HEADER LYASE 12-JUL-18 6E2V TITLE MDDEF IN COMPLEX WITH MVAPP, ADPBEF3 AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEVALONATE DIPHOSPHATE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DIPHOSPHOMEVALONATE DECARBOXYLASE; COMPND 5 EC: 4.1.1.33; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_COMMON: STREPTOCOCCUS FAECALIS; SOURCE 4 ORGANISM_TAXID: 1351; SOURCE 5 GENE: MVAD, B6S42_02310; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEVALONATE DIPHOSPHATE DECARBOXYLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR C.V.STAUFFACHER,C.-L.CHEN REVDAT 3 11-OCT-23 6E2V 1 REMARK REVDAT 2 19-AUG-20 6E2V 1 JRNL LINK REVDAT 1 15-JAN-20 6E2V 0 JRNL AUTH C.L.CHEN,L.N.PAUL,J.C.MERMOUD,C.N.STEUSSY,C.V.STAUFFACHER JRNL TITL VISUALIZING THE ENZYME MECHANISM OF MEVALONATE DIPHOSPHATE JRNL TITL 2 DECARBOXYLASE. JRNL REF NAT COMMUN V. 11 3969 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32769976 JRNL DOI 10.1038/S41467-020-17733-0 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 21068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7052 - 4.1962 1.00 2686 172 0.1534 0.1567 REMARK 3 2 4.1962 - 3.3322 1.00 2611 134 0.1628 0.1908 REMARK 3 3 3.3322 - 2.9115 1.00 2577 132 0.1993 0.2128 REMARK 3 4 2.9115 - 2.6455 1.00 2537 131 0.1776 0.2109 REMARK 3 5 2.6455 - 2.4560 1.00 2561 123 0.1801 0.2152 REMARK 3 6 2.4560 - 2.3112 0.99 2493 153 0.1791 0.2154 REMARK 3 7 2.3112 - 2.1955 0.97 2424 135 0.1899 0.2087 REMARK 3 8 2.1955 - 2.1000 0.83 2108 91 0.2030 0.2338 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2630 REMARK 3 ANGLE : 1.120 3566 REMARK 3 CHIRALITY : 0.062 392 REMARK 3 PLANARITY : 0.008 454 REMARK 3 DIHEDRAL : 15.709 938 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235630. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22880 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5V2L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE PRODUCED UNDER THE REMARK 280 CONDITIONS OF 1.6 M AMMONIUM SULFATE, 50 MM SODIUM ACETATE, PH REMARK 280 4.6; BUFFER EXCHANGE WAS PERFORMED UNDER THE CONDITIONS OF 26 % REMARK 280 PEG 3350, 5 MM MGCL2 AND 50 MM SODIUM ACETATE, PH 4.6; CRYSTALS REMARK 280 WERE SOAKED WITH MVAPP, FOLLOWED BY ADPBEF3. THEN CONDENSATION REMARK 280 WAS CONDUCTED AT 30 % PEG 3350, 15% PEG 400, 5 MM MGCL2, 50 MM REMARK 280 SODIUM ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.81800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.29950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.81800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.29950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 646 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 LYS A 327 REMARK 465 GLY A 328 REMARK 465 MET A 329 REMARK 465 ASP A 330 REMARK 465 LYS A 331 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN A 77 O HOH A 502 1.58 REMARK 500 O THR A 301 HG SER A 304 1.59 REMARK 500 O HOH A 619 O HOH A 629 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 97 142.43 -179.83 REMARK 500 HIS A 156 13.23 -141.62 REMARK 500 ASN A 170 17.49 57.26 REMARK 500 ASN A 183 113.49 -173.81 REMARK 500 LYS A 226 43.63 37.14 REMARK 500 ASP A 282 -152.95 -121.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 106 OG REMARK 620 2 DP6 A 403 O2A 94.7 REMARK 620 3 ADP A 405 O1B 91.1 169.2 REMARK 620 4 ADP A 405 O1A 97.6 84.9 85.3 REMARK 620 5 HOH A 527 O 83.5 95.6 94.2 178.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DP6 A 403 O3A REMARK 620 2 DP6 A 403 O2 58.2 REMARK 620 3 HOH A 527 O 121.0 116.6 REMARK 620 4 HOH A 566 O 134.7 78.6 88.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 404 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 405 O2B REMARK 620 2 BEF A 404 F1 113.1 REMARK 620 3 BEF A 404 F2 106.6 110.2 REMARK 620 4 BEF A 404 F3 105.3 111.7 109.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DP6 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 405 DBREF 6E2V A 1 331 UNP Q9FD68 Q9FD68_ENTFL 1 331 SEQADV 6E2V MET A -23 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V HIS A -22 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V HIS A -21 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V HIS A -20 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V HIS A -19 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V HIS A -18 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V HIS A -17 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V HIS A -16 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V HIS A -15 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V GLY A -14 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V VAL A -13 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V ASP A -12 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V LEU A -11 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V GLY A -10 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V THR A -9 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V GLU A -8 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V ASN A -7 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V LEU A -6 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V TYR A -5 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V PHE A -4 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V GLN A -3 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V SER A -2 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V ASN A -1 UNP Q9FD68 EXPRESSION TAG SEQADV 6E2V ALA A 0 UNP Q9FD68 EXPRESSION TAG SEQRES 1 A 355 MET HIS HIS HIS HIS HIS HIS HIS HIS GLY VAL ASP LEU SEQRES 2 A 355 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET LEU SEQRES 3 A 355 SER GLY LYS ALA ARG ALA HIS THR ASN ILE ALA LEU ILE SEQRES 4 A 355 LYS TYR TRP GLY LYS ALA ASN GLU GLU TYR ILE LEU PRO SEQRES 5 A 355 MET ASN SER SER LEU SER LEU THR LEU ASP ALA PHE TYR SEQRES 6 A 355 THR GLU THR THR VAL THR PHE ASP ALA HIS TYR SER GLU SEQRES 7 A 355 ASP VAL PHE ILE LEU ASN GLY ILE LEU GLN ASN GLU LYS SEQRES 8 A 355 GLN THR LYS LYS VAL LYS GLU PHE LEU ASN LEU VAL ARG SEQRES 9 A 355 GLN GLN ALA ASP CYS THR TRP PHE ALA LYS VAL GLU SER SEQRES 10 A 355 GLN ASN PHE VAL PRO THR ALA ALA GLY LEU ALA SER SER SEQRES 11 A 355 ALA SER GLY LEU ALA ALA LEU ALA GLY ALA CYS ASN VAL SEQRES 12 A 355 ALA LEU GLY LEU ASN LEU SER ALA LYS ASP LEU SER ARG SEQRES 13 A 355 LEU ALA ARG ARG GLY SER GLY SER ALA CYS ARG SER ILE SEQRES 14 A 355 PHE GLY GLY PHE ALA GLN TRP ASN LYS GLY HIS SER ASP SEQRES 15 A 355 GLU THR SER PHE ALA GLU ASN ILE PRO ALA ASN ASN TRP SEQRES 16 A 355 GLU ASN GLU LEU ALA MET LEU PHE ILE LEU ILE ASN ASP SEQRES 17 A 355 GLY GLU LYS ASP VAL SER SER ARG ASP GLY MET LYS ARG SEQRES 18 A 355 THR VAL GLU THR SER SER PHE TYR GLN GLY TRP LEU ASP SEQRES 19 A 355 ASN VAL GLU LYS ASP LEU SER GLN VAL HIS GLU ALA ILE SEQRES 20 A 355 LYS THR LYS ASP PHE PRO ARG LEU GLY GLU ILE ILE GLU SEQRES 21 A 355 ALA ASN GLY LEU ARG MET HIS GLY THR THR LEU GLY ALA SEQRES 22 A 355 VAL PRO PRO PHE THR TYR TRP SER PRO GLY SER LEU GLN SEQRES 23 A 355 ALA MET ALA LEU VAL ARG GLN ALA ARG ALA LYS GLY ILE SEQRES 24 A 355 PRO CYS TYR PHE THR MET ASP ALA GLY PRO ASN VAL LYS SEQRES 25 A 355 VAL LEU VAL GLU LYS LYS ASN LEU GLU ALA LEU LYS THR SEQRES 26 A 355 PHE LEU SER GLU HIS PHE SER LYS GLU GLN LEU VAL PRO SEQRES 27 A 355 ALA PHE ALA GLY PRO GLY ILE GLU LEU PHE GLU THR LYS SEQRES 28 A 355 GLY MET ASP LYS HET MG A 401 1 HET MG A 402 1 HET DP6 A 403 28 HET BEF A 404 4 HET ADP A 405 39 HETNAM MG MAGNESIUM ION HETNAM DP6 (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY) HETNAM 2 DP6 PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 4 DP6 C6 H14 O10 P2 FORMUL 5 BEF BE F3 1- FORMUL 6 ADP C10 H15 N5 O10 P2 FORMUL 7 HOH *146(H2 O) HELIX 1 AA1 ASN A 65 ASP A 84 1 20 HELIX 2 AA2 ALA A 104 LEU A 121 1 18 HELIX 3 AA3 SER A 126 SER A 138 1 13 HELIX 4 AA4 GLY A 139 SER A 144 5 6 HELIX 5 AA5 ASN A 170 ASN A 173 5 4 HELIX 6 AA6 SER A 190 SER A 202 1 13 HELIX 7 AA7 PHE A 204 THR A 225 1 22 HELIX 8 AA8 ASP A 227 THR A 245 1 19 HELIX 9 AA9 THR A 246 ALA A 249 5 4 HELIX 10 AB1 SER A 257 LYS A 273 1 17 HELIX 11 AB2 ASN A 295 SER A 304 1 10 HELIX 12 AB3 SER A 308 GLU A 310 5 3 SHEET 1 AA1 6 ILE A 62 LEU A 63 0 SHEET 2 AA1 6 VAL A 56 LEU A 59 -1 N LEU A 59 O ILE A 62 SHEET 3 AA1 6 ALA A 89 PHE A 96 1 O VAL A 91 N ILE A 58 SHEET 4 AA1 6 SER A 32 ASP A 49 -1 N TYR A 41 O PHE A 96 SHEET 5 AA1 6 PHE A 149 ASN A 153 -1 O ALA A 150 N SER A 34 SHEET 6 AA1 6 PHE A 162 ASN A 165 -1 O GLU A 164 N GLN A 151 SHEET 1 AA2 6 ILE A 62 LEU A 63 0 SHEET 2 AA2 6 VAL A 56 LEU A 59 -1 N LEU A 59 O ILE A 62 SHEET 3 AA2 6 ALA A 89 PHE A 96 1 O VAL A 91 N ILE A 58 SHEET 4 AA2 6 SER A 32 ASP A 49 -1 N TYR A 41 O PHE A 96 SHEET 5 AA2 6 MET A 1 ILE A 15 -1 N LEU A 14 O LEU A 33 SHEET 6 AA2 6 GLU A 322 PHE A 324 -1 O PHE A 324 N LYS A 5 SHEET 1 AA3 2 LYS A 20 ASN A 22 0 SHEET 2 AA3 2 LEU A 27 PRO A 28 -1 O LEU A 27 N ALA A 21 SHEET 1 AA4 4 CYS A 277 THR A 280 0 SHEET 2 AA4 4 VAL A 287 GLU A 292 -1 O LEU A 290 N TYR A 278 SHEET 3 AA4 4 LEU A 175 ILE A 180 -1 N ILE A 180 O VAL A 287 SHEET 4 AA4 4 LEU A 312 PHE A 316 -1 O VAL A 313 N PHE A 179 LINK OG SER A 106 MG MG A 401 1555 1555 2.16 LINK MG MG A 401 O2A DP6 A 403 1555 1555 2.02 LINK MG MG A 401 O1B ADP A 405 1555 1555 2.12 LINK MG MG A 401 O1A ADP A 405 1555 1555 2.09 LINK MG MG A 401 O HOH A 527 1555 1555 2.13 LINK MG MG A 402 O3A DP6 A 403 1555 1555 2.75 LINK MG MG A 402 O2 DP6 A 403 1555 1555 2.73 LINK MG MG A 402 O HOH A 527 1555 1555 2.66 LINK MG MG A 402 O HOH A 566 1555 1555 2.70 LINK BE BEF A 404 O2B ADP A 405 1555 1555 2.05 CISPEP 1 VAL A 250 PRO A 251 0 -3.86 SITE 1 AC1 5 SER A 106 DP6 A 403 BEF A 404 ADP A 405 SITE 2 AC1 5 HOH A 527 SITE 1 AC2 6 ALA A 104 DP6 A 403 BEF A 404 HOH A 527 SITE 2 AC2 6 HOH A 566 HOH A 583 SITE 1 AC3 19 ALA A 13 TYR A 17 LYS A 20 SER A 106 SITE 2 AC3 19 SER A 138 GLY A 139 SER A 140 ARG A 143 SITE 3 AC3 19 SER A 191 ARG A 192 MET A 195 ASP A 282 SITE 4 AC3 19 MG A 401 MG A 402 BEF A 404 ADP A 405 SITE 5 AC3 19 HOH A 519 HOH A 527 HOH A 583 SITE 1 AC4 12 GLY A 102 ALA A 104 LYS A 187 SER A 191 SITE 2 AC4 12 ASP A 282 ALA A 283 MG A 401 MG A 402 SITE 3 AC4 12 DP6 A 403 ADP A 405 HOH A 527 HOH A 617 SITE 1 AC5 25 THR A 42 PHE A 57 SER A 93 ASN A 95 SITE 2 AC5 25 ALA A 100 ALA A 101 GLY A 102 LEU A 103 SITE 3 AC5 25 ALA A 104 SER A 105 SER A 106 GLY A 109 SITE 4 AC5 25 LEU A 110 LYS A 187 SER A 191 MG A 401 SITE 5 AC5 25 DP6 A 403 BEF A 404 HOH A 519 HOH A 529 SITE 6 AC5 25 HOH A 541 HOH A 557 HOH A 578 HOH A 587 SITE 7 AC5 25 HOH A 610 CRYST1 79.636 98.599 45.632 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012557 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021914 0.00000