HEADER IMMUNE SYSTEM 18-JUL-18 6E4Y TITLE ANTI-PCSK9 FAB 6E2 BOUND TO THE N-TERMINAL PEPTIDE FROM PCSK9, TITLE 2 UNMODIFIED COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6E2 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 FRAGMENT: FAB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 6E2 LIGHT CHAIN; COMPND 8 CHAIN: L; COMPND 9 FRAGMENT: FAB; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9; COMPND 13 CHAIN: P; COMPND 14 FRAGMENT: UNP RESIDUES 32-53; COMPND 15 SYNONYM: NEURAL APOPTOSIS-REGULATED CONVERTASE 1, NARC-1, PROPROTEIN COMPND 16 CONVERTASE 9, PC9, SUBTILISIN/KEXIN-LIKE PROTEASE PC9; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: 64B4; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBR322; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: 64B4; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PBR322; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_COMMON: HUMAN; SOURCE 23 ORGANISM_TAXID: 9606 KEYWDS ANTIBODY, HYDROLASE, PCSK9, FAB COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.H.ULTSCH,D.K.KIRCHHOFER REVDAT 2 11-OCT-23 6E4Y 1 LINK REVDAT 1 10-APR-19 6E4Y 0 JRNL AUTH M.ULTSCH,W.LI,C.EIGENBROT,P.DI LELLO,M.T.LIPARI,S.GERHARDY, JRNL AUTH 2 A.P.AHYOUNG,J.QUINN,Y.FRANKE,Y.CHEN,M.KONG BELTRAN, JRNL AUTH 3 A.PETERSON,D.KIRCHHOFER JRNL TITL IDENTIFICATION OF A HELICAL SEGMENT WITHIN THE INTRINSICALLY JRNL TITL 2 DISORDERED REGION OF THE PCSK9 PRODOMAIN. JRNL REF J. MOL. BIOL. V. 431 885 2019 JRNL REFN ESSN 1089-8638 JRNL PMID 30653992 JRNL DOI 10.1016/J.JMB.2018.11.025 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 30008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 960 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.32 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.47 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2680 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2370 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2607 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.72 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3398 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.70710 REMARK 3 B22 (A**2) : 5.27650 REMARK 3 B33 (A**2) : 6.43050 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.320 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.228 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.196 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.224 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.196 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3477 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4726 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1167 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 76 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 503 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3477 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 450 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3747 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.53 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.99 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {H|1 - 114} REMARK 3 ORIGIN FOR THE GROUP (A): 109.7890 13.0998 99.2534 REMARK 3 T TENSOR REMARK 3 T11: -0.0628 T22: -0.1796 REMARK 3 T33: -0.0166 T12: -0.0464 REMARK 3 T13: -0.1332 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 2.3815 L22: 3.2399 REMARK 3 L33: 2.4050 L12: -0.7817 REMARK 3 L13: -0.3737 L23: 0.1562 REMARK 3 S TENSOR REMARK 3 S11: -0.0566 S12: -0.2097 S13: -0.0832 REMARK 3 S21: 0.5442 S22: 0.1189 S23: -0.3535 REMARK 3 S31: 0.0713 S32: 0.0608 S33: -0.0623 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {H|115 - 214} REMARK 3 ORIGIN FOR THE GROUP (A): 88.3288 9.0459 125.2040 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: -0.3040 REMARK 3 T33: -0.3040 T12: 0.0203 REMARK 3 T13: 0.1520 T23: -0.1201 REMARK 3 L TENSOR REMARK 3 L11: 4.8745 L22: 1.8195 REMARK 3 L33: 4.1639 L12: -0.5122 REMARK 3 L13: -2.7954 L23: -1.0239 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: -0.1898 S13: -0.0919 REMARK 3 S21: 0.5442 S22: -0.0260 S23: 0.5442 REMARK 3 S31: 0.5442 S32: -0.2550 S33: 0.0111 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {L|1 - 107} REMARK 3 ORIGIN FOR THE GROUP (A): 97.8588 32.1695 98.3219 REMARK 3 T TENSOR REMARK 3 T11: -0.0474 T22: -0.2139 REMARK 3 T33: -0.0369 T12: -0.0052 REMARK 3 T13: -0.0341 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 4.4241 L22: 3.8354 REMARK 3 L33: 1.9011 L12: -1.8529 REMARK 3 L13: 0.4401 L23: -0.0157 REMARK 3 S TENSOR REMARK 3 S11: -0.1077 S12: -0.3334 S13: 0.5442 REMARK 3 S21: 0.5053 S22: 0.0213 S23: -0.1947 REMARK 3 S31: -0.4009 S32: -0.1591 S33: 0.0864 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {L|108 - 213} REMARK 3 ORIGIN FOR THE GROUP (A): 87.9679 23.3714 133.6970 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: -0.0946 REMARK 3 T33: -0.3040 T12: 0.0051 REMARK 3 T13: 0.1520 T23: -0.0814 REMARK 3 L TENSOR REMARK 3 L11: 2.4072 L22: 3.3627 REMARK 3 L33: 8.0553 L12: -1.7481 REMARK 3 L13: -0.6684 L23: -1.6879 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: -0.5442 S13: 0.0405 REMARK 3 S21: 0.4311 S22: 0.3328 S23: 0.0565 REMARK 3 S31: 0.1896 S32: -0.0011 S33: -0.3345 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {P|35 - 48} REMARK 3 ORIGIN FOR THE GROUP (A): 101.9350 20.3623 81.5505 REMARK 3 T TENSOR REMARK 3 T11: -0.0400 T22: 0.0167 REMARK 3 T33: 0.0078 T12: 0.0327 REMARK 3 T13: -0.0058 T23: 0.0812 REMARK 3 L TENSOR REMARK 3 L11: 1.5836 L22: 4.2621 REMARK 3 L33: 2.4930 L12: -2.9104 REMARK 3 L13: -0.6771 L23: -1.0113 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: 0.1704 S13: 0.0669 REMARK 3 S21: -0.2429 S22: 0.0661 S23: -0.0860 REMARK 3 S31: -0.1542 S32: -0.2485 S33: -0.0937 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E4Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235720. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30008 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.68300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1QYG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% W/V PEG8000, 0.2 M ZINC ACETATE, REMARK 280 0.1 M SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.18900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.26350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.18900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.26350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 446 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 THR H 221 REMARK 465 CYS L 214 REMARK 465 GLU P 32 REMARK 465 ASP P 33 REMARK 465 GLU P 34 REMARK 465 GLU P 49 REMARK 465 ASP P 50 REMARK 465 GLY P 51 REMARK 465 LEU P 52 REMARK 465 ALA P 53 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 144 83.51 57.11 REMARK 500 MET L 51 -39.28 68.91 REMARK 500 ASN L 138 77.02 37.64 REMARK 500 ASN L 152 25.94 49.15 REMARK 500 LYS L 190 -64.46 -104.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP H 53 OD1 REMARK 620 2 ASP L 60 OD1 68.8 REMARK 620 3 HOH L 447 O 111.6 112.0 REMARK 620 4 GLU P 48 OE2 111.6 46.5 111.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS H 164 NE2 REMARK 620 2 ASN L 137 OD1 103.1 REMARK 620 3 ASN L 138 OD1 90.8 87.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN P 101 DBREF 6E4Y H 1 221 PDB 6E4Y 6E4Y 1 221 DBREF 6E4Y L 1 106 PDB 6E4Y 6E4Y 1 106 DBREF1 6E4Y L 107 214 UNP A0A097PUG4_MOUSE DBREF2 6E4Y L A0A097PUG4 131 238 DBREF 6E4Y P 32 53 UNP Q8NBP7 PCSK9_HUMAN 32 53 SEQRES 1 H 224 GLU VAL LYS LEU GLU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 224 PRO GLY GLY SER MET LYS LEU SER CYS VAL ALA SER ARG SEQRES 3 H 224 PHE THR LEU SER LYS TYR TRP MET ASN TRP VAL ARG GLN SEQRES 4 H 224 SER PRO GLU LYS GLY LEU GLU TRP VAL ALA GLN ILE ARG SEQRES 5 H 224 LEU LYS SER ASP ASN TYR ALA THR NEP TYR ALA GLU SER SEQRES 6 H 224 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP SER LYS SEQRES 7 H 224 SER SER VAL TYR LEU GLN MET ASN ASN LEU ARG ALA GLU SEQRES 8 H 224 ASP THR GLY ILE TYR TYR CYS THR GLY GLU ILE PHE VAL SEQRES 9 H 224 ASN TRP GLY GLN GLY THR LEU VAL THR VAL SER ALA ALA SEQRES 10 H 224 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 11 H 224 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 12 H 224 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 13 H 224 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 14 H 224 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 15 H 224 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 16 H 224 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 17 H 224 LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS SEQRES 18 H 224 THR HIS THR SEQRES 1 L 219 ASP ILE VAL MET THR GLN ALA ALA PRO SER VAL PRO VAL SEQRES 2 L 219 THR PRO GLY GLU SER VAL SER ILE SER CYS ARG SER SER SEQRES 3 L 219 LYS SER LEU LEU HIS SER ASN GLY ASN THR TYR LEU TYR SEQRES 4 L 219 TRP PHE LEU GLN ARG PRO GLY GLN SER PRO GLN LEU LEU SEQRES 5 L 219 ILE TYR ARG MET SER ASN LEU ALA SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ALA PHE THR LEU SEQRES 7 L 219 ARG ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 L 219 TYR CYS MET GLN HIS LEU GLU TYR PRO PHE THR PHE GLY SEQRES 9 L 219 ALA GLY THR LYS LEU GLU LEU LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 P 22 GLU ASP GLU ASP GLY ASP TYR GLU GLU LEU VAL LEU ALA SEQRES 2 P 22 LEU ARG SER GLU GLU ASP GLY LEU ALA HET NEP H 58 14 HET ZN H 301 1 HET CL H 302 1 HET ZN L 301 1 HET ZN L 302 1 HET ZN P 101 1 HETNAM NEP N1-PHOSPHONOHISTIDINE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 1 NEP C6 H10 N3 O5 P FORMUL 4 ZN 4(ZN 2+) FORMUL 5 CL CL 1- FORMUL 9 HOH *133(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 LEU H 52A ASN H 54 5 5 HELIX 3 AA3 ASP H 73 LYS H 75 5 3 HELIX 4 AA4 ARG H 83 THR H 87 5 5 HELIX 5 AA5 SER H 156 ALA H 158 5 3 HELIX 6 AA6 SER H 187 LEU H 189 5 3 HELIX 7 AA7 LYS H 201 ASN H 204 5 4 HELIX 8 AA8 GLU L 79 VAL L 83 5 5 HELIX 9 AA9 SER L 121 LYS L 126 1 6 HELIX 10 AB1 LYS L 183 GLU L 187 1 5 HELIX 11 AB2 GLY P 36 ARG P 46 1 11 SHEET 1 AA1 4 LYS H 3 SER H 7 0 SHEET 2 AA1 4 MET H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA1 4 SER H 77 MET H 82 -1 O MET H 82 N MET H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 GLY H 88 THR H 93 -1 N GLY H 88 O VAL H 109 SHEET 4 AA2 6 MET H 34 SER H 40 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 GLY H 44 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O NEP H 58 N GLN H 50 SHEET 1 AA3 4 SER H 120 LEU H 124 0 SHEET 2 AA3 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA3 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA3 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA5 3 THR H 151 TRP H 154 0 SHEET 2 AA5 3 TYR H 194 HIS H 200 -1 O ASN H 199 N THR H 151 SHEET 3 AA5 3 THR H 205 VAL H 211 -1 O VAL H 211 N TYR H 194 SHEET 1 AA6 4 MET L 4 THR L 5 0 SHEET 2 AA6 4 VAL L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA6 4 ALA L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA6 4 PHE L 62 SER L 67 -1 N SER L 63 O ARG L 74 SHEET 1 AA7 6 SER L 10 VAL L 13 0 SHEET 2 AA7 6 THR L 102 LEU L 106 1 O GLU L 105 N VAL L 11 SHEET 3 AA7 6 GLY L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA7 6 LEU L 33 GLN L 38 -1 N TYR L 34 O MET L 89 SHEET 5 AA7 6 GLN L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA7 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA8 4 SER L 10 VAL L 13 0 SHEET 2 AA8 4 THR L 102 LEU L 106 1 O GLU L 105 N VAL L 11 SHEET 3 AA8 4 GLY L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA9 4 SER L 114 PHE L 118 0 SHEET 2 AA9 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 AA9 4 TYR L 173 SER L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 AA9 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB1 4 ALA L 153 LEU L 154 0 SHEET 2 AB1 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB1 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 AB1 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.06 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.04 LINK C THR H 57 N NEP H 58 1555 1555 1.34 LINK C NEP H 58 N TYR H 59 1555 1555 1.33 LINK OD1 ASP H 53 ZN ZN H 301 1555 1555 2.11 LINK NE2 HIS H 164 ZN ZN L 301 1555 1555 2.33 LINK ZN ZN H 301 OD1 ASP L 60 4457 1555 1.88 LINK ZN ZN H 301 O HOH L 447 1555 4557 2.09 LINK ZN ZN H 301 OE2 GLU P 48 1555 1555 1.89 LINK OD1 ASN L 137 ZN ZN L 301 1555 1555 2.25 LINK OD1 ASN L 138 ZN ZN L 301 1555 1555 2.21 LINK OE2 GLU P 40 ZN ZN P 101 1555 1555 2.44 CISPEP 1 PHE H 146 PRO H 147 0 -7.84 CISPEP 2 GLU H 148 PRO H 149 0 6.43 CISPEP 3 TYR L 94 PRO L 95 0 3.09 CISPEP 4 TYR L 140 PRO L 141 0 1.44 SITE 1 AC1 4 ASP H 53 ASP L 60 HOH L 447 GLU P 48 SITE 1 AC2 6 GLY H 94 ILE H 96 PHE H 97 VAL H 98 SITE 2 AC2 6 ASN H 99 TYR P 38 SITE 1 AC3 3 HIS H 164 ASN L 137 ASN L 138 SITE 1 AC4 3 ARG L 61 GLU L 79 GLU L 81 SITE 1 AC5 2 ASP P 37 GLU P 40 CRYST1 70.378 100.527 86.715 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014209 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009948 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011532 0.00000