HEADER TRANSFERASE 13-JUL-18 6E3A TITLE TRNA 2'-PHOSPHOTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE RNA 2'-PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM (STRAIN ATCC 27405 / SOURCE 3 DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372); SOURCE 4 ORGANISM_COMMON: RUMINICLOSTRIDIUM THERMOCELLUM; SOURCE 5 ORGANISM_TAXID: 203119; SOURCE 6 STRAIN: ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B- SOURCE 7 4536 / VPI 7372; SOURCE 8 GENE: KPTA, CTHE_3059; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KPTA, TPT1, TRPT1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SHUMAN,Y.GOLDGUR,A.BANERJEE REVDAT 3 11-OCT-23 6E3A 1 REMARK REVDAT 2 04-DEC-19 6E3A 1 REMARK REVDAT 1 20-MAR-19 6E3A 0 JRNL AUTH A.BANERJEE,A.MUNIR,L.ABDULLAHU,M.J.DAMHA,Y.GOLDGUR,S.SHUMAN JRNL TITL STRUCTURE OF TRNA SPLICING ENZYME TPT1 ILLUMINATES THE JRNL TITL 2 MECHANISM OF RNA 2'-PO4RECOGNITION AND ADP-RIBOSYLATION. JRNL REF NAT COMMUN V. 10 218 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30644400 JRNL DOI 10.1038/S41467-018-08211-9 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 52935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.800 REMARK 3 FREE R VALUE TEST SET COUNT : 3665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2424 - 4.1472 1.00 3577 138 0.1572 0.1676 REMARK 3 2 4.1472 - 3.2920 1.00 3597 143 0.1417 0.1773 REMARK 3 3 3.2920 - 2.8759 1.00 3570 142 0.1561 0.2010 REMARK 3 4 2.8759 - 2.6130 1.00 3607 143 0.1564 0.1439 REMARK 3 5 2.6130 - 2.4257 1.00 3541 142 0.1689 0.1783 REMARK 3 6 2.4257 - 2.2827 1.00 3630 144 0.1661 0.2250 REMARK 3 7 2.2827 - 2.1684 1.00 3574 138 0.1597 0.1683 REMARK 3 8 2.1684 - 2.0740 1.00 3580 144 0.1544 0.1839 REMARK 3 9 2.0740 - 1.9942 1.00 3594 144 0.1585 0.2105 REMARK 3 10 1.9942 - 1.9254 1.00 3559 144 0.1586 0.1892 REMARK 3 11 1.9254 - 1.8652 1.00 3616 142 0.1589 0.1715 REMARK 3 12 1.8652 - 1.8118 1.00 3544 144 0.1643 0.2142 REMARK 3 13 1.8118 - 1.7641 1.00 3605 138 0.1682 0.1805 REMARK 3 14 1.7641 - 1.7211 1.00 3525 138 0.1725 0.2000 REMARK 3 15 1.7211 - 1.6820 1.00 3641 143 0.1682 0.2019 REMARK 3 16 1.6820 - 1.6462 1.00 3597 140 0.1751 0.2213 REMARK 3 17 1.6462 - 1.6132 1.00 3565 144 0.1672 0.1742 REMARK 3 18 1.6132 - 1.5828 1.00 3591 135 0.1850 0.2229 REMARK 3 19 1.5828 - 1.5545 1.00 3608 143 0.1832 0.2072 REMARK 3 20 1.5545 - 1.5282 1.00 3540 139 0.1974 0.1706 REMARK 3 21 1.5282 - 1.5035 1.00 3614 144 0.2021 0.2272 REMARK 3 22 1.5035 - 1.4804 1.00 3532 142 0.2067 0.1988 REMARK 3 23 1.4804 - 1.4586 1.00 3640 138 0.2335 0.2316 REMARK 3 24 1.4586 - 1.4381 1.00 3504 140 0.2562 0.2980 REMARK 3 25 1.4381 - 1.4186 0.99 3638 146 0.2814 0.2581 REMARK 3 26 1.4186 - 1.4002 0.93 3281 127 0.3062 0.2805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 1605 REMARK 3 ANGLE : 1.467 2180 REMARK 3 CHIRALITY : 0.098 230 REMARK 3 PLANARITY : 0.010 260 REMARK 3 DIHEDRAL : 9.988 602 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8302 6.1242 10.3727 REMARK 3 T TENSOR REMARK 3 T11: 0.2846 T22: 0.1512 REMARK 3 T33: 0.2130 T12: 0.0370 REMARK 3 T13: -0.0266 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 5.4714 L22: 4.4163 REMARK 3 L33: 5.1151 L12: -0.5060 REMARK 3 L13: 0.1616 L23: 0.0352 REMARK 3 S TENSOR REMARK 3 S11: -0.0626 S12: 0.0837 S13: 0.2055 REMARK 3 S21: -0.2895 S22: 0.0234 S23: 0.2468 REMARK 3 S31: -0.3270 S32: -0.2572 S33: 0.0034 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1283 14.3023 14.0424 REMARK 3 T TENSOR REMARK 3 T11: 0.4740 T22: 0.2089 REMARK 3 T33: 0.2977 T12: 0.0584 REMARK 3 T13: -0.0152 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 4.9203 L22: 7.7623 REMARK 3 L33: 3.6513 L12: -5.4273 REMARK 3 L13: 3.3093 L23: -2.0460 REMARK 3 S TENSOR REMARK 3 S11: -0.1141 S12: 0.1152 S13: 0.2774 REMARK 3 S21: -0.0198 S22: -0.0722 S23: 0.0215 REMARK 3 S31: -0.6223 S32: -0.1473 S33: 0.2190 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7607 9.2811 18.2393 REMARK 3 T TENSOR REMARK 3 T11: 0.3859 T22: 0.3586 REMARK 3 T33: 0.2933 T12: 0.1335 REMARK 3 T13: -0.0072 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 3.8648 L22: 4.2952 REMARK 3 L33: 8.3620 L12: -3.9550 REMARK 3 L13: 5.1646 L23: -5.8712 REMARK 3 S TENSOR REMARK 3 S11: -0.0261 S12: -0.2317 S13: 0.0178 REMARK 3 S21: -0.2757 S22: 0.0477 S23: 0.3862 REMARK 3 S31: -0.2540 S32: -0.5296 S33: -0.1928 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8201 1.7942 15.8053 REMARK 3 T TENSOR REMARK 3 T11: 0.2533 T22: 0.1607 REMARK 3 T33: 0.2134 T12: 0.0297 REMARK 3 T13: -0.0364 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 3.6477 L22: 4.4600 REMARK 3 L33: 9.0139 L12: -1.0881 REMARK 3 L13: -2.1710 L23: 2.1833 REMARK 3 S TENSOR REMARK 3 S11: -0.0602 S12: -0.0489 S13: -0.0071 REMARK 3 S21: -0.1402 S22: 0.1307 S23: -0.1828 REMARK 3 S31: -0.2693 S32: 0.1909 S33: -0.0547 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2859 -13.5956 16.9645 REMARK 3 T TENSOR REMARK 3 T11: 0.2461 T22: 0.1876 REMARK 3 T33: 0.1711 T12: 0.0737 REMARK 3 T13: 0.0376 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 3.3224 L22: 3.0602 REMARK 3 L33: 5.1903 L12: 0.5447 REMARK 3 L13: 2.2457 L23: -1.1378 REMARK 3 S TENSOR REMARK 3 S11: 0.1231 S12: -0.0431 S13: -0.0133 REMARK 3 S21: 0.2872 S22: -0.0641 S23: -0.0443 REMARK 3 S31: 0.2632 S32: 0.1826 S33: -0.0809 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3865 -21.5238 0.1010 REMARK 3 T TENSOR REMARK 3 T11: 0.4653 T22: 0.2219 REMARK 3 T33: 0.2328 T12: 0.0314 REMARK 3 T13: -0.0278 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.9166 L22: 4.7109 REMARK 3 L33: 3.7906 L12: 2.1244 REMARK 3 L13: 0.0301 L23: 0.1547 REMARK 3 S TENSOR REMARK 3 S11: -0.0787 S12: 0.3523 S13: -0.1124 REMARK 3 S21: -0.3941 S22: 0.1101 S23: -0.0590 REMARK 3 S31: 0.6180 S32: 0.0057 S33: -0.0409 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2985 -10.9511 9.0792 REMARK 3 T TENSOR REMARK 3 T11: 0.2871 T22: 0.1967 REMARK 3 T33: 0.2281 T12: 0.0331 REMARK 3 T13: 0.0112 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.6468 L22: 2.0291 REMARK 3 L33: 3.7883 L12: -0.1060 REMARK 3 L13: 2.1510 L23: -1.0961 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: 0.0404 S13: 0.0182 REMARK 3 S21: -0.1991 S22: 0.0035 S23: -0.0510 REMARK 3 S31: 0.0445 S32: 0.0854 S33: -0.0819 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9154 -17.7554 10.9376 REMARK 3 T TENSOR REMARK 3 T11: 0.2687 T22: 0.2690 REMARK 3 T33: 0.2655 T12: -0.0555 REMARK 3 T13: -0.0035 T23: 0.0462 REMARK 3 L TENSOR REMARK 3 L11: 6.8301 L22: 6.0990 REMARK 3 L33: 7.7553 L12: -1.0142 REMARK 3 L13: 6.3293 L23: 0.0092 REMARK 3 S TENSOR REMARK 3 S11: 0.2498 S12: -0.3905 S13: -0.3362 REMARK 3 S21: 0.0904 S22: 0.0613 S23: 0.4480 REMARK 3 S31: 0.6969 S32: -0.7756 S33: -0.2635 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2396 -20.8897 14.7635 REMARK 3 T TENSOR REMARK 3 T11: 0.3764 T22: 0.2407 REMARK 3 T33: 0.2345 T12: 0.0942 REMARK 3 T13: 0.0002 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 8.1902 L22: 2.4742 REMARK 3 L33: 4.2843 L12: 0.0637 REMARK 3 L13: 3.4605 L23: -0.1016 REMARK 3 S TENSOR REMARK 3 S11: 0.3631 S12: 0.1521 S13: -0.1758 REMARK 3 S21: 0.0873 S22: -0.0816 S23: -0.2437 REMARK 3 S31: 0.6265 S32: 0.3222 S33: -0.2941 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9242 -9.8810 17.1759 REMARK 3 T TENSOR REMARK 3 T11: 0.2640 T22: 0.2178 REMARK 3 T33: 0.2097 T12: 0.0530 REMARK 3 T13: -0.0155 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 4.4148 L22: 5.9704 REMARK 3 L33: 3.7992 L12: -4.5080 REMARK 3 L13: -4.0098 L23: 3.6248 REMARK 3 S TENSOR REMARK 3 S11: 0.1311 S12: -0.1574 S13: 0.3855 REMARK 3 S21: 0.0047 S22: 0.0693 S23: -0.3000 REMARK 3 S31: 0.0301 S32: 0.2259 S33: -0.1637 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4391 -22.3835 9.0904 REMARK 3 T TENSOR REMARK 3 T11: 0.4182 T22: 0.2466 REMARK 3 T33: 0.2345 T12: 0.1181 REMARK 3 T13: -0.0013 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 7.7974 L22: 5.2928 REMARK 3 L33: 8.4513 L12: -2.9754 REMARK 3 L13: 1.4966 L23: 3.9984 REMARK 3 S TENSOR REMARK 3 S11: 0.2018 S12: -0.1692 S13: -0.7424 REMARK 3 S21: -0.2783 S22: -0.1467 S23: -0.2698 REMARK 3 S31: 1.0119 S32: 0.2504 S33: 0.0297 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E3A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.20510 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53083 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 17.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1WFX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.0, 10 %MPD, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.96767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 205.93533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 154.45150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 257.41917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.48383 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 102.96767 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 205.93533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 257.41917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 154.45150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 51.48383 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 434 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 438 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 468 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 472 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 113 O HOH A 301 1.86 REMARK 500 O HOH A 437 O HOH A 442 2.02 REMARK 500 OE2 GLU A 131 O HOH A 302 2.05 REMARK 500 OD1 ASP A 65 O HOH A 303 2.05 REMARK 500 OE1 GLU A 54 O HOH A 304 2.08 REMARK 500 O HOH A 435 O HOH A 448 2.18 REMARK 500 O HOH A 432 O HOH A 484 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 442 O HOH A 444 12555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 121 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 20 58.49 -148.07 REMARK 500 GLN A 119 -118.19 61.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HQG A 202 DBREF 6E3A A 1 182 UNP A3DJX6 KPTA_CLOTH 1 182 SEQRES 1 A 182 MET VAL LEU ILE ASP TYR SER LYS LEU SER LYS GLU VAL SEQRES 2 A 182 ALA TYR ALA LEU ARG HIS ALA PRO TRP GLU TYR GLY LEU SEQRES 3 A 182 GLU LEU ASP ALA GLU GLY TRP VAL ASP ILE ASN GLN LEU SEQRES 4 A 182 LEU SER SER LEU HIS GLU CYS GLU LYS TRP LYS LYS VAL SEQRES 5 A 182 SER GLU HIS ASP LEU HIS VAL MET ILE GLU LYS SER ASP SEQRES 6 A 182 LYS LYS ARG TYR GLU ILE SER ASN GLY LYS ILE ARG ALA SEQRES 7 A 182 LEU TYR GLY HIS SER ILE PRO GLN ARG ILE ILE LYS GLU SEQRES 8 A 182 GLN LYS CYS PRO PRO GLU VAL LEU TYR HIS GLY THR ALA SEQRES 9 A 182 ARG ARG PHE VAL LYS SER ILE LYS GLU LYS GLY LEU GLN SEQRES 10 A 182 PRO GLN GLY ARG GLN TYR VAL HIS LEU SER ALA ASP VAL SEQRES 11 A 182 GLU THR ALA LEU GLN VAL GLY LYS ARG ARG ASP ILE LYS SEQRES 12 A 182 PRO VAL LEU LEU ILE VAL ASN ALA LEU GLU ALA TRP SER SEQRES 13 A 182 GLU GLY ILE LYS PHE TYR LEU GLY ASN ASP LYS VAL TRP SEQRES 14 A 182 LEU ALA ASP ALA ILE PRO SER LYS TYR ILE ARG PHE GLU HET COA A 201 48 HET HQG A 202 40 HETNAM COA COENZYME A HETNAM HQG [[(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3,4- HETNAM 2 HQG BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] HETNAM 3 HQG [(2~{R},3~{S},4~{R},5~{R})-3,4-BIS(OXIDANYL)-5- HETNAM 4 HQG PHOSPHONOOXY-OXOLAN-2-YL]METHYL HYDROGEN PHOSPHATE FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 HQG C15 H24 N5 O17 P3 FORMUL 4 HOH *192(H2 O) HELIX 1 AA1 ASP A 5 HIS A 19 1 15 HELIX 2 AA2 ALA A 20 GLY A 25 5 6 HELIX 3 AA3 ILE A 36 HIS A 44 1 9 HELIX 4 AA4 GLU A 45 LYS A 50 5 6 HELIX 5 AA5 SER A 53 SER A 64 1 12 HELIX 6 AA6 ALA A 104 ARG A 106 5 3 HELIX 7 AA7 PHE A 107 GLY A 115 1 9 HELIX 8 AA8 ASP A 129 ARG A 139 1 11 HELIX 9 AA9 ASN A 150 GLU A 157 1 8 HELIX 10 AB1 PRO A 175 LYS A 177 5 3 SHEET 1 AA1 3 VAL A 34 ASP A 35 0 SHEET 2 AA1 3 LYS A 75 ALA A 78 -1 O ILE A 76 N VAL A 34 SHEET 3 AA1 3 TYR A 69 SER A 72 -1 N SER A 72 O LYS A 75 SHEET 1 AA2 3 LEU A 99 THR A 103 0 SHEET 2 AA2 3 VAL A 145 VAL A 149 -1 O VAL A 149 N LEU A 99 SHEET 3 AA2 3 ILE A 179 ARG A 180 -1 O ARG A 180 N ILE A 148 SHEET 1 AA3 3 VAL A 124 SER A 127 0 SHEET 2 AA3 3 VAL A 168 ALA A 171 -1 O TRP A 169 N LEU A 126 SHEET 3 AA3 3 PHE A 161 LEU A 163 -1 N TYR A 162 O LEU A 170 LINK SG CYS A 46 S1P COA A 201 1555 1555 2.01 SITE 1 AC1 17 SER A 7 SER A 10 LYS A 11 GLU A 12 SITE 2 AC1 17 ALA A 14 TYR A 15 ARG A 18 HIS A 19 SITE 3 AC1 17 CYS A 46 ARG A 68 ARG A 121 HQG A 202 SITE 4 AC1 17 HOH A 306 HOH A 311 HOH A 316 HOH A 338 SITE 5 AC1 17 HOH A 395 SITE 1 AC2 29 ARG A 18 LYS A 66 ARG A 68 TYR A 80 SITE 2 AC2 29 HIS A 101 THR A 103 PHE A 107 SER A 110 SITE 3 AC2 29 ILE A 111 GLY A 115 LEU A 116 GLN A 117 SITE 4 AC2 29 GLN A 119 ARG A 121 VAL A 136 ARG A 139 SITE 5 AC2 29 ARG A 140 COA A 201 HOH A 306 HOH A 311 SITE 6 AC2 29 HOH A 332 HOH A 334 HOH A 339 HOH A 341 SITE 7 AC2 29 HOH A 346 HOH A 350 HOH A 366 HOH A 367 SITE 8 AC2 29 HOH A 371 CRYST1 53.367 53.367 308.903 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018738 0.010818 0.000000 0.00000 SCALE2 0.000000 0.021637 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003237 0.00000