HEADER VIRAL PROTEIN 13-JUL-18 6E3C TITLE NMR SOLUTION STRUCTURE OF THE MONOMERIC FORM OF THE PHAGE L DECORATION TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEC PROTEIN; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE L; SOURCE 3 ORGANISM_TAXID: 45441; SOURCE 4 GENE: DEC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CEMENTING, OB-FOLD, DECORATION, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.L.NEWCOMER,A.T.ALEXANDRESCU,C.M.TESCHKE REVDAT 4 15-MAY-24 6E3C 1 REMARK REVDAT 3 14-JUN-23 6E3C 1 REMARK REVDAT 2 01-JAN-20 6E3C 1 REMARK REVDAT 1 17-APR-19 6E3C 0 JRNL AUTH R.L.NEWCOMER,J.R.SCHRAD,E.B.GILCREASE,S.R.CASJENS,M.FEIG, JRNL AUTH 2 C.M.TESCHKE,A.T.ALEXANDRESCU,K.N.PARENT JRNL TITL THE PHAGE L CAPSID DECORATION PROTEIN HAS A NOVEL OB-FOLD JRNL TITL 2 AND AN UNUSUAL CAPSID BINDING STRATEGY. JRNL REF ELIFE V. 8 2019 JRNL REFN ESSN 2050-084X JRNL PMID 30945633 JRNL DOI 10.7554/ELIFE.45345 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3.1, ARIA 2.3.1. REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E3C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000234938. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 306.15 REMARK 210 PH : 4 REMARK 210 IONIC STRENGTH : 50 (NACL) REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] DECORATION REMARK 210 PROTEIN, 20 MM [U-99% 2H] SODIUM REMARK 210 ACETATE, 50 MM SODIUM CHLORIDE, REMARK 210 100% D2O; 0.5 MM [U-13C; U-15N; REMARK 210 U-2H] DECORATION PROTEIN, 20 MM REMARK 210 SODIUM ACETATE, 100 MM SODIUM REMARK 210 CHLORIDE, 1 MM EDTA, 90% H2O/10% REMARK 210 D2O; 0.5 MM [U-13C, U-15N, 50%- REMARK 210 2H] DECORATION PROTEIN, 20 MM REMARK 210 SODIUM ACETATE, 50 MM SODIUM REMARK 210 CHLORIDE, 1 MM EDTA, 90% H2O/10% REMARK 210 D2O; 0.5 MM [U-15N] DECORATION REMARK 210 PROTEIN, 20 MM SODIUM ACETATE, REMARK 210 50 MM SODIUM CHLORIDE, 1 MM EDTA, REMARK 210 90% H2O/10% D2O; 0.5 MM [U-13C; REMARK 210 U-15N] DECORATION PROTEIN, 20 MM REMARK 210 SODIUM ACETATE, 50 MM SODIIUM REMARK 210 CHLORIDE, 1 MM EDTA, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; LRHNCO; 3D 1H REMARK 210 -13C NOESY BB; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D HN(CA)CO; REMARK 210 2D HSQC; 3D HCCH-TOCSY; 3D CCH- REMARK 210 TOCSY; 3D 1H-15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANALYSIS 2.4, NMRBOX 4.1.13 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO C 8 45.31 -76.42 REMARK 500 1 TYR C 13 -161.75 -117.71 REMARK 500 1 ASP C 15 -165.92 -74.84 REMARK 500 1 LYS C 27 -74.02 -81.01 REMARK 500 1 PRO C 44 30.07 -77.85 REMARK 500 1 ALA C 46 -160.78 -102.36 REMARK 500 1 LYS C 59 107.09 -59.53 REMARK 500 1 PRO C 60 -150.76 -102.24 REMARK 500 1 THR C 87 -34.17 -150.84 REMARK 500 1 SER C 88 -70.35 -95.61 REMARK 500 1 SER C 90 148.86 76.38 REMARK 500 1 SER C 92 -43.61 -150.60 REMARK 500 1 VAL C 93 -78.94 69.15 REMARK 500 1 ALA C 99 -150.20 59.53 REMARK 500 1 SER C 103 44.52 -142.23 REMARK 500 1 THR C 104 -80.45 -83.39 REMARK 500 1 THR C 111 33.05 -92.00 REMARK 500 1 SER C 117 -43.63 -134.45 REMARK 500 1 PHE C 120 -75.92 68.59 REMARK 500 1 ASN C 125 145.80 74.68 REMARK 500 1 VAL C 126 74.01 59.52 REMARK 500 1 THR C 127 -100.01 51.16 REMARK 500 1 ILE C 128 -40.68 -136.02 REMARK 500 1 SER C 132 33.35 -141.24 REMARK 500 2 PHE C 6 -72.07 69.08 REMARK 500 2 THR C 7 117.69 65.26 REMARK 500 2 PRO C 8 103.38 -54.48 REMARK 500 2 ASP C 15 -168.41 -77.33 REMARK 500 2 LYS C 27 -73.69 -90.83 REMARK 500 2 GLU C 40 115.91 -162.34 REMARK 500 2 ALA C 46 -160.69 -66.02 REMARK 500 2 ASP C 47 133.08 99.95 REMARK 500 2 GLN C 48 -152.51 178.08 REMARK 500 2 LYS C 59 108.60 -58.19 REMARK 500 2 PRO C 60 -148.71 -104.76 REMARK 500 2 THR C 87 -54.40 -165.11 REMARK 500 2 SER C 88 -77.50 -60.67 REMARK 500 2 VAL C 93 -81.07 65.23 REMARK 500 2 GLU C 97 -63.31 -136.97 REMARK 500 2 ALA C 99 92.71 -64.17 REMARK 500 2 LEU C 102 163.78 64.90 REMARK 500 2 ALA C 105 29.33 -153.73 REMARK 500 2 VAL C 114 171.45 65.92 REMARK 500 2 SER C 117 18.23 -150.23 REMARK 500 2 VAL C 126 -74.52 -71.84 REMARK 500 2 ILE C 128 -49.77 72.98 REMARK 500 2 THR C 130 95.51 50.36 REMARK 500 2 SER C 132 -45.42 179.28 REMARK 500 3 PHE C 6 22.53 -149.65 REMARK 500 3 ASP C 15 -153.00 -86.65 REMARK 500 REMARK 500 THIS ENTRY HAS 395 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27435 RELATED DB: BMRB DBREF 6E3C C 1 134 UNP Q5C838 Q5C838_9VIRU 1 134 SEQADV 6E3C GLY C -2 UNP Q5C838 EXPRESSION TAG SEQADV 6E3C SER C -1 UNP Q5C838 EXPRESSION TAG SEQADV 6E3C HIS C 0 UNP Q5C838 EXPRESSION TAG SEQRES 1 C 137 GLY SER HIS MET ALA ASN PRO ASN PHE THR PRO SER TRP SEQRES 2 C 137 PRO LEU TYR LYS ASP ALA ASP GLY VAL TYR VAL SER ALA SEQRES 3 C 137 LEU PRO ILE LYS ALA ILE LYS TYR ALA ASN ASP GLY SER SEQRES 4 C 137 ALA ASN ALA GLU PHE ASP GLY PRO TYR ALA ASP GLN TYR SEQRES 5 C 137 MET SER ALA GLN THR VAL ALA VAL PHE LYS PRO GLU VAL SEQRES 6 C 137 GLY GLY TYR LEU PHE ARG SER GLN TYR GLY GLU LEU LEU SEQRES 7 C 137 TYR MET SER LYS THR ALA PHE GLU ALA ASN TYR THR SER SEQRES 8 C 137 ALA SER GLY SER VAL ALA ASN ALA GLU THR ALA ASP LYS SEQRES 9 C 137 LEU SER THR ALA ARG THR ILE THR LEU THR GLY ALA VAL SEQRES 10 C 137 THR GLY SER ALA SER PHE ASP GLY SER ALA ASN VAL THR SEQRES 11 C 137 ILE GLU THR THR SER GLY SER HELIX 1 AA1 SER C 51 PHE C 58 1 8 HELIX 2 AA2 SER C 78 THR C 87 1 10 SHEET 1 AA1 4 TYR C 13 LYS C 14 0 SHEET 2 AA1 4 TYR C 20 TYR C 31 -1 O VAL C 21 N TYR C 13 SHEET 3 AA1 4 ALA C 37 PHE C 41 -1 O GLU C 40 N ALA C 28 SHEET 4 AA1 4 GLN C 48 MET C 50 -1 O MET C 50 N ALA C 37 SHEET 1 AA2 4 TYR C 13 LYS C 14 0 SHEET 2 AA2 4 TYR C 20 TYR C 31 -1 O VAL C 21 N TYR C 13 SHEET 3 AA2 4 TYR C 65 SER C 69 -1 O LEU C 66 N LEU C 24 SHEET 4 AA2 4 LEU C 74 MET C 77 -1 O MET C 77 N TYR C 65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1