: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 65060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4242 - 3.9905 0.93 4418 140 0.1612 0.1769 REMARK 3 2 3.9905 - 3.1680 0.94 4433 140 0.1597 0.1812 REMARK 3 3 3.1680 - 2.7677 0.96 4550 145 0.1802 0.1957 REMARK 3 4 2.7677 - 2.5147 0.97 4588 146 0.1923 0.2302 REMARK 3 5 2.5147 - 2.3345 0.97 4595 145 0.1902 0.2143 REMARK 3 6 2.3345 - 2.1969 0.97 4584 145 0.1857 0.2402 REMARK 3 7 2.1969 - 2.0869 0.97 4578 146 0.1844 0.1988 REMARK 3 8 2.0869 - 1.9960 0.97 4590 145 0.1869 0.2328 REMARK 3 9 1.9960 - 1.9192 0.96 4519 143 0.1858 0.2438 REMARK 3 10 1.9192 - 1.8530 0.96 4565 145 0.1981 0.2484 REMARK 3 11 1.8530 - 1.7950 0.96 4483 142 0.2121 0.2654 REMARK 3 12 1.7950 - 1.7437 0.96 4555 144 0.2281 0.2648 REMARK 3 13 1.7437 - 1.6978 0.95 4520 143 0.2432 0.2555 REMARK 3 14 1.6978 - 1.6564 0.86 4083 130 0.2726 0.3013 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4923 REMARK 3 ANGLE : 0.828 6688 REMARK 3 CHIRALITY : 0.059 737 REMARK 3 PLANARITY : 0.006 828 REMARK 3 DIHEDRAL : 13.231 2927 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6383 6.9989 -6.1592 REMARK 3 T TENSOR REMARK 3 T11: 0.1565 T22: 0.1924 REMARK 3 T33: 0.1486 T12: -0.0239 REMARK 3 T13: 0.0006 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.5840 L22: 1.0322 REMARK 3 L33: 1.3035 L12: -0.7788 REMARK 3 L13: -0.5664 L23: 0.4708 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: -0.0013 S13: 0.0353 REMARK 3 S21: -0.1068 S22: 0.0395 S23: -0.0603 REMARK 3 S31: -0.0714 S32: 0.0796 S33: -0.0039 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3056 7.5740 1.1769 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: 0.2083 REMARK 3 T33: 0.1810 T12: 0.0023 REMARK 3 T13: -0.0199 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 1.6217 L22: 1.4850 REMARK 3 L33: 1.6987 L12: -0.1821 REMARK 3 L13: -0.5868 L23: -0.0812 REMARK 3 S TENSOR REMARK 3 S11: -0.0894 S12: -0.0042 S13: -0.0144 REMARK 3 S21: -0.0268 S22: 0.0646 S23: 0.1565 REMARK 3 S31: -0.0485 S32: -0.1699 S33: 0.0442 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3266 -4.2652 2.5992 REMARK 3 T TENSOR REMARK 3 T11: 0.2146 T22: 0.2738 REMARK 3 T33: 0.2699 T12: -0.0458 REMARK 3 T13: 0.0426 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 2.8770 L22: 1.4465 REMARK 3 L33: 1.7083 L12: -0.7951 REMARK 3 L13: 0.4385 L23: -0.4049 REMARK 3 S TENSOR REMARK 3 S11: -0.1398 S12: -0.0079 S13: -0.4335 REMARK 3 S21: 0.0287 S22: 0.0473 S23: 0.2529 REMARK 3 S31: 0.3871 S32: -0.3406 S33: 0.1234 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7455 -10.3195 2.3265 REMARK 3 T TENSOR REMARK 3 T11: 0.2526 T22: 0.1625 REMARK 3 T33: 0.2314 T12: 0.0246 REMARK 3 T13: 0.0680 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 1.6072 L22: 1.2360 REMARK 3 L33: 1.6707 L12: 0.0038 REMARK 3 L13: -0.7815 L23: -0.3063 REMARK 3 S TENSOR REMARK 3 S11: -0.2186 S12: -0.1564 S13: -0.3667 REMARK 3 S21: 0.1071 S22: 0.1029 S23: 0.1209 REMARK 3 S31: 0.3802 S32: 0.0693 S33: 0.0860 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0519 18.8100 34.4094 REMARK 3 T TENSOR REMARK 3 T11: 0.1419 T22: 0.3455 REMARK 3 T33: 0.2106 T12: -0.0145 REMARK 3 T13: -0.0491 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 0.8964 L22: 0.8530 REMARK 3 L33: 1.2478 L12: 0.0470 REMARK 3 L13: -0.2383 L23: -0.1130 REMARK 3 S TENSOR REMARK 3 S11: -0.0544 S12: -0.1284 S13: 0.0293 REMARK 3 S21: 0.1456 S22: 0.0370 S23: -0.2754 REMARK 3 S31: -0.0856 S32: 0.4739 S33: 0.0513 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6404 8.1536 30.0641 REMARK 3 T TENSOR REMARK 3 T11: 0.1707 T22: 0.1990 REMARK 3 T33: 0.1997 T12: -0.0074 REMARK 3 T13: 0.0232 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 1.2082 L22: 1.0213 REMARK 3 L33: 1.8783 L12: -0.2360 REMARK 3 L13: -0.3951 L23: 0.1613 REMARK 3 S TENSOR REMARK 3 S11: -0.1086 S12: 0.0642 S13: -0.1698 REMARK 3 S21: 0.0486 S22: -0.0604 S23: 0.0443 REMARK 3 S31: 0.3259 S32: -0.0670 S33: 0.1439 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 168 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7392 22.6758 23.5857 REMARK 3 T TENSOR REMARK 3 T11: 0.1541 T22: 0.2987 REMARK 3 T33: 0.1767 T12: 0.0462 REMARK 3 T13: -0.0146 T23: -0.0520 REMARK 3 L TENSOR REMARK 3 L11: 0.3727 L22: 0.6397 REMARK 3 L33: 2.2547 L12: 0.1679 REMARK 3 L13: -0.1348 L23: -0.6503 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: 0.1001 S13: 0.0529 REMARK 3 S21: -0.0392 S22: -0.0421 S23: 0.2320 REMARK 3 S31: -0.3357 S32: -0.5672 S33: 0.0803 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 234 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7753 31.5075 26.1287 REMARK 3 T TENSOR REMARK 3 T11: 0.2448 T22: 0.2042 REMARK 3 T33: 0.1915 T12: -0.0667 REMARK 3 T13: 0.0027 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.1498 L22: 1.7437 REMARK 3 L33: 2.4904 L12: -0.0139 REMARK 3 L13: -0.1588 L23: -0.2955 REMARK 3 S TENSOR REMARK 3 S11: 0.1206 S12: 0.0021 S13: 0.2133 REMARK 3 S21: -0.0286 S22: 0.0158 S23: -0.0968 REMARK 3 S31: -0.6429 S32: 0.2223 S33: -0.1033 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E23 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235592. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65103 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 6D9X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.0 OR HEPES PH 7.5, REMARK 280 0.2 M AMMONIUM ACETATE, 28% TO 32% PEG3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 THR A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 PRO A 30 REMARK 465 VAL A 31 REMARK 465 ILE A 210 REMARK 465 ASP A 211 REMARK 465 ASP A 212 REMARK 465 ASP A 213 REMARK 465 SER B 22 REMARK 465 ALA B 23 REMARK 465 THR B 24 REMARK 465 GLN B 25 REMARK 465 SER B 26 REMARK 465 LYS B 27 REMARK 465 PRO B 28 REMARK 465 THR B 29 REMARK 465 PRO B 30 REMARK 465 VAL B 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 504 O HOH B 622 1.89 REMARK 500 O HOH A 533 O HOH A 713 1.97 REMARK 500 O HOH A 745 O HOH A 747 1.97 REMARK 500 O HOH B 693 O HOH B 749 2.01 REMARK 500 OG SER A 91 O HOH A 501 2.02 REMARK 500 O HOH A 697 O HOH A 764 2.04 REMARK 500 O HOH A 647 O HOH A 695 2.05 REMARK 500 NZ LYS B 78 O HOH B 501 2.07 REMARK 500 O HOH A 598 O HOH A 754 2.08 REMARK 500 NZ LYS B 38 O HOH B 502 2.08 REMARK 500 O HOH B 552 O HOH B 668 2.10 REMARK 500 O HOH A 502 O HOH A 713 2.12 REMARK 500 O HOH A 537 O HOH A 580 2.15 REMARK 500 O HOH B 687 O HOH B 729 2.16 REMARK 500 O HOH B 543 O HOH B 692 2.16 REMARK 500 O HOH B 520 O HOH B 642 2.19 REMARK 500 O HOH A 632 O HOH A 668 2.19 REMARK 500 OD1 ASP B 213 O HOH B 503 2.19 REMARK 500 O HOH A 742 O HOH A 781 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 735 O HOH B 630 1454 1.87 REMARK 500 O HOH B 710 O HOH B 718 1655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 234 37.10 -84.29 REMARK 500 LYS A 259 -33.88 -131.54 REMARK 500 LEU A 321 -163.09 -76.34 REMARK 500 ASP A 324 -59.51 -122.22 REMARK 500 GLU B 151 3.75 81.85 REMARK 500 ASP B 211 73.64 -150.26 REMARK 500 LEU B 234 49.83 -85.87 REMARK 500 ASN B 257 89.91 -155.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HLJ A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HLJ B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6D9X RELATED DB: PDB DBREF 6E23 A 22 334 UNP P61964 WDR5_HUMAN 22 334 DBREF 6E23 B 22 334 UNP P61964 WDR5_HUMAN 22 334 SEQRES 1 A 313 SER ALA THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN SEQRES 2 A 313 TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA SEQRES 3 A 313 VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU SEQRES 4 A 313 ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY SEQRES 5 A 313 ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS SEQRES 6 A 313 LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER SEQRES 7 A 313 ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS SEQRES 8 A 313 ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU SEQRES 9 A 313 LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN SEQRES 10 A 313 PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU SEQRES 11 A 313 SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU SEQRES 12 A 313 LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL SEQRES 13 A 313 HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER SEQRES 14 A 313 TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY SEQRES 15 A 313 GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO SEQRES 16 A 313 VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE SEQRES 17 A 313 LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP SEQRES 18 A 313 TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS SEQRES 19 A 313 LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL SEQRES 20 A 313 THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN SEQRES 21 A 313 LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL SEQRES 22 A 313 GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR SEQRES 23 A 313 ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA SEQRES 24 A 313 LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP SEQRES 25 A 313 CYS SEQRES 1 B 313 SER ALA THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN SEQRES 2 B 313 TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA SEQRES 3 B 313 VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU SEQRES 4 B 313 ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY SEQRES 5 B 313 ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS SEQRES 6 B 313 LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER SEQRES 7 B 313 ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS SEQRES 8 B 313 ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU SEQRES 9 B 313 LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN SEQRES 10 B 313 PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU SEQRES 11 B 313 SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU SEQRES 12 B 313 LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL SEQRES 13 B 313 HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER SEQRES 14 B 313 TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY SEQRES 15 B 313 GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO SEQRES 16 B 313 VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE SEQRES 17 B 313 LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP SEQRES 18 B 313 TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS SEQRES 19 B 313 LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL SEQRES 20 B 313 THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN SEQRES 21 B 313 LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL SEQRES 22 B 313 GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR SEQRES 23 B 313 ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA SEQRES 24 B 313 LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP SEQRES 25 B 313 CYS HET HLJ A 401 34 HET HLJ B 401 34 HET EPE B 402 15 HETNAM HLJ N-[(3,4-DICHLOROPHENYL)METHYL]-3-(6-FLUORO-2- HETNAM 2 HLJ METHYLPYRIDIN-3-YL)-5-{[(2E)-2-IMINO-3-METHYL-2,3- HETNAM 3 HLJ DIHYDRO-1H-IMIDAZOL-1-YL]METHYL}BENZAMIDE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 3 HLJ 2(C25 H22 CL2 F N5 O) FORMUL 5 EPE C8 H18 N2 O4 S FORMUL 6 HOH *533(H2 O) SHEET 1 AA1 4 ALA A 36 LEU A 41 0 SHEET 2 AA1 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 AA1 4 ILE A 315 ALA A 320 -1 N ILE A 316 O TRP A 330 SHEET 4 AA1 4 VAL A 304 CYS A 309 -1 N SER A 306 O ALA A 319 SHEET 1 AA2 4 VAL A 48 PHE A 53 0 SHEET 2 AA2 4 TRP A 59 SER A 64 -1 O ALA A 61 N LYS A 52 SHEET 3 AA2 4 LEU A 68 GLY A 73 -1 O TRP A 72 N LEU A 60 SHEET 4 AA2 4 PHE A 79 SER A 84 -1 O ILE A 83 N ILE A 69 SHEET 1 AA3 4 ILE A 90 TRP A 95 0 SHEET 2 AA3 4 LEU A 101 SER A 106 -1 O ALA A 105 N SER A 91 SHEET 3 AA3 4 LEU A 111 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 AA3 4 CYS A 121 LEU A 125 -1 O LEU A 122 N ILE A 113 SHEET 1 AA4 4 VAL A 132 PHE A 137 0 SHEET 2 AA4 4 LEU A 143 SER A 148 -1 O VAL A 145 N ASN A 136 SHEET 3 AA4 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 AA4 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 AA5 4 VAL A 174 PHE A 179 0 SHEET 2 AA5 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 AA5 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 AA5 4 CYS A 205 THR A 208 -1 O LEU A 206 N ILE A 197 SHEET 1 AA6 4 VAL A 217 PHE A 222 0 SHEET 2 AA6 4 TYR A 228 THR A 233 -1 O LEU A 230 N LYS A 221 SHEET 3 AA6 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 AA6 4 LYS A 247 TYR A 252 -1 O LEU A 249 N LEU A 240 SHEET 1 AA7 4 ALA A 264 SER A 267 0 SHEET 2 AA7 4 TRP A 273 SER A 276 -1 O TRP A 273 N SER A 267 SHEET 3 AA7 4 VAL A 283 ASN A 287 -1 O TYR A 284 N SER A 276 SHEET 4 AA7 4 ILE A 293 LEU A 297 -1 O LEU A 297 N VAL A 283 SHEET 1 AA8 4 ALA B 36 LEU B 41 0 SHEET 2 AA8 4 ILE B 327 LYS B 331 -1 O ILE B 327 N LEU B 41 SHEET 3 AA8 4 ILE B 315 ALA B 320 -1 N ILE B 316 O TRP B 330 SHEET 4 AA8 4 VAL B 304 CYS B 309 -1 N ALA B 308 O ALA B 317 SHEET 1 AA9 4 VAL B 48 PHE B 53 0 SHEET 2 AA9 4 TRP B 59 SER B 64 -1 O SER B 63 N SER B 49 SHEET 3 AA9 4 LEU B 68 GLY B 73 -1 O TRP B 72 N LEU B 60 SHEET 4 AA9 4 PHE B 79 SER B 84 -1 O ILE B 83 N ILE B 69 SHEET 1 AB1 4 ILE B 90 TRP B 95 0 SHEET 2 AB1 4 LEU B 101 SER B 106 -1 O ALA B 105 N SER B 91 SHEET 3 AB1 4 THR B 110 ASP B 115 -1 O TRP B 114 N LEU B 102 SHEET 4 AB1 4 LYS B 120 LYS B 126 -1 O LEU B 122 N ILE B 113 SHEET 1 AB2 4 VAL B 132 PHE B 137 0 SHEET 2 AB2 4 LEU B 143 SER B 148 -1 O VAL B 145 N ASN B 136 SHEET 3 AB2 4 VAL B 153 ASP B 157 -1 O TRP B 156 N ILE B 144 SHEET 4 AB2 4 CYS B 163 LEU B 167 -1 O LEU B 167 N VAL B 153 SHEET 1 AB3 4 VAL B 174 PHE B 179 0 SHEET 2 AB3 4 LEU B 185 SER B 190 -1 O VAL B 187 N HIS B 178 SHEET 3 AB3 4 LEU B 194 ASP B 199 -1 O TRP B 198 N ILE B 186 SHEET 4 AB3 4 CYS B 205 ASP B 211 -1 O LEU B 206 N ILE B 197 SHEET 1 AB4 4 VAL B 217 PHE B 222 0 SHEET 2 AB4 4 TYR B 228 THR B 233 -1 O LEU B 230 N LYS B 221 SHEET 3 AB4 4 THR B 237 ASP B 242 -1 O TRP B 241 N ILE B 229 SHEET 4 AB4 4 LYS B 247 TYR B 252 -1 O TYR B 252 N LEU B 238 SHEET 1 AB5 4 ALA B 264 SER B 267 0 SHEET 2 AB5 4 TRP B 273 SER B 276 -1 O VAL B 275 N ASN B 265 SHEET 3 AB5 4 VAL B 283 ASN B 287 -1 O TYR B 284 N SER B 276 SHEET 4 AB5 4 ILE B 293 LEU B 297 -1 O VAL B 294 N ILE B 285 CISPEP 1 ASN B 214 PRO B 215 0 4.66 SITE 1 AC1 15 SER A 49 ALA A 65 GLY A 89 ILE A 90 SITE 2 AC1 15 SER A 91 PHE A 133 SER A 175 TYR A 191 SITE 3 AC1 15 LYS A 259 TYR A 260 CYS A 261 PHE A 263 SITE 4 AC1 15 ILE A 305 HOH A 550 HOH A 682 SITE 1 AC2 16 SER B 49 ALA B 65 GLY B 89 ILE B 90 SITE 2 AC2 16 SER B 91 ASP B 92 PHE B 133 SER B 175 SITE 3 AC2 16 TYR B 191 LYS B 259 TYR B 260 CYS B 261 SITE 4 AC2 16 PHE B 263 ILE B 305 EPE B 402 HOH B 564 SITE 1 AC3 4 LYS B 259 HLJ B 401 HOH B 662 HOH B 671 CRYST1 46.888 54.215 64.517 70.19 88.80 74.41 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021327 -0.005949 0.001719 0.00000 SCALE2 0.000000 0.019149 -0.007062 0.00000 SCALE3 0.000000 0.000000 0.016524 0.00000