HEADER CELL ADHESION 13-JUL-18 6E3F TITLE THE STRUCTURE OF THE C-TERMINAL DOMAINS (C123) OF STREPTOCOCCUS TITLE 2 INTERMEDIUS ANTIGEN I/II (PAS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE CELL-SURFACE ANTIGEN I/II; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN RESIDUES 747-1241; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS INTERMEDIUS; SOURCE 3 ORGANISM_TAXID: 1338; SOURCE 4 GENE: PAS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: BL21(DE3)ONESHOT; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23D KEYWDS DEV IGG FOLD, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR N.SCHORMANN,C.DEIVANAYAGAM REVDAT 4 11-OCT-23 6E3F 1 REMARK REVDAT 3 10-NOV-21 6E3F 1 JRNL REVDAT 2 18-DEC-19 6E3F 1 REMARK REVDAT 1 17-JUL-19 6E3F 0 JRNL AUTH J.L.MIEHER,N.SCHORMANN,R.WU,M.PATEL,S.PURUSHOTHAM,H.WU, JRNL AUTH 2 J.SCOFFIELD,C.DEIVANAYAGAM JRNL TITL STRUCTURE-FUNCTION CHARACTERIZATION OF STREPTOCOCCUS JRNL TITL 2 INTERMEDIUS SURFACE ANTIGEN PAS. JRNL REF J.BACTERIOL. V. 203 17521 2021 JRNL REFN ESSN 1098-5530 JRNL PMID 34339301 JRNL DOI 10.1128/JB.00175-21 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1820 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2527 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.272 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.227 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.194 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3978 ; 0.013 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 3547 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5411 ; 1.631 ; 1.664 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8316 ; 0.952 ; 1.647 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 500 ; 8.206 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;39.297 ;24.925 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 661 ;16.526 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.999 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 541 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4504 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 724 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 750 A 911 REMARK 3 RESIDUE RANGE : A 912 A 1086 REMARK 3 RESIDUE RANGE : A 1087 A 1247 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2926 119.5999 536.6131 REMARK 3 T TENSOR REMARK 3 T11: 0.6625 T22: 0.3787 REMARK 3 T33: 0.0367 T12: 0.2784 REMARK 3 T13: -0.0758 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.7533 L22: 0.4555 REMARK 3 L33: 2.3830 L12: -0.4406 REMARK 3 L13: -1.2636 L23: 0.9093 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: 0.1390 S13: 0.0895 REMARK 3 S21: 0.3100 S22: 0.1410 S23: -0.1095 REMARK 3 S31: 0.2141 S32: 0.0600 S33: -0.1667 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6E3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9719 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 2.3.7 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 2.3.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36912 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 10.2.36 REMARK 200 STARTING MODEL: 3QE5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CITRATE, PH 5.8, 200 MM REMARK 280 AMMONIUM SULFATE, 900 MM LITHIUM SULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.79450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 49.79450 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 257.44350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.79450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 128.72175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.79450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 386.16525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.79450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 386.16525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.79450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 128.72175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 49.79450 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 49.79450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 257.44350 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 49.79450 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 49.79450 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 257.44350 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 49.79450 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 386.16525 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 49.79450 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 128.72175 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 49.79450 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 128.72175 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 49.79450 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 386.16525 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 49.79450 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 49.79450 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 257.44350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 745 REMARK 465 ALA A 746 REMARK 465 HIS A 747 REMARK 465 PHE A 748 REMARK 465 ARG A 749 REMARK 465 TYR A 750 REMARK 465 GLY A 1248 REMARK 465 LEU A 1249 REMARK 465 GLU A 1250 REMARK 465 HIS A 1251 REMARK 465 HIS A 1252 REMARK 465 HIS A 1253 REMARK 465 HIS A 1254 REMARK 465 HIS A 1255 REMARK 465 HIS A 1256 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 761 OD1 ASN A 876 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 752 -166.35 -78.94 REMARK 500 LEU A 753 93.70 77.06 REMARK 500 THR A 774 -153.35 -122.34 REMARK 500 GLN A 779 0.07 84.54 REMARK 500 ALA A 885 -108.84 -137.38 REMARK 500 THR A 991 -61.01 -103.46 REMARK 500 PRO A1005 160.33 -46.74 REMARK 500 GLN A1056 -9.86 -53.35 REMARK 500 ASN A1105 71.46 -107.82 REMARK 500 ASP A1108 134.06 -30.33 REMARK 500 GLN A1110 86.02 -68.33 REMARK 500 ASN A1115 11.30 81.30 REMARK 500 SER A1132 -85.94 -60.82 REMARK 500 PHE A1136 -12.88 -141.04 REMARK 500 SER A1173 130.97 -37.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 952 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 910 OD1 REMARK 620 2 TYR A 911 O 73.7 REMARK 620 3 ASP A 944 OD1 150.1 128.7 REMARK 620 4 ASP A 944 OD2 150.5 79.4 50.2 REMARK 620 5 ASP A 946 OD1 78.0 138.4 72.3 116.9 REMARK 620 6 GLN A 947 OE1 91.1 72.8 79.8 69.3 78.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 967 OD1 REMARK 620 2 TYR A 968 O 104.3 REMARK 620 3 GLU A 970 OE1 168.6 86.7 REMARK 620 4 LYS A1020 O 82.4 172.8 86.8 REMARK 620 5 ALA A1022 O 87.9 86.5 89.9 96.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1302 DBREF 6E3F A 747 1241 UNP Q9KW51 PAS_STRIT 747 1241 SEQADV 6E3F MET A 745 UNP Q9KW51 INITIATING METHIONINE SEQADV 6E3F ALA A 746 UNP Q9KW51 EXPRESSION TAG SEQADV 6E3F GLU A 1242 UNP Q9KW51 EXPRESSION TAG SEQADV 6E3F ASN A 1243 UNP Q9KW51 EXPRESSION TAG SEQADV 6E3F LEU A 1244 UNP Q9KW51 EXPRESSION TAG SEQADV 6E3F TYR A 1245 UNP Q9KW51 EXPRESSION TAG SEQADV 6E3F PHE A 1246 UNP Q9KW51 EXPRESSION TAG SEQADV 6E3F GLN A 1247 UNP Q9KW51 EXPRESSION TAG SEQADV 6E3F GLY A 1248 UNP Q9KW51 EXPRESSION TAG SEQADV 6E3F LEU A 1249 UNP Q9KW51 EXPRESSION TAG SEQADV 6E3F GLU A 1250 UNP Q9KW51 EXPRESSION TAG SEQADV 6E3F HIS A 1251 UNP Q9KW51 EXPRESSION TAG SEQADV 6E3F HIS A 1252 UNP Q9KW51 EXPRESSION TAG SEQADV 6E3F HIS A 1253 UNP Q9KW51 EXPRESSION TAG SEQADV 6E3F HIS A 1254 UNP Q9KW51 EXPRESSION TAG SEQADV 6E3F HIS A 1255 UNP Q9KW51 EXPRESSION TAG SEQADV 6E3F HIS A 1256 UNP Q9KW51 EXPRESSION TAG SEQRES 1 A 512 MET ALA HIS PHE ARG TYR TYR LYS LEU ALA VAL GLN PRO SEQRES 2 A 512 GLN VAL ASN LYS GLU ILE LYS ASN ASN ASN ASP VAL ASP SEQRES 3 A 512 ILE ASP LYS THR LEU VAL ALA LYS GLN SER VAL VAL LYS SEQRES 4 A 512 PHE GLN LEU LYS THR ALA ASP LEU PRO ALA GLY ARG ALA SEQRES 5 A 512 LYS THR THR SER PHE VAL LEU VAL ASP PRO LEU PRO SER SEQRES 6 A 512 GLY TYR GLN PHE ASN LEU GLU ALA THR LYS ALA ALA SER SEQRES 7 A 512 PRO GLY PHE ASP VAL SER TYR ASP LYS ALA THR ASN THR SEQRES 8 A 512 VAL THR PHE LYS ALA THR ALA ALA THR LEU ALA THR PHE SEQRES 9 A 512 ASN ALA ASP LEU THR LYS SER VAL ALA THR ILE TYR PRO SEQRES 10 A 512 THR VAL VAL GLY GLN VAL LEU ASN ASP GLY ALA THR TYR SEQRES 11 A 512 LYS ASN ASN PHE THR LEU THR VAL ASN ASP ALA TYR GLY SEQRES 12 A 512 ILE LYS SER ASN VAL VAL ARG VAL THR THR PRO GLY LYS SEQRES 13 A 512 PRO ASN ASP PRO ASP ASN PRO ASN ASN ASN TYR ILE LYS SEQRES 14 A 512 PRO THR LYS VAL ASN LYS ASN GLU ASN GLY VAL VAL ILE SEQRES 15 A 512 ASP GLY LYS THR VAL LEU ALA GLY SER THR ASN TYR TYR SEQRES 16 A 512 GLU LEU THR TRP ASP LEU ASP GLN TYR LYS ASN ASP ARG SEQRES 17 A 512 SER SER ALA ASP THR ILE GLN LYS GLY PHE TYR TYR VAL SEQRES 18 A 512 ASP ASP TYR PRO GLU GLU ALA LEU GLU LEU ARG GLN ASP SEQRES 19 A 512 LEU VAL LYS ILE THR ASP ALA ASN GLY ASN LYS VAL THR SEQRES 20 A 512 GLY VAL SER VAL ASP HIS TYR THR SER LEU GLU ALA ALA SEQRES 21 A 512 PRO GLN GLU VAL ARG ASP VAL LEU SER LYS ALA GLY ILE SEQRES 22 A 512 ARG PRO LYS GLY ALA PHE GLN ILE PHE ARG ALA ASP ASN SEQRES 23 A 512 PRO ARG GLU PHE TYR ASP THR TYR VAL LYS ASN GLY ILE SEQRES 24 A 512 ASP LEU LYS ILE VAL SER PRO MET VAL VAL LYS LYS GLN SEQRES 25 A 512 MET GLY GLN THR GLY GLY SER TYR GLU ASN GLN ALA TYR SEQRES 26 A 512 GLN ILE ASP PHE GLY ASN GLY TYR ALA SER ASN ILE VAL SEQRES 27 A 512 ILE ASN ASN VAL PRO LYS ILE ASN PRO LYS LYS ASP VAL SEQRES 28 A 512 THR LEU THR LEU ASP PRO ALA ASP THR ASN ASN VAL ASP SEQRES 29 A 512 GLY GLN THR ILE PRO LEU ASN THR VAL PHE ASN TYR ARG SEQRES 30 A 512 LEU ILE GLY GLY ILE ILE PRO ALA ASP HIS SER GLU GLU SEQRES 31 A 512 LEU PHE GLU TYR ASN PHE TYR ASP ASP TYR ASP GLN THR SEQRES 32 A 512 GLY ASP ARG TYR THR GLY GLN TYR LYS VAL PHE ALA LYS SEQRES 33 A 512 VAL ASP ILE THR LEU LYS ASP GLY SER VAL ILE LYS SER SEQRES 34 A 512 GLY THR ASP LEU THR GLN HIS THR THR ALA GLU VAL ASP SEQRES 35 A 512 ALA THR LYS GLY ALA LEU THR ILE LYS PHE LYS GLU ASP SEQRES 36 A 512 PHE LEU ARG SER VAL SER ILE ASP SER ALA PHE GLN ALA SEQRES 37 A 512 GLU SER TYR ILE GLN MET LYS ARG ILE ALA ALA GLY THR SEQRES 38 A 512 PHE GLU ASN THR TYR VAL ASN THR VAL ASN LYS VAL ALA SEQRES 39 A 512 TYR ALA SER GLU ASN LEU TYR PHE GLN GLY LEU GLU HIS SEQRES 40 A 512 HIS HIS HIS HIS HIS HET CA A1301 1 HET CA A1302 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) FORMUL 4 HOH *73(H2 O) HELIX 1 AA1 ASN A 814 SER A 822 1 9 HELIX 2 AA2 THR A 841 ALA A 850 1 10 HELIX 3 AA3 LEU A 945 LYS A 949 5 5 HELIX 4 AA4 SER A 954 GLN A 959 1 6 HELIX 5 AA5 GLN A 977 VAL A 980 5 4 HELIX 6 AA6 PRO A 1005 GLY A 1016 1 12 HELIX 7 AA7 ASN A 1030 TYR A 1038 1 9 HELIX 8 AA8 LYS A 1055 GLY A 1061 1 7 HELIX 9 AA9 LEU A 1177 GLN A 1179 5 3 HELIX 10 AB1 LYS A 1197 SER A 1203 1 7 SHEET 1 AA1 4 VAL A 759 LYS A 764 0 SHEET 2 AA1 4 VAL A 781 THR A 788 -1 O LYS A 783 N LYS A 764 SHEET 3 AA1 4 THR A 862 VAL A 867 -1 O VAL A 863 N PHE A 784 SHEET 4 AA1 4 TYR A 811 PHE A 813 -1 N GLN A 812 O GLN A 866 SHEET 1 AA2 5 PHE A 825 ASP A 830 0 SHEET 2 AA2 5 THR A 835 ALA A 840 -1 O LYS A 839 N ASP A 826 SHEET 3 AA2 5 PHE A 801 PRO A 806 -1 N ASP A 805 O VAL A 836 SHEET 4 AA2 5 THR A 879 VAL A 882 -1 O THR A 879 N VAL A 804 SHEET 5 AA2 5 GLY A 887 LYS A 889 -1 O ILE A 888 N LEU A 880 SHEET 1 AA3 2 THR A 873 ASN A 876 0 SHEET 2 AA3 2 VAL A 893 THR A 896 -1 O VAL A 895 N TYR A 874 SHEET 1 AA4 4 THR A 915 VAL A 917 0 SHEET 2 AA4 4 THR A 936 TRP A 943 -1 O THR A 942 N THR A 915 SHEET 3 AA4 4 LEU A1045 VAL A1053 -1 O ILE A1047 N LEU A 941 SHEET 4 AA4 4 LEU A 973 LEU A 975 -1 N GLU A 974 O VAL A1052 SHEET 1 AA5 4 THR A 915 VAL A 917 0 SHEET 2 AA5 4 THR A 936 TRP A 943 -1 O THR A 942 N THR A 915 SHEET 3 AA5 4 LEU A1045 VAL A1053 -1 O ILE A1047 N LEU A 941 SHEET 4 AA5 4 LYS A 981 ASP A 984 -1 N THR A 983 O LYS A1046 SHEET 1 AA6 5 VAL A 993 TYR A 998 0 SHEET 2 AA6 5 PHE A1023 ALA A1028 -1 O ILE A1025 N ASP A 996 SHEET 3 AA6 5 PHE A 962 ASP A 967 -1 N ASP A 966 O GLN A1024 SHEET 4 AA6 5 GLY A1062 ASP A1072 -1 O TYR A1069 N VAL A 965 SHEET 5 AA6 5 ASN A1075 ALA A1078 -1 O ASN A1075 N ASP A1072 SHEET 1 AA7 5 VAL A 993 TYR A 998 0 SHEET 2 AA7 5 PHE A1023 ALA A1028 -1 O ILE A1025 N ASP A 996 SHEET 3 AA7 5 PHE A 962 ASP A 967 -1 N ASP A 966 O GLN A1024 SHEET 4 AA7 5 GLY A1062 ASP A1072 -1 O TYR A1069 N VAL A 965 SHEET 5 AA7 5 VAL A1082 VAL A1086 -1 O VAL A1082 N ASN A1066 SHEET 1 AA8 5 ASP A1149 ALA A1159 0 SHEET 2 AA8 5 ALA A1212 ARG A1220 -1 O TYR A1215 N LYS A1156 SHEET 3 AA8 5 VAL A1117 ILE A1123 -1 N LEU A1122 O SER A1214 SHEET 4 AA8 5 LYS A1092 THR A1096 -1 N LYS A1092 O ILE A1123 SHEET 5 AA8 5 GLU A1242 ASN A1243 1 O GLU A1242 N LYS A1093 SHEET 1 AA9 5 THR A1181 ASP A1186 0 SHEET 2 AA9 5 ALA A1191 PHE A1196 -1 O ALA A1191 N ASP A1186 SHEET 3 AA9 5 TYR A1138 TYR A1144 -1 N ASP A1142 O LEU A1192 SHEET 4 AA9 5 ASN A1228 VAL A1234 -1 O VAL A1231 N TYR A1141 SHEET 5 AA9 5 VAL A1237 ALA A1240 -1 O TYR A1239 N ASN A1232 SHEET 1 AB1 2 ILE A1163 THR A1164 0 SHEET 2 AB1 2 VAL A1170 ILE A1171 -1 O ILE A1171 N ILE A1163 LINK NZ LYS A 761 CG ASN A 876 1555 1555 1.27 LINK NZ LYS A 916 CG ASN A1066 1555 1555 1.29 LINK OD1BASN A 910 CA CA A1301 1555 1555 2.48 LINK O TYR A 911 CA CA A1301 1555 1555 2.47 LINK OD1 ASP A 944 CA CA A1301 1555 1555 2.77 LINK OD2 ASP A 944 CA CA A1301 1555 1555 2.41 LINK OD1 ASP A 946 CA CA A1301 1555 1555 2.69 LINK OE1 GLN A 947 CA CA A1301 1555 1555 2.70 LINK OD1 ASP A 967 CA CA A1302 1555 1555 2.66 LINK O TYR A 968 CA CA A1302 1555 1555 2.19 LINK OE1 GLU A 970 CA CA A1302 1555 1555 3.08 LINK O LYS A1020 CA CA A1302 1555 1555 2.44 LINK O ALA A1022 CA CA A1302 1555 1555 2.59 SITE 1 AC1 5 ASN A 910 TYR A 911 ASP A 944 ASP A 946 SITE 2 AC1 5 GLN A 947 SITE 1 AC2 5 ASP A 967 TYR A 968 GLU A 970 LYS A1020 SITE 2 AC2 5 ALA A1022 CRYST1 99.589 99.589 514.887 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010041 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001942 0.00000