HEADER TRANSCRIPTION/TRANSCRIPTION INHIBITOR 15-JUL-18 6E3T TITLE CRYSTAL STRUCTURE OF THE HETERODIMERIC HIF-2 COMPLEX WITH ANTAGONIST TITLE 2 T1001 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARNT PROTEIN,DIOXIN RECEPTOR,NUCLEAR TRANSLOCATOR,HYPOXIA- COMPND 5 INDUCIBLE FACTOR 1-BETA,HIF1-BETA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ENDOTHELIAL PAS DOMAIN-CONTAINING PROTEIN 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: EPAS-1,HIF-1-ALPHA-LIKE FACTOR,MHLF,HIF-RELATED FACTOR,HRF, COMPND 11 HYPOXIA-INDUCIBLE FACTOR 2-ALPHA,HIF2-ALPHA; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ARNT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMKH; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: EPAS1, HIF2A; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PSJ2 KEYWDS COMPLEX, ANTAGONIST, TRANSCRIPTION FACTOR, TRANSCRIPTION- KEYWDS 2 TRANSCRIPTION INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.WU,X.SU,J.LU,S.LI,B.HOOD,S.VASILE,N.POTLURI,X.DIAO,Y.KIM, AUTHOR 2 S.KHORASANIZADEH,F.RASTINEJAD REVDAT 5 11-OCT-23 6E3T 1 REMARK REVDAT 4 18-DEC-19 6E3T 1 REMARK REVDAT 3 03-APR-19 6E3T 1 JRNL REVDAT 2 13-MAR-19 6E3T 1 JRNL REVDAT 1 13-FEB-19 6E3T 0 JRNL AUTH D.WU,X.SU,J.LU,S.LI,B.L.HOOD,S.VASILE,N.POTLURI,X.DIAO, JRNL AUTH 2 Y.KIM,S.KHORASANIZADEH,F.RASTINEJAD JRNL TITL BIDIRECTIONAL MODULATION OF HIF-2 ACTIVITY THROUGH CHEMICAL JRNL TITL 2 LIGANDS. JRNL REF NAT. CHEM. BIOL. V. 15 367 2019 JRNL REFN ESSN 1552-4469 JRNL PMID 30804532 JRNL DOI 10.1038/S41589-019-0234-5 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2467: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 13415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7970 - 5.1276 0.94 2571 131 0.2381 0.2904 REMARK 3 2 5.1276 - 4.0710 0.98 2587 146 0.2194 0.2765 REMARK 3 3 4.0710 - 3.5567 0.98 2636 131 0.2634 0.3412 REMARK 3 4 3.5567 - 3.2317 0.97 2608 112 0.2834 0.3809 REMARK 3 5 3.2317 - 3.0001 0.89 2376 117 0.3105 0.3888 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4362 REMARK 3 ANGLE : 1.586 5882 REMARK 3 CHIRALITY : 0.080 669 REMARK 3 PLANARITY : 0.009 735 REMARK 3 DIHEDRAL : 6.412 2616 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -15.7549 21.1339 -7.5814 REMARK 3 T TENSOR REMARK 3 T11: 0.4555 T22: 0.7300 REMARK 3 T33: 0.6935 T12: -0.0150 REMARK 3 T13: -0.0035 T23: 0.0483 REMARK 3 L TENSOR REMARK 3 L11: 1.3672 L22: 1.8698 REMARK 3 L33: 3.7178 L12: -0.0187 REMARK 3 L13: 0.3281 L23: 0.6761 REMARK 3 S TENSOR REMARK 3 S11: -0.0973 S12: -0.4097 S13: 0.0471 REMARK 3 S21: -0.0474 S22: -0.1719 S23: 0.1697 REMARK 3 S31: -0.2152 S32: -0.7866 S33: 0.2495 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E3T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14016 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.960 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.71400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZP4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% TACSIMATE, PH 7.0, 6% PEG3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.99050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 81 REMARK 465 SER A 82 REMARK 465 SER A 83 REMARK 465 ALA A 84 REMARK 465 ASP A 85 REMARK 465 LYS A 86 REMARK 465 GLU A 87 REMARK 465 ARG A 88 REMARK 465 LEU A 89 REMARK 465 ALA A 90 REMARK 465 ARG A 91 REMARK 465 GLU A 92 REMARK 465 ASN A 93 REMARK 465 HIS A 94 REMARK 465 SER A 95 REMARK 465 GLU A 96 REMARK 465 ILE A 97 REMARK 465 GLU A 98 REMARK 465 ARG A 99 REMARK 465 ARG A 100 REMARK 465 ARG A 101 REMARK 465 ARG A 102 REMARK 465 ARG A 143 REMARK 465 GLY A 144 REMARK 465 THR A 145 REMARK 465 GLY A 146 REMARK 465 ASN A 147 REMARK 465 THR A 148 REMARK 465 SER A 149 REMARK 465 THR A 150 REMARK 465 ASP A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 TYR A 154 REMARK 465 LYS A 155 REMARK 465 PRO A 156 REMARK 465 SER A 157 REMARK 465 PHE A 158 REMARK 465 LEU A 159 REMARK 465 THR A 160 REMARK 465 ASP A 161 REMARK 465 GLN A 162 REMARK 465 PHE A 205 REMARK 465 GLY A 206 REMARK 465 SER A 226 REMARK 465 THR A 227 REMARK 465 SER A 228 REMARK 465 GLU A 229 REMARK 465 ASN A 230 REMARK 465 ALA A 231 REMARK 465 LEU A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 ARG A 235 REMARK 465 VAL A 236 REMARK 465 LEU A 237 REMARK 465 ASP A 238 REMARK 465 LEU A 239 REMARK 465 LYS A 240 REMARK 465 THR A 241 REMARK 465 GLY A 242 REMARK 465 THR A 243 REMARK 465 VAL A 244 REMARK 465 LYS A 245 REMARK 465 LYS A 246 REMARK 465 GLU A 247 REMARK 465 GLY A 248 REMARK 465 GLN A 249 REMARK 465 GLN A 250 REMARK 465 SER A 251 REMARK 465 SER A 252 REMARK 465 MET A 253 REMARK 465 ARG A 254 REMARK 465 MET A 255 REMARK 465 CYS A 256 REMARK 465 MET A 257 REMARK 465 GLY A 258 REMARK 465 SER A 272 REMARK 465 SER A 273 REMARK 465 VAL A 274 REMARK 465 ASP A 275 REMARK 465 PRO A 276 REMARK 465 VAL A 277 REMARK 465 SER A 278 REMARK 465 MET A 279 REMARK 465 ASN A 280 REMARK 465 ARG A 281 REMARK 465 LEU A 282 REMARK 465 SER A 283 REMARK 465 PHE A 284 REMARK 465 LEU A 285 REMARK 465 ARG A 286 REMARK 465 ASN A 287 REMARK 465 ARG A 288 REMARK 465 CYS A 289 REMARK 465 ARG A 290 REMARK 465 ASN A 291 REMARK 465 GLY A 292 REMARK 465 LEU A 293 REMARK 465 GLY A 294 REMARK 465 SER A 295 REMARK 465 VAL A 296 REMARK 465 LYS A 297 REMARK 465 GLU A 298 REMARK 465 GLY A 299 REMARK 465 GLU A 300 REMARK 465 PRO A 316 REMARK 465 PRO A 317 REMARK 465 ALA A 318 REMARK 465 GLY A 319 REMARK 465 VAL A 320 REMARK 465 SER A 321 REMARK 465 LEU A 322 REMARK 465 PRO A 323 REMARK 465 ASP A 324 REMARK 465 ASP A 325 REMARK 465 ASP A 326 REMARK 465 PRO A 327 REMARK 465 GLU A 328 REMARK 465 ALA A 329 REMARK 465 GLY A 330 REMARK 465 GLN A 331 REMARK 465 GLY A 332 REMARK 465 SER A 333 REMARK 465 SER A 347 REMARK 465 SER A 348 REMARK 465 PRO A 349 REMARK 465 ASN A 350 REMARK 465 CYS A 351 REMARK 465 THR A 352 REMARK 465 ASP A 353 REMARK 465 MET A 354 REMARK 465 SER A 355 REMARK 465 ASN A 356 REMARK 465 ILE A 357 REMARK 465 CYS A 358 REMARK 465 GLN A 359 REMARK 465 PRO A 360 REMARK 465 VAL A 464 REMARK 465 MET B 2 REMARK 465 ALA B 3 REMARK 465 ASP B 4 REMARK 465 LYS B 5 REMARK 465 GLU B 6 REMARK 465 LYS B 7 REMARK 465 LYS B 8 REMARK 465 ARG B 9 REMARK 465 SER B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLU B 13 REMARK 465 LEU B 14 REMARK 465 ARG B 15 REMARK 465 LYS B 16 REMARK 465 GLU B 17 REMARK 465 LYS B 18 REMARK 465 SER B 19 REMARK 465 ARG B 20 REMARK 465 ASP B 21 REMARK 465 ALA B 22 REMARK 465 ALA B 23 REMARK 465 ARG B 24 REMARK 465 CYS B 25 REMARK 465 ARG B 26 REMARK 465 ARG B 27 REMARK 465 SER B 28 REMARK 465 LYS B 29 REMARK 465 PRO B 42 REMARK 465 LEU B 43 REMARK 465 SER B 75 REMARK 465 GLU B 76 REMARK 465 ASN B 77 REMARK 465 GLU B 78 REMARK 465 SER B 79 REMARK 465 GLU B 80 REMARK 465 ALA B 81 REMARK 465 GLU B 82 REMARK 465 ALA B 83 REMARK 465 ASP B 84 REMARK 465 GLN B 85 REMARK 465 GLN B 86 REMARK 465 MET B 87 REMARK 465 LYS B 150 REMARK 465 ASN B 151 REMARK 465 GLY B 152 REMARK 465 SER B 153 REMARK 465 GLY B 154 REMARK 465 PHE B 155 REMARK 465 GLY B 156 REMARK 465 LYS B 157 REMARK 465 LYS B 158 REMARK 465 SER B 159 REMARK 465 LYS B 160 REMARK 465 ASP B 161 REMARK 465 VAL B 162 REMARK 465 ARG B 179 REMARK 465 GLY B 180 REMARK 465 TYR B 202 REMARK 465 ASN B 203 REMARK 465 ASN B 204 REMARK 465 CYS B 205 REMARK 465 PRO B 206 REMARK 465 PRO B 207 REMARK 465 HIS B 208 REMARK 465 SER B 209 REMARK 465 SER B 210 REMARK 465 LEU B 211 REMARK 465 CYS B 212 REMARK 465 GLY B 213 REMARK 465 SER B 214 REMARK 465 LYS B 215 REMARK 465 GLU B 216 REMARK 465 PRO B 217 REMARK 465 LEU B 218 REMARK 465 GLN B 358 REMARK 465 THR B 359 REMARK 465 GLU B 360 REMARK 465 SER B 361 REMARK 465 LEU B 362 REMARK 465 GLU B 363 REMARK 465 HIS B 364 REMARK 465 HIS B 365 REMARK 465 HIS B 366 REMARK 465 HIS B 367 REMARK 465 HIS B 368 REMARK 465 HIS B 369 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 126 -169.81 -75.52 REMARK 500 PHE A 263 -158.63 -161.03 REMARK 500 ARG A 434 2.36 81.18 REMARK 500 TYR A 450 -62.21 -98.27 REMARK 500 ALA B 94 23.72 -76.97 REMARK 500 GLU B 96 43.02 -79.95 REMARK 500 PHE B 134 15.26 -148.49 REMARK 500 MET B 172 -155.20 -105.48 REMARK 500 SER B 249 171.41 -58.46 REMARK 500 MET B 252 11.17 87.50 REMARK 500 TYR B 256 143.56 -175.67 REMARK 500 ILE B 261 -34.05 -36.25 REMARK 500 HIS B 313 50.36 -119.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HO7 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6E3S RELATED DB: PDB REMARK 900 6E3S CONTAINS THE SAME PROTEINS COMPLEXED WITH PT2385 DBREF 6E3T A 82 464 UNP P53762 ARNT_MOUSE 82 464 DBREF 6E3T B 3 362 UNP P97481 EPAS1_MOUSE 3 362 SEQADV 6E3T MET A 81 UNP P53762 INITIATING METHIONINE SEQADV 6E3T MET B 2 UNP P97481 INITIATING METHIONINE SEQADV 6E3T GLU B 363 UNP P97481 EXPRESSION TAG SEQADV 6E3T HIS B 364 UNP P97481 EXPRESSION TAG SEQADV 6E3T HIS B 365 UNP P97481 EXPRESSION TAG SEQADV 6E3T HIS B 366 UNP P97481 EXPRESSION TAG SEQADV 6E3T HIS B 367 UNP P97481 EXPRESSION TAG SEQADV 6E3T HIS B 368 UNP P97481 EXPRESSION TAG SEQADV 6E3T HIS B 369 UNP P97481 EXPRESSION TAG SEQRES 1 A 384 MET SER SER ALA ASP LYS GLU ARG LEU ALA ARG GLU ASN SEQRES 2 A 384 HIS SER GLU ILE GLU ARG ARG ARG ARG ASN LYS MET THR SEQRES 3 A 384 ALA TYR ILE THR GLU LEU SER ASP MET VAL PRO THR CYS SEQRES 4 A 384 SER ALA LEU ALA ARG LYS PRO ASP LYS LEU THR ILE LEU SEQRES 5 A 384 ARG MET ALA VAL SER HIS MET LYS SER LEU ARG GLY THR SEQRES 6 A 384 GLY ASN THR SER THR ASP GLY SER TYR LYS PRO SER PHE SEQRES 7 A 384 LEU THR ASP GLN GLU LEU LYS HIS LEU ILE LEU GLU ALA SEQRES 8 A 384 ALA ASP GLY PHE LEU PHE ILE VAL SER CYS GLU THR GLY SEQRES 9 A 384 ARG VAL VAL TYR VAL SER ASP SER VAL THR PRO VAL LEU SEQRES 10 A 384 ASN GLN PRO GLN SER GLU TRP PHE GLY SER THR LEU TYR SEQRES 11 A 384 ASP GLN VAL HIS PRO ASP ASP VAL ASP LYS LEU ARG GLU SEQRES 12 A 384 GLN LEU SER THR SER GLU ASN ALA LEU THR GLY ARG VAL SEQRES 13 A 384 LEU ASP LEU LYS THR GLY THR VAL LYS LYS GLU GLY GLN SEQRES 14 A 384 GLN SER SER MET ARG MET CYS MET GLY SER ARG ARG SER SEQRES 15 A 384 PHE ILE CYS ARG MET ARG CYS GLY THR SER SER VAL ASP SEQRES 16 A 384 PRO VAL SER MET ASN ARG LEU SER PHE LEU ARG ASN ARG SEQRES 17 A 384 CYS ARG ASN GLY LEU GLY SER VAL LYS GLU GLY GLU PRO SEQRES 18 A 384 HIS PHE VAL VAL VAL HIS CYS THR GLY TYR ILE LYS ALA SEQRES 19 A 384 TRP PRO PRO ALA GLY VAL SER LEU PRO ASP ASP ASP PRO SEQRES 20 A 384 GLU ALA GLY GLN GLY SER LYS PHE CYS LEU VAL ALA ILE SEQRES 21 A 384 GLY ARG LEU GLN VAL THR SER SER PRO ASN CYS THR ASP SEQRES 22 A 384 MET SER ASN ILE CYS GLN PRO THR GLU PHE ILE SER ARG SEQRES 23 A 384 HIS ASN ILE GLU GLY ILE PHE THR PHE VAL ASP HIS ARG SEQRES 24 A 384 CYS VAL ALA THR VAL GLY TYR GLN PRO GLN GLU LEU LEU SEQRES 25 A 384 GLY LYS ASN ILE VAL GLU PHE CYS HIS PRO GLU ASP GLN SEQRES 26 A 384 GLN LEU LEU ARG ASP SER PHE GLN GLN VAL VAL LYS LEU SEQRES 27 A 384 LYS GLY GLN VAL LEU SER VAL MET PHE ARG PHE ARG SER SEQRES 28 A 384 LYS THR ARG GLU TRP LEU TRP MET ARG THR SER SER PHE SEQRES 29 A 384 THR PHE GLN ASN PRO TYR SER ASP GLU ILE GLU TYR ILE SEQRES 30 A 384 ILE CYS THR ASN THR ASN VAL SEQRES 1 B 368 MET ALA ASP LYS GLU LYS LYS ARG SER SER SER GLU LEU SEQRES 2 B 368 ARG LYS GLU LYS SER ARG ASP ALA ALA ARG CYS ARG ARG SEQRES 3 B 368 SER LYS GLU THR GLU VAL PHE TYR GLU LEU ALA HIS GLU SEQRES 4 B 368 LEU PRO LEU PRO HIS SER VAL SER SER HIS LEU ASP LYS SEQRES 5 B 368 ALA SER ILE MET ARG LEU ALA ILE SER PHE LEU ARG THR SEQRES 6 B 368 HIS LYS LEU LEU SER SER VAL CYS SER GLU ASN GLU SER SEQRES 7 B 368 GLU ALA GLU ALA ASP GLN GLN MET ASP ASN LEU TYR LEU SEQRES 8 B 368 LYS ALA LEU GLU GLY PHE ILE ALA VAL VAL THR GLN ASP SEQRES 9 B 368 GLY ASP MET ILE PHE LEU SER GLU ASN ILE SER LYS PHE SEQRES 10 B 368 MET GLY LEU THR GLN VAL GLU LEU THR GLY HIS SER ILE SEQRES 11 B 368 PHE ASP PHE THR HIS PRO CYS ASP HIS GLU GLU ILE ARG SEQRES 12 B 368 GLU ASN LEU THR LEU LYS ASN GLY SER GLY PHE GLY LYS SEQRES 13 B 368 LYS SER LYS ASP VAL SER THR GLU ARG ASP PHE PHE MET SEQRES 14 B 368 ARG MET LYS CYS THR VAL THR ASN ARG GLY ARG THR VAL SEQRES 15 B 368 ASN LEU LYS SER ALA THR TRP LYS VAL LEU HIS CYS THR SEQRES 16 B 368 GLY GLN VAL ARG VAL TYR ASN ASN CYS PRO PRO HIS SER SEQRES 17 B 368 SER LEU CYS GLY SER LYS GLU PRO LEU LEU SER CYS LEU SEQRES 18 B 368 ILE ILE MET CYS GLU PRO ILE GLN HIS PRO SER HIS MET SEQRES 19 B 368 ASP ILE PRO LEU ASP SER LYS THR PHE LEU SER ARG HIS SEQRES 20 B 368 SER MET ASP MET LYS PHE THR TYR CYS ASP ASP ARG ILE SEQRES 21 B 368 LEU GLU LEU ILE GLY TYR HIS PRO GLU GLU LEU LEU GLY SEQRES 22 B 368 ARG SER ALA TYR GLU PHE TYR HIS ALA LEU ASP SER GLU SEQRES 23 B 368 ASN MET THR LYS SER HIS GLN ASN LEU CYS THR LYS GLY SEQRES 24 B 368 GLN VAL VAL SER GLY GLN TYR ARG MET LEU ALA LYS HIS SEQRES 25 B 368 GLY GLY TYR VAL TRP LEU GLU THR GLN GLY THR VAL ILE SEQRES 26 B 368 TYR ASN PRO ARG ASN LEU GLN PRO GLN CYS ILE MET CYS SEQRES 27 B 368 VAL ASN TYR VAL LEU SER GLU ILE GLU LYS ASN ASP VAL SEQRES 28 B 368 VAL PHE SER MET ASP GLN THR GLU SER LEU GLU HIS HIS SEQRES 29 B 368 HIS HIS HIS HIS HET HO7 B 401 15 HETNAM HO7 (6S)-6-(4-BROMOPHENYL)-2,3,5,6-TETRAHYDROIMIDAZO[2,1- HETNAM 2 HO7 B][1,3]THIAZOLE FORMUL 3 HO7 C11 H11 BR N2 S HELIX 1 AA1 ASN A 103 VAL A 116 1 14 HELIX 2 AA2 VAL A 116 ALA A 121 1 6 HELIX 3 AA3 ASP A 127 LEU A 142 1 16 HELIX 4 AA4 LEU A 164 ASP A 173 1 10 HELIX 5 AA5 SER A 192 ASN A 198 1 7 HELIX 6 AA6 THR A 208 VAL A 213 1 6 HELIX 7 AA7 HIS A 214 ASP A 216 5 3 HELIX 8 AA8 ASP A 217 LEU A 225 1 9 HELIX 9 AA9 HIS A 378 VAL A 384 1 7 HELIX 10 AB1 GLN A 387 LEU A 392 1 6 HELIX 11 AB2 HIS A 401 GLU A 403 5 3 HELIX 12 AB3 ASP A 404 LEU A 418 1 15 HELIX 13 AB4 THR B 31 HIS B 39 1 9 HELIX 14 AB5 HIS B 45 SER B 49 1 5 HELIX 15 AB6 ASP B 52 CYS B 74 1 23 HELIX 16 AB7 ASN B 89 ALA B 94 1 6 HELIX 17 AB8 ASN B 114 GLY B 120 1 7 HELIX 18 AB9 THR B 122 THR B 127 1 6 HELIX 19 AC1 ILE B 131 THR B 135 5 5 HELIX 20 AC2 HIS B 136 THR B 148 1 13 HELIX 21 AC3 ASN B 184 ALA B 188 5 5 HELIX 22 AC4 ARG B 260 ILE B 265 1 6 HELIX 23 AC5 HIS B 268 LEU B 273 1 6 HELIX 24 AC6 TYR B 278 PHE B 280 5 3 HELIX 25 AC7 HIS B 282 LEU B 284 5 3 HELIX 26 AC8 ASP B 285 GLY B 300 1 16 SHEET 1 AA1 5 VAL A 186 VAL A 189 0 SHEET 2 AA1 5 PHE A 175 SER A 180 -1 N ILE A 178 O TYR A 188 SHEET 3 AA1 5 CYS A 336 ARG A 342 -1 O LEU A 337 N VAL A 179 SHEET 4 AA1 5 PHE A 303 LYS A 313 -1 N THR A 309 O ILE A 340 SHEET 5 AA1 5 ARG A 260 ARG A 268 -1 N MET A 267 O VAL A 304 SHEET 1 AA2 5 PHE A 373 VAL A 376 0 SHEET 2 AA2 5 GLU A 362 HIS A 367 -1 N ARG A 366 O THR A 374 SHEET 3 AA2 5 ILE A 454 THR A 462 -1 O CYS A 459 N SER A 365 SHEET 4 AA2 5 TRP A 436 GLN A 447 -1 N ARG A 440 O THR A 462 SHEET 5 AA2 5 LEU A 423 ARG A 430 -1 N VAL A 425 O THR A 441 SHEET 1 AA3 5 MET B 108 LEU B 111 0 SHEET 2 AA3 5 PHE B 98 THR B 103 -1 N VAL B 101 O PHE B 110 SHEET 3 AA3 5 CYS B 221 PRO B 228 -1 O CYS B 226 N PHE B 98 SHEET 4 AA3 5 THR B 189 ARG B 200 -1 N GLN B 198 O ILE B 223 SHEET 5 AA3 5 GLU B 165 CYS B 174 -1 N PHE B 168 O CYS B 195 SHEET 1 AA4 6 ARG B 275 SER B 276 0 SHEET 2 AA4 6 LYS B 253 CYS B 257 -1 N PHE B 254 O ARG B 275 SHEET 3 AA4 6 THR B 243 HIS B 248 -1 N ARG B 247 O TYR B 256 SHEET 4 AA4 6 GLN B 333 VAL B 343 -1 O CYS B 339 N SER B 246 SHEET 5 AA4 6 TYR B 316 ASN B 328 -1 N GLU B 320 O TYR B 342 SHEET 6 AA4 6 GLN B 301 VAL B 303 -1 N VAL B 302 O GLY B 323 SHEET 1 AA5 6 ARG B 275 SER B 276 0 SHEET 2 AA5 6 LYS B 253 CYS B 257 -1 N PHE B 254 O ARG B 275 SHEET 3 AA5 6 THR B 243 HIS B 248 -1 N ARG B 247 O TYR B 256 SHEET 4 AA5 6 GLN B 333 VAL B 343 -1 O CYS B 339 N SER B 246 SHEET 5 AA5 6 TYR B 316 ASN B 328 -1 N GLU B 320 O TYR B 342 SHEET 6 AA5 6 TYR B 307 LEU B 310 -1 N TYR B 307 O LEU B 319 SITE 1 AC1 11 PHE B 244 HIS B 248 ALA B 277 TYR B 281 SITE 2 AC1 11 VAL B 302 TYR B 307 MET B 309 LEU B 319 SITE 3 AC1 11 THR B 321 CYS B 339 ASN B 341 CRYST1 49.032 97.981 77.427 90.00 107.10 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020395 0.000000 0.006273 0.00000 SCALE2 0.000000 0.010206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013513 0.00000