HEADER ONCOPROTEIN 17-JUL-18 6E4H TITLE SOLUTION NMR STRUCTURE OF THE COLIED-COIL PALB2 HOMODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARTNER AND LOCALIZER OF BRCA2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-60; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PALB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIPARALLEL COILED COIL, HOMOLOGOUS RECOMBINATION, DNA DAMAGE KEYWDS 2 REPAIR, ONCOPROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.SONG,M.LI,G.LIU,G.V.T.SWAPNA,B.XIA,S.F.BUNTING,G.T.MONTELIONE REVDAT 6 15-MAY-24 6E4H 1 REMARK REVDAT 5 14-JUN-23 6E4H 1 REMARK REVDAT 4 04-DEC-19 6E4H 1 REMARK REVDAT 3 05-DEC-18 6E4H 1 JRNL REVDAT 2 21-NOV-18 6E4H 1 JRNL REVDAT 1 17-OCT-18 6E4H 0 JRNL AUTH F.SONG,M.LI,G.LIU,G.V.T.SWAPNA,N.S.DAIGHAM,B.XIA, JRNL AUTH 2 G.T.MONTELIONE,S.F.BUNTING JRNL TITL ANTIPARALLEL COILED-COIL INTERACTIONS MEDIATE THE JRNL TITL 2 HOMODIMERIZATION OF THE DNA DAMAGE-REPAIR PROTEIN PALB2. JRNL REF BIOCHEMISTRY V. 57 6581 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 30289697 JRNL DOI 10.1021/ACS.BIOCHEM.8B00789 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MOLECULAR DYNAMICS REMARK 4 REMARK 4 6E4H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235588. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-100% 13C; U-100% 15N] REMARK 210 PALB2CC, 20 MM MES, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 10 % DSS, REMARK 210 0.02 % SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O; 1 V/V [U-100% 13C; U-100% REMARK 210 15N] PALB2CC, 2 V/V UNLABELED REMARK 210 PALB2CC, 20 MM MES, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 10 % DSS, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TROSY-HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D TROSY-HNCOCA; 3D REMARK 210 TROSY-HNCA; 3D TROSY-HNCOCACB; REMARK 210 3D TROSY-HNCACB; 3D TROSY- REMARK 210 HBHACONH; 3D HCCH-TOCSY; 3D CCH- REMARK 210 TOCSY; AROMATIC CCH-TOCSY; 3D 1H- REMARK 210 13C NOESY; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D SIMULTANEOUS 13C- REMARK 210 AROMATIC,13C-ALIPHATIC,15N REMARK 210 EDITED 1H-1H NOESY; X-FILTERED REMARK 210 NOESY (PULSE SEQUENCE: REMARK 210 NOESYHSQCGPWGX13D) REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, TOPSPIN, REMARK 210 SPARKY, AUTOASSIGN, PINE, CYANA, REMARK 210 AVS, TALOS, PSVS, XEASY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 63 REMARK 465 HIS A 64 REMARK 465 HIS A 65 REMARK 465 HIS A 66 REMARK 465 HIS A 67 REMARK 465 HIS A 68 REMARK 465 HIS B 63 REMARK 465 HIS B 64 REMARK 465 HIS B 65 REMARK 465 HIS B 66 REMARK 465 HIS B 67 REMARK 465 HIS B 68 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 46 87.00 62.91 REMARK 500 1 GLU A 59 31.10 -153.76 REMARK 500 1 ASN B 46 79.42 63.67 REMARK 500 1 GLU B 52 87.24 -66.11 REMARK 500 1 ASP B 53 -169.55 -119.63 REMARK 500 1 GLU B 59 -58.88 -148.64 REMARK 500 1 ALA B 60 67.52 67.00 REMARK 500 2 SER A 5 -149.14 -89.96 REMARK 500 2 PRO A 8 -157.46 -84.85 REMARK 500 2 ASN A 46 68.38 63.68 REMARK 500 2 PRO B 8 -166.56 -75.89 REMARK 500 2 ASN B 46 80.46 67.24 REMARK 500 2 GLU B 59 -66.08 -93.40 REMARK 500 2 ALA B 60 17.90 57.83 REMARK 500 3 GLU A 42 19.27 57.82 REMARK 500 3 ASN A 46 80.15 44.00 REMARK 500 3 GLU A 59 -54.07 -135.28 REMARK 500 3 SER B 47 87.64 -68.88 REMARK 500 3 GLU B 59 -69.98 -150.43 REMARK 500 3 ALA B 60 72.61 54.63 REMARK 500 4 PRO A 8 -169.13 -76.00 REMARK 500 4 ASN A 46 -72.85 73.87 REMARK 500 4 SER A 47 96.91 -69.01 REMARK 500 4 GLU A 59 -58.68 -154.47 REMARK 500 4 LEU A 61 13.04 -147.33 REMARK 500 4 ASN B 46 -19.56 77.79 REMARK 500 4 PRO B 56 -168.80 -69.44 REMARK 500 4 GLU B 59 -76.45 -130.81 REMARK 500 4 ALA B 60 143.76 170.42 REMARK 500 4 LEU B 61 17.39 -146.44 REMARK 500 5 GLU A 2 -93.58 -140.81 REMARK 500 5 GLU A 3 139.57 -172.21 REMARK 500 5 SER A 5 -65.93 -91.61 REMARK 500 5 GLU A 42 -18.55 72.77 REMARK 500 5 ASN A 46 83.58 71.95 REMARK 500 5 SER A 47 -168.99 -63.52 REMARK 500 5 LYS A 48 90.75 -62.90 REMARK 500 5 GLU A 59 -72.58 -107.26 REMARK 500 5 LEU B 4 109.21 -55.79 REMARK 500 5 GLU B 42 -20.96 73.33 REMARK 500 5 ASN B 46 68.72 157.11 REMARK 500 5 PRO B 56 -173.88 -66.54 REMARK 500 5 GLU B 59 -28.84 -144.88 REMARK 500 6 LEU A 4 94.96 -65.82 REMARK 500 6 ASN A 46 -43.90 78.65 REMARK 500 6 SER A 47 -161.43 -75.33 REMARK 500 6 ASP A 53 -156.03 -81.09 REMARK 500 6 ASN B 46 -13.40 69.20 REMARK 500 6 GLU B 59 -65.66 -124.14 REMARK 500 7 GLU A 2 86.11 -56.04 REMARK 500 REMARK 500 THIS ENTRY HAS 157 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27534 RELATED DB: BMRB REMARK 900 RELATED ID: 30493 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF THE COLIED-COIL PALB2 HOMODIMER DBREF 6E4H A 1 60 UNP Q3U0P1 PALB2_MOUSE 1 60 DBREF 6E4H B 1 60 UNP Q3U0P1 PALB2_MOUSE 1 60 SEQADV 6E4H LEU A 61 UNP Q3U0P1 EXPRESSION TAG SEQADV 6E4H GLU A 62 UNP Q3U0P1 EXPRESSION TAG SEQADV 6E4H HIS A 63 UNP Q3U0P1 EXPRESSION TAG SEQADV 6E4H HIS A 64 UNP Q3U0P1 EXPRESSION TAG SEQADV 6E4H HIS A 65 UNP Q3U0P1 EXPRESSION TAG SEQADV 6E4H HIS A 66 UNP Q3U0P1 EXPRESSION TAG SEQADV 6E4H HIS A 67 UNP Q3U0P1 EXPRESSION TAG SEQADV 6E4H HIS A 68 UNP Q3U0P1 EXPRESSION TAG SEQADV 6E4H LEU B 61 UNP Q3U0P1 EXPRESSION TAG SEQADV 6E4H GLU B 62 UNP Q3U0P1 EXPRESSION TAG SEQADV 6E4H HIS B 63 UNP Q3U0P1 EXPRESSION TAG SEQADV 6E4H HIS B 64 UNP Q3U0P1 EXPRESSION TAG SEQADV 6E4H HIS B 65 UNP Q3U0P1 EXPRESSION TAG SEQADV 6E4H HIS B 66 UNP Q3U0P1 EXPRESSION TAG SEQADV 6E4H HIS B 67 UNP Q3U0P1 EXPRESSION TAG SEQADV 6E4H HIS B 68 UNP Q3U0P1 EXPRESSION TAG SEQRES 1 A 68 MET GLU GLU LEU SER GLY LYS PRO LEU SER TYR ALA GLU SEQRES 2 A 68 LYS GLU LYS LEU LYS GLU LYS LEU ALA PHE LEU LYS LYS SEQRES 3 A 68 GLU TYR SER ARG THR LEU ALA ARG LEU GLN ARG ALA LYS SEQRES 4 A 68 ARG ALA GLU LYS ALA LYS ASN SER LYS LYS ALA ILE GLU SEQRES 5 A 68 ASP GLY VAL PRO GLN PRO GLU ALA LEU GLU HIS HIS HIS SEQRES 6 A 68 HIS HIS HIS SEQRES 1 B 68 MET GLU GLU LEU SER GLY LYS PRO LEU SER TYR ALA GLU SEQRES 2 B 68 LYS GLU LYS LEU LYS GLU LYS LEU ALA PHE LEU LYS LYS SEQRES 3 B 68 GLU TYR SER ARG THR LEU ALA ARG LEU GLN ARG ALA LYS SEQRES 4 B 68 ARG ALA GLU LYS ALA LYS ASN SER LYS LYS ALA ILE GLU SEQRES 5 B 68 ASP GLY VAL PRO GLN PRO GLU ALA LEU GLU HIS HIS HIS SEQRES 6 B 68 HIS HIS HIS HELIX 1 AA1 SER A 10 ARG A 40 1 31 HELIX 2 AA2 SER B 10 ARG B 40 1 31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1