HEADER SIGNALING PROTEIN 10-JUL-18 6E27 TITLE THE CARD9 CARD DOMAIN-SWAPPED DIMER WITH A ZINC ION BOUND TO ONE OF TITLE 2 THE TWO ZINC BINDING SITES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 9; COMPND 3 CHAIN: C, D; COMPND 4 FRAGMENT: RESIDUES 2-97; COMPND 5 SYNONYM: HCARD9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CARD9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CARD, INNATE IMMUNITY, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.HOLLIDAY,R.FERRAO,G.BOENIG,E.C.DEUBER,W.J.FAIRBROTHER REVDAT 3 13-MAR-24 6E27 1 LINK REVDAT 2 07-NOV-18 6E27 1 JRNL REVDAT 1 26-SEP-18 6E27 0 JRNL AUTH M.J.HOLLIDAY,R.FERRAO,G.DE LEON BOENIG,A.ESTEVEZ,E.HELGASON, JRNL AUTH 2 A.ROHOU,E.C.DUEBER,W.J.FAIRBROTHER JRNL TITL PICOMOLAR ZINC BINDING MODULATES FORMATION OF JRNL TITL 2 BCL10-NUCLEATING ASSEMBLIES OF THE CASPASE RECRUITMENT JRNL TITL 3 DOMAIN (CARD) OF CARD9. JRNL REF J. BIOL. CHEM. V. 293 16803 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30206119 JRNL DOI 10.1074/JBC.RA118.004821 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12-2829_FINAL REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 16494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0940 - 4.1452 0.99 1300 146 0.1897 0.1961 REMARK 3 2 4.1452 - 3.2905 0.99 1289 142 0.1718 0.2478 REMARK 3 3 3.2905 - 2.8747 0.99 1243 138 0.2249 0.2704 REMARK 3 4 2.8747 - 2.6119 0.98 1235 137 0.2248 0.2836 REMARK 3 5 2.6119 - 2.4247 0.99 1243 138 0.2110 0.2882 REMARK 3 6 2.4247 - 2.2817 0.98 1244 138 0.2017 0.2708 REMARK 3 7 2.2817 - 2.1675 0.98 1217 135 0.2096 0.2613 REMARK 3 8 2.1675 - 2.0731 0.99 1224 136 0.2251 0.2748 REMARK 3 9 2.0731 - 1.9933 0.97 1225 136 0.2412 0.3385 REMARK 3 10 1.9933 - 1.9245 0.97 1213 134 0.2651 0.3411 REMARK 3 11 1.9245 - 1.8644 0.99 1219 136 0.2932 0.3137 REMARK 3 12 1.8644 - 1.8111 0.96 1193 133 0.3093 0.3756 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1529 REMARK 3 ANGLE : 1.048 2070 REMARK 3 CHIRALITY : 0.055 238 REMARK 3 PLANARITY : 0.007 261 REMARK 3 DIHEDRAL : 20.717 934 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 3 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2447 -3.1215 -44.4576 REMARK 3 T TENSOR REMARK 3 T11: 0.5759 T22: 0.9971 REMARK 3 T33: 1.2606 T12: -0.0476 REMARK 3 T13: 0.0916 T23: 0.2483 REMARK 3 L TENSOR REMARK 3 L11: 8.6632 L22: 0.1165 REMARK 3 L33: 4.1283 L12: -0.1305 REMARK 3 L13: -2.1930 L23: 0.6743 REMARK 3 S TENSOR REMARK 3 S11: 0.6476 S12: 0.4026 S13: 0.6166 REMARK 3 S21: -0.6754 S22: -1.3950 S23: -3.2303 REMARK 3 S31: -0.1649 S32: 1.8153 S33: -0.0156 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 10 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4936 3.9228 -26.2164 REMARK 3 T TENSOR REMARK 3 T11: 0.2600 T22: 0.2636 REMARK 3 T33: 0.2782 T12: -0.0277 REMARK 3 T13: 0.0120 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 2.7750 L22: 2.7086 REMARK 3 L33: 4.4964 L12: 0.2623 REMARK 3 L13: 0.5833 L23: 2.2258 REMARK 3 S TENSOR REMARK 3 S11: 0.1083 S12: 0.1093 S13: 0.0080 REMARK 3 S21: -0.1194 S22: 0.2311 S23: -0.2692 REMARK 3 S31: -0.2976 S32: 0.4943 S33: -0.2917 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 54 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1097 10.5242 -5.2740 REMARK 3 T TENSOR REMARK 3 T11: 0.2689 T22: 0.2455 REMARK 3 T33: 0.2698 T12: -0.0170 REMARK 3 T13: 0.0242 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 6.3316 L22: 7.1503 REMARK 3 L33: 6.9002 L12: -4.7650 REMARK 3 L13: 5.0159 L23: -2.2507 REMARK 3 S TENSOR REMARK 3 S11: 0.2458 S12: -0.8379 S13: -0.5644 REMARK 3 S21: 0.0640 S22: -0.0749 S23: 0.1875 REMARK 3 S31: 0.0000 S32: -0.3362 S33: -0.2403 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 72 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1695 22.7623 -8.1144 REMARK 3 T TENSOR REMARK 3 T11: 0.2886 T22: 0.3044 REMARK 3 T33: 0.2357 T12: -0.0740 REMARK 3 T13: 0.0439 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 4.8506 L22: 5.1812 REMARK 3 L33: 8.9998 L12: 0.1539 REMARK 3 L13: 1.3933 L23: 1.1068 REMARK 3 S TENSOR REMARK 3 S11: 0.2330 S12: -0.2144 S13: 0.2980 REMARK 3 S21: -0.0979 S22: -0.1189 S23: -0.2390 REMARK 3 S31: -0.8802 S32: 0.0351 S33: -0.1147 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 9 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2944 18.0700 -3.7432 REMARK 3 T TENSOR REMARK 3 T11: 0.3032 T22: 0.1917 REMARK 3 T33: 0.2692 T12: 0.0262 REMARK 3 T13: 0.0267 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 5.0751 L22: 3.7051 REMARK 3 L33: 1.4160 L12: -0.4748 REMARK 3 L13: -2.4600 L23: 1.1441 REMARK 3 S TENSOR REMARK 3 S11: -0.0725 S12: -0.4901 S13: 0.1853 REMARK 3 S21: 0.2256 S22: 0.0571 S23: 0.2468 REMARK 3 S31: -0.0658 S32: 0.1426 S33: -0.0203 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 31 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9046 10.2307 -14.4252 REMARK 3 T TENSOR REMARK 3 T11: 0.3571 T22: 0.2859 REMARK 3 T33: 0.3001 T12: -0.0009 REMARK 3 T13: 0.0813 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 5.1583 L22: 4.3006 REMARK 3 L33: 7.9060 L12: 0.2767 REMARK 3 L13: -1.0165 L23: -5.7615 REMARK 3 S TENSOR REMARK 3 S11: -0.0400 S12: -0.2721 S13: -0.0229 REMARK 3 S21: -0.6019 S22: -0.2359 S23: -0.3266 REMARK 3 S31: 0.4148 S32: 0.4361 S33: 0.3315 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 42 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5053 3.0642 -12.3293 REMARK 3 T TENSOR REMARK 3 T11: 0.4343 T22: 0.3880 REMARK 3 T33: 0.5512 T12: -0.0287 REMARK 3 T13: -0.0126 T23: -0.1166 REMARK 3 L TENSOR REMARK 3 L11: 1.2930 L22: 3.1235 REMARK 3 L33: 3.8498 L12: 1.4575 REMARK 3 L13: 1.6827 L23: 0.3394 REMARK 3 S TENSOR REMARK 3 S11: -0.1541 S12: 0.8181 S13: -0.8785 REMARK 3 S21: -0.1032 S22: 0.7955 S23: -1.0003 REMARK 3 S31: 0.6414 S32: 0.2671 S33: -0.4851 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 54 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6271 5.7018 -25.0721 REMARK 3 T TENSOR REMARK 3 T11: 0.2429 T22: 0.2256 REMARK 3 T33: 0.2309 T12: 0.0321 REMARK 3 T13: -0.0080 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 5.5158 L22: 4.9916 REMARK 3 L33: 3.5205 L12: 1.4695 REMARK 3 L13: -4.0888 L23: -2.6087 REMARK 3 S TENSOR REMARK 3 S11: 0.1164 S12: 0.1743 S13: 0.0185 REMARK 3 S21: 0.1190 S22: -0.0927 S23: 0.0069 REMARK 3 S31: -0.5711 S32: -0.2757 S33: -0.0991 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 72 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4326 -6.8623 -30.9005 REMARK 3 T TENSOR REMARK 3 T11: 0.2297 T22: 0.2203 REMARK 3 T33: 0.2837 T12: 0.0564 REMARK 3 T13: -0.0181 T23: -0.0520 REMARK 3 L TENSOR REMARK 3 L11: 4.0084 L22: 5.5164 REMARK 3 L33: 7.6226 L12: 0.5505 REMARK 3 L13: 1.6263 L23: -2.0316 REMARK 3 S TENSOR REMARK 3 S11: 0.0998 S12: 0.1733 S13: -0.5509 REMARK 3 S21: -0.2901 S22: -0.1061 S23: -0.8205 REMARK 3 S31: 0.7616 S32: 0.3882 S33: 0.0236 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000233303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOV 1, 2016 REMARK 200 DATA SCALING SOFTWARE : XSCALE NOV 1, 2016 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16495 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.811 REMARK 200 RESOLUTION RANGE LOW (A) : 43.094 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.640 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% V/V TACSIMATE, 0.1 M HEPES PH 7.0, REMARK 280 10% W/V POLYETHYLENE GLYCOL MONOMETHYL ETHER 5,000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.73000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 1 REMARK 465 SER C 2 REMARK 465 GLY D 1 REMARK 465 SER D 2 REMARK 465 ASP D 3 REMARK 465 TYR D 4 REMARK 465 GLU D 5 REMARK 465 ASN D 6 REMARK 465 ASP D 7 REMARK 465 ASP D 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP C 3 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG C 59 O HOH C 202 1.56 REMARK 500 O VAL D 19 HG SER D 23 1.58 REMARK 500 O ASP C 51 HH11 ARG C 57 1.58 REMARK 500 O HOH C 251 O HOH C 253 1.94 REMARK 500 O HOH C 238 O HOH D 121 1.98 REMARK 500 O ASN C 6 O HOH C 201 1.99 REMARK 500 SG CYS C 10 O HOH C 201 2.01 REMARK 500 O HOH C 241 O HOH D 132 2.03 REMARK 500 NH2 ARG C 59 O HOH C 202 2.03 REMARK 500 O HOH C 230 O HOH C 246 2.04 REMARK 500 O HOH C 210 O HOH C 245 2.06 REMARK 500 OD2 ASP D 44 O HOH D 101 2.17 REMARK 500 O HOH C 243 O HOH C 248 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HG1 THR C 20 OD1 ASP D 66 2444 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 5 52.21 -145.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 256 DISTANCE = 6.20 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 73 ND1 REMARK 620 2 CYS D 10 SG 112.6 REMARK 620 3 HOH D 129 O 122.1 109.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 101 DBREF 6E27 C 2 97 UNP Q9H257 CARD9_HUMAN 2 97 DBREF 6E27 D 2 97 UNP Q9H257 CARD9_HUMAN 2 97 SEQADV 6E27 GLY C 1 UNP Q9H257 EXPRESSION TAG SEQADV 6E27 GLY D 1 UNP Q9H257 EXPRESSION TAG SEQRES 1 C 97 GLY SER ASP TYR GLU ASN ASP ASP GLU CYS TRP SER VAL SEQRES 2 C 97 LEU GLU GLY PHE ARG VAL THR LEU THR SER VAL ILE ASP SEQRES 3 C 97 PRO SER ARG ILE THR PRO TYR LEU ARG GLN CYS LYS VAL SEQRES 4 C 97 LEU ASN PRO ASP ASP GLU GLU GLN VAL LEU SER ASP PRO SEQRES 5 C 97 ASN LEU VAL ILE ARG LYS ARG LYS VAL GLY VAL LEU LEU SEQRES 6 C 97 ASP ILE LEU GLN ARG THR GLY HIS LYS GLY TYR VAL ALA SEQRES 7 C 97 PHE LEU GLU SER LEU GLU LEU TYR TYR PRO GLN LEU TYR SEQRES 8 C 97 LYS LYS VAL THR GLY LYS SEQRES 1 D 97 GLY SER ASP TYR GLU ASN ASP ASP GLU CYS TRP SER VAL SEQRES 2 D 97 LEU GLU GLY PHE ARG VAL THR LEU THR SER VAL ILE ASP SEQRES 3 D 97 PRO SER ARG ILE THR PRO TYR LEU ARG GLN CYS LYS VAL SEQRES 4 D 97 LEU ASN PRO ASP ASP GLU GLU GLN VAL LEU SER ASP PRO SEQRES 5 D 97 ASN LEU VAL ILE ARG LYS ARG LYS VAL GLY VAL LEU LEU SEQRES 6 D 97 ASP ILE LEU GLN ARG THR GLY HIS LYS GLY TYR VAL ALA SEQRES 7 D 97 PHE LEU GLU SER LEU GLU LEU TYR TYR PRO GLN LEU TYR SEQRES 8 D 97 LYS LYS VAL THR GLY LYS HET ZN C 101 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *89(H2 O) HELIX 1 AA1 GLU C 9 GLU C 15 1 7 HELIX 2 AA2 PHE C 17 ILE C 25 1 9 HELIX 3 AA3 ASP C 26 CYS C 37 1 12 HELIX 4 AA4 ASN C 41 SER C 50 1 10 HELIX 5 AA5 ASN C 53 ARG C 70 1 18 HELIX 6 AA6 GLY C 72 TYR C 87 1 16 HELIX 7 AA7 TYR C 87 THR C 95 1 9 HELIX 8 AA8 CYS D 10 GLU D 15 1 6 HELIX 9 AA9 PHE D 17 ILE D 25 1 9 HELIX 10 AB1 ASP D 26 ARG D 29 5 4 HELIX 11 AB2 ILE D 30 CYS D 37 1 8 HELIX 12 AB3 ASN D 41 SER D 50 1 10 HELIX 13 AB4 ASN D 53 THR D 71 1 19 HELIX 14 AB5 GLY D 72 TYR D 87 1 16 HELIX 15 AB6 TYR D 87 GLY D 96 1 10 LINK ND1 HIS C 73 ZN ZN C 101 1555 1555 1.93 LINK ZN ZN C 101 SG CYS D 10 1555 1555 2.31 LINK ZN ZN C 101 O HOH D 129 1555 1555 2.58 SITE 1 AC1 3 HIS C 73 CYS D 10 HOH D 129 CRYST1 44.010 37.460 56.960 90.00 101.79 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022722 0.000000 0.004742 0.00000 SCALE2 0.000000 0.026695 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017934 0.00000