HEADER SIGNALING PROTEIN 19-JUL-18 6E59 TITLE CRYSTAL STRUCTURE OF THE HUMAN NK1 TACHYKININ RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBSTANCE-P RECEPTOR, GLGA GLYCOGEN SYNTHASE, SUBSTANCE-P COMPND 3 RECEPTOR CHIMERA; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RECEPTOR (UNP RESIDUES 1-227, 238-346) WITH INTERVENING COMPND 6 GLYCOGEN SYNTHASE (UNP RESIDUES 218-413); COMPND 7 SYNONYM: SPR,NK-1 RECEPTOR,NK-1R,TACHYKININ RECEPTOR 1,GLYCOGEN COMPND 8 SYNTHASE; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, PYROCOCCUS ABYSSI (STRAIN GE5 / SOURCE 3 ORSAY); SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606, 272844; SOURCE 6 STRAIN: GE5 / ORSAY; SOURCE 7 GENE: TACR1, NK1R, TAC1R, PAB2292; SOURCE 8 EXPRESSION_SYSTEM: SPODOPTERA AFF. FRUGIPERDA 2 RZ-2014; SOURCE 9 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 1491790 KEYWDS G PROTEIN-COUPLED RECEPTOR FUSION PROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.YIN,L.CLARK,K.CHAPMAN,Z.SHAO,D.BOREK,Q.XU,J.WANG,D.M.ROSENBAUM REVDAT 5 11-OCT-23 6E59 1 REMARK REVDAT 4 18-DEC-19 6E59 1 REMARK REVDAT 3 09-JAN-19 6E59 1 JRNL REVDAT 2 26-DEC-18 6E59 1 JRNL REVDAT 1 12-DEC-18 6E59 0 JRNL AUTH J.YIN,K.CHAPMAN,L.D.CLARK,Z.SHAO,D.BOREK,Q.XU,J.WANG, JRNL AUTH 2 D.M.ROSENBAUM JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN NK1TACHYKININ RECEPTOR. JRNL REF PROC. NATL. ACAD. SCI. V. 115 13264 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30538204 JRNL DOI 10.1073/PNAS.1812717115 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.3 REMARK 3 NUMBER OF REFLECTIONS : 11310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 586 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 263 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 25.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3844 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.95000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.667 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.498 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 67.704 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.846 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.756 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3992 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3802 ; 0.007 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5425 ; 1.515 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8757 ; 1.534 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 478 ; 5.788 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;32.667 ;21.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 670 ;14.734 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.023 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 521 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4342 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 910 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 227 REMARK 3 RESIDUE RANGE : A 1001 A 1196 REMARK 3 RESIDUE RANGE : A 238 A 320 REMARK 3 ORIGIN FOR THE GROUP (A): -25.7333 53.0530 24.8756 REMARK 3 T TENSOR REMARK 3 T11: 0.3470 T22: 0.0939 REMARK 3 T33: 0.0192 T12: 0.0211 REMARK 3 T13: 0.0166 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.5641 L22: 1.0467 REMARK 3 L33: 3.4727 L12: -0.0857 REMARK 3 L13: 1.3482 L23: -0.5112 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: 0.1291 S13: 0.0060 REMARK 3 S21: 0.5774 S22: 0.0060 S23: 0.0512 REMARK 3 S31: -0.0236 S32: 0.3199 S33: -0.0507 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6E59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11937 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 34.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.16800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.46 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4ZJ8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, PH 5.4, 30% REMARK 280 PEG300, 200 MM POTASSIUM NITRATE, 2% 2,5-HEXANEDIOL, LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.89450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.98750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.89450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.98750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ASN A 3 REMARK 465 VAL A 4 REMARK 465 LEU A 5 REMARK 465 PRO A 6 REMARK 465 VAL A 7 REMARK 465 ASP A 8 REMARK 465 SER A 9 REMARK 465 ASP A 10 REMARK 465 LEU A 11 REMARK 465 SER A 12 REMARK 465 PRO A 13 REMARK 465 ASN A 14 REMARK 465 ILE A 15 REMARK 465 SER A 16 REMARK 465 THR A 17 REMARK 465 ASN A 18 REMARK 465 THR A 19 REMARK 465 SER A 20 REMARK 465 GLU A 21 REMARK 465 PRO A 22 REMARK 465 ASN A 23 REMARK 465 GLN A 24 REMARK 465 PHE A 25 REMARK 465 VAL A 26 REMARK 465 GLN A 27 REMARK 465 ARG A 321 REMARK 465 CYS A 322 REMARK 465 CYS A 323 REMARK 465 PRO A 324 REMARK 465 PHE A 325 REMARK 465 ILE A 326 REMARK 465 SER A 327 REMARK 465 ALA A 328 REMARK 465 GLY A 329 REMARK 465 ASP A 330 REMARK 465 TYR A 331 REMARK 465 GLU A 332 REMARK 465 GLY A 333 REMARK 465 LEU A 334 REMARK 465 GLU A 335 REMARK 465 MET A 336 REMARK 465 LYS A 337 REMARK 465 SER A 338 REMARK 465 THR A 339 REMARK 465 ARG A 340 REMARK 465 TYR A 341 REMARK 465 LEU A 342 REMARK 465 GLN A 343 REMARK 465 THR A 344 REMARK 465 GLN A 345 REMARK 465 GLY A 346 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 465 HIS A 350 REMARK 465 HIS A 351 REMARK 465 HIS A 352 REMARK 465 HIS A 353 REMARK 465 HIS A 354 REMARK 465 HIS A 355 REMARK 465 HIS A 356 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 102 -130.53 46.52 REMARK 500 TYR A 205 -69.84 -133.05 REMARK 500 GLN A1045 -69.82 -90.20 REMARK 500 PRO A1118 45.05 -87.06 REMARK 500 TYR A 272 -68.11 -139.05 REMARK 500 ILE A 283 -66.76 -127.58 REMARK 500 ALA A 319 -74.69 -118.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L76 A 2001 DBREF 6E59 A 1 227 UNP P25103 NK1R_HUMAN 1 227 DBREF 6E59 A 1001 1196 UNP Q9V2J8 Q9V2J8_PYRAB 218 413 DBREF 6E59 A 238 346 UNP P25103 NK1R_HUMAN 238 346 SEQADV 6E59 HIS A 347 UNP P25103 EXPRESSION TAG SEQADV 6E59 HIS A 348 UNP P25103 EXPRESSION TAG SEQADV 6E59 HIS A 349 UNP P25103 EXPRESSION TAG SEQADV 6E59 HIS A 350 UNP P25103 EXPRESSION TAG SEQADV 6E59 HIS A 351 UNP P25103 EXPRESSION TAG SEQADV 6E59 HIS A 352 UNP P25103 EXPRESSION TAG SEQADV 6E59 HIS A 353 UNP P25103 EXPRESSION TAG SEQADV 6E59 HIS A 354 UNP P25103 EXPRESSION TAG SEQADV 6E59 HIS A 355 UNP P25103 EXPRESSION TAG SEQADV 6E59 HIS A 356 UNP P25103 EXPRESSION TAG SEQRES 1 A 542 MET ASP ASN VAL LEU PRO VAL ASP SER ASP LEU SER PRO SEQRES 2 A 542 ASN ILE SER THR ASN THR SER GLU PRO ASN GLN PHE VAL SEQRES 3 A 542 GLN PRO ALA TRP GLN ILE VAL LEU TRP ALA ALA ALA TYR SEQRES 4 A 542 THR VAL ILE VAL VAL THR SER VAL VAL GLY ASN VAL VAL SEQRES 5 A 542 VAL MET TRP ILE ILE LEU ALA HIS LYS ARG MET ARG THR SEQRES 6 A 542 VAL THR ASN TYR PHE LEU VAL ASN LEU ALA PHE ALA GLU SEQRES 7 A 542 ALA SER MET ALA ALA PHE ASN THR VAL VAL ASN PHE THR SEQRES 8 A 542 TYR ALA VAL HIS ASN GLU TRP TYR TYR GLY LEU PHE TYR SEQRES 9 A 542 CYS LYS PHE HIS ASN PHE PHE PRO ILE ALA ALA VAL PHE SEQRES 10 A 542 ALA SER ILE TYR SER MET THR ALA VAL ALA PHE ASP ARG SEQRES 11 A 542 TYR MET ALA ILE ILE HIS PRO LEU GLN PRO ARG LEU SER SEQRES 12 A 542 ALA THR ALA THR LYS VAL VAL ILE CYS VAL ILE TRP VAL SEQRES 13 A 542 LEU ALA LEU LEU LEU ALA PHE PRO GLN GLY TYR TYR SER SEQRES 14 A 542 THR THR GLU THR MET PRO SER ARG VAL VAL CYS MET ILE SEQRES 15 A 542 GLU TRP PRO GLU HIS PRO ASN LYS ILE TYR GLU LYS VAL SEQRES 16 A 542 TYR HIS ILE CYS VAL THR VAL LEU ILE TYR PHE LEU PRO SEQRES 17 A 542 LEU LEU VAL ILE GLY TYR ALA TYR THR VAL VAL GLY ILE SEQRES 18 A 542 THR LEU TRP ALA SER GLU GLY ILE ASP CYS SER PHE TRP SEQRES 19 A 542 ASN GLU SER TYR LEU THR GLY SER ARG ASP GLU ARG LYS SEQRES 20 A 542 LYS SER LEU LEU SER LYS PHE GLY MET ASP GLU GLY VAL SEQRES 21 A 542 THR PHE MET PHE ILE GLY ARG PHE ASP ARG GLY GLN LYS SEQRES 22 A 542 GLY VAL ASP VAL LEU LEU LYS ALA ILE GLU ILE LEU SER SEQRES 23 A 542 SER LYS LYS GLU PHE GLN GLU MET ARG PHE ILE ILE ILE SEQRES 24 A 542 GLY LYS GLY ASP PRO GLU LEU GLU GLY TRP ALA ARG SER SEQRES 25 A 542 LEU GLU GLU LYS HIS GLY ASN VAL LYS VAL ILE THR GLU SEQRES 26 A 542 MET LEU SER ARG GLU PHE VAL ARG GLU LEU TYR GLY SER SEQRES 27 A 542 VAL ASP PHE VAL ILE ILE PRO SER TYR PHE GLU PRO PHE SEQRES 28 A 542 GLY LEU VAL ALA LEU GLU ALA MET CYS LEU GLY ALA ILE SEQRES 29 A 542 PRO ILE ALA SER ALA VAL GLY GLY LEU ARG ASP ILE ILE SEQRES 30 A 542 THR ASN GLU THR GLY ILE LEU VAL LYS ALA GLY ASP PRO SEQRES 31 A 542 GLY GLU LEU ALA ASN ALA ILE LEU LYS ALA LEU GLU LEU SEQRES 32 A 542 SER ARG SER ASP LEU SER LYS PHE ARG GLU ASN CYS LYS SEQRES 33 A 542 LYS ARG ALA MET SER PHE SER GLU GLN VAL SER ALA LYS SEQRES 34 A 542 ARG LYS VAL VAL LYS MET MET ILE VAL VAL VAL CYS THR SEQRES 35 A 542 PHE ALA ILE CYS TRP LEU PRO PHE HIS ILE PHE PHE LEU SEQRES 36 A 542 LEU PRO TYR ILE ASN PRO ASP LEU TYR LEU LYS LYS PHE SEQRES 37 A 542 ILE GLN GLN VAL TYR LEU ALA ILE MET TRP LEU ALA MET SEQRES 38 A 542 SER SER THR MET TYR ASN PRO ILE ILE TYR CYS CYS LEU SEQRES 39 A 542 ASN ASP ARG PHE ARG LEU GLY PHE LYS HIS ALA PHE ARG SEQRES 40 A 542 CYS CYS PRO PHE ILE SER ALA GLY ASP TYR GLU GLY LEU SEQRES 41 A 542 GLU MET LYS SER THR ARG TYR LEU GLN THR GLN GLY HIS SEQRES 42 A 542 HIS HIS HIS HIS HIS HIS HIS HIS HIS HET L76 A2001 40 HETNAM L76 1-(4-{[(2R,3S)-2-{(1R)-1-[3,5-BIS(TRIFLUOROMETHYL) HETNAM 2 L76 PHENYL]ETHOXY}-3-(4-FLUOROPHENYL)MORPHOLIN-4- HETNAM 3 L76 YL]METHYL}-1H-1,2,3-TRIAZOL-5-YL)-N,N- HETNAM 4 L76 DIMETHYLMETHANAMINE FORMUL 2 L76 C26 H28 F7 N5 O2 HELIX 1 AA1 VAL A 33 HIS A 60 1 28 HELIX 2 AA2 THR A 65 ALA A 79 1 15 HELIX 3 AA3 MET A 81 VAL A 94 1 14 HELIX 4 AA4 PHE A 103 HIS A 136 1 34 HELIX 5 AA5 SER A 143 TYR A 167 1 25 HELIX 6 AA6 PRO A 188 TYR A 205 1 18 HELIX 7 AA7 TYR A 205 ALA A 225 1 21 HELIX 8 AA8 ASN A 1008 LEU A 1012 5 5 HELIX 9 AA9 SER A 1015 PHE A 1027 1 13 HELIX 10 AB1 GLY A 1047 SER A 1060 1 14 HELIX 11 AB2 LYS A 1061 GLN A 1065 5 5 HELIX 12 AB3 ASP A 1076 HIS A 1090 1 15 HELIX 13 AB4 SER A 1101 GLY A 1110 1 10 HELIX 14 AB5 GLY A 1125 LEU A 1134 1 10 HELIX 15 AB6 GLY A 1144 ILE A 1150 1 7 HELIX 16 AB7 ASP A 1162 SER A 1177 1 16 HELIX 17 AB8 LEU A 1181 TRP A 261 1 40 HELIX 18 AB9 TRP A 261 LEU A 270 1 10 HELIX 19 AC1 ILE A 283 SER A 297 1 15 HELIX 20 AC2 TYR A 300 ASN A 309 1 10 HELIX 21 AC3 ASN A 309 ALA A 319 1 11 SHEET 1 AA1 2 THR A 170 THR A 173 0 SHEET 2 AA1 2 VAL A 178 MET A 181 -1 O VAL A 179 N GLU A 172 SHEET 1 AA2 6 VAL A1093 ILE A1096 0 SHEET 2 AA2 6 MET A1067 ILE A1072 1 N ILE A1071 O LYS A1094 SHEET 3 AA2 6 VAL A1033 ILE A1038 1 N PHE A1035 O ARG A1068 SHEET 4 AA2 6 PHE A1114 ILE A1117 1 O ILE A1116 N MET A1036 SHEET 5 AA2 6 ILE A1137 SER A1141 1 O ILE A1139 N VAL A1115 SHEET 6 AA2 6 ILE A1156 VAL A1158 1 O ILE A1156 N PRO A1138 SSBOND 1 CYS A 105 CYS A 180 1555 1555 2.06 SITE 1 AC1 12 PHE A 90 ASN A 109 PRO A 112 ILE A 113 SITE 2 AC1 12 VAL A 116 GLN A 165 HIS A 197 THR A 201 SITE 3 AC1 12 ILE A 204 PHE A 264 PHE A 268 TYR A 272 CRYST1 123.789 61.975 142.942 90.00 100.18 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008078 0.000000 0.001451 0.00000 SCALE2 0.000000 0.016136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007108 0.00000