HEADER TRANSCRIPTION 19-JUL-18 6E5A TITLE PPARG IN COMPLEX WITH COMPOUND 4B COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: CYS 285 WAS MODIFIED BY BME ADDUCT IN PROTEIN BUFFER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS PPAR, NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, LIGAND BINDING DOMAIN, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BRUNING,B.S.K.CHUA REVDAT 2 11-OCT-23 6E5A 1 REMARK REVDAT 1 13-MAR-19 6E5A 0 JRNL AUTH P.A.ELZAHHAR,R.ALAAEDDINE,T.M.IBRAHIM,R.NASSRA,A.ISMAIL, JRNL AUTH 2 B.S.K.CHUA,R.L.FRKIC,J.B.BRUNING,N.WALLNER,T.KNAPE, JRNL AUTH 3 A.VON KNETHEN,H.LABIB,A.F.EL-YAZBI,A.S.F.BELAL JRNL TITL SHOOTING THREE INFLAMMATORY TARGETS WITH A SINGLE BULLET: JRNL TITL 2 NOVEL MULTI-TARGETING ANTI-INFLAMMATORY GLITAZONES. JRNL REF EUR J MED CHEM V. 167 562 2019 JRNL REFN ISSN 1768-3254 JRNL PMID 30818268 JRNL DOI 10.1016/J.EJMECH.2019.02.034 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 25313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5410 - 4.9903 1.00 2774 134 0.2018 0.2399 REMARK 3 2 4.9903 - 3.9617 0.99 2664 147 0.1908 0.2310 REMARK 3 3 3.9617 - 3.4611 0.99 2650 152 0.2045 0.2731 REMARK 3 4 3.4611 - 3.1448 1.00 2698 141 0.2383 0.2693 REMARK 3 5 3.1448 - 2.9194 1.00 2632 137 0.2574 0.3009 REMARK 3 6 2.9194 - 2.7473 0.99 2681 131 0.2677 0.3715 REMARK 3 7 2.7473 - 2.6097 1.00 2653 154 0.2752 0.3225 REMARK 3 8 2.6097 - 2.4961 1.00 2667 124 0.3334 0.3889 REMARK 3 9 2.4961 - 2.4000 0.99 2622 152 0.3486 0.3974 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 403 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7650 -4.4944 138.6726 REMARK 3 T TENSOR REMARK 3 T11: 0.6716 T22: 0.8544 REMARK 3 T33: 0.7116 T12: 0.0150 REMARK 3 T13: -0.0518 T23: 0.0773 REMARK 3 L TENSOR REMARK 3 L11: 5.4245 L22: 2.9529 REMARK 3 L33: 2.2732 L12: 0.5098 REMARK 3 L13: -0.1073 L23: -1.6705 REMARK 3 S TENSOR REMARK 3 S11: 0.5469 S12: 0.4012 S13: 0.1696 REMARK 3 S21: 0.1430 S22: 0.2954 S23: 0.7866 REMARK 3 S31: -0.0107 S32: -1.9020 S33: -0.3289 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 431 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9623 10.8653 145.2305 REMARK 3 T TENSOR REMARK 3 T11: 0.5607 T22: 0.5176 REMARK 3 T33: 0.5268 T12: 0.0227 REMARK 3 T13: 0.1054 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 2.3822 L22: 6.3403 REMARK 3 L33: 7.9917 L12: 2.9407 REMARK 3 L13: 0.0648 L23: -1.0694 REMARK 3 S TENSOR REMARK 3 S11: 0.5551 S12: -0.2570 S13: 0.3701 REMARK 3 S21: 0.4502 S22: -0.2234 S23: -0.0600 REMARK 3 S31: -1.2075 S32: 0.3680 S33: -0.4039 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 459 THROUGH 476 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6297 6.3457 146.2446 REMARK 3 T TENSOR REMARK 3 T11: 1.3059 T22: 1.1397 REMARK 3 T33: 1.2221 T12: 0.1744 REMARK 3 T13: 0.3400 T23: 0.0560 REMARK 3 L TENSOR REMARK 3 L11: 9.7542 L22: 7.7942 REMARK 3 L33: 8.7916 L12: -7.1207 REMARK 3 L13: -7.0369 L23: 4.8893 REMARK 3 S TENSOR REMARK 3 S11: -0.5417 S12: -0.6854 S13: -1.4697 REMARK 3 S21: -1.3657 S22: 0.3733 S23: -0.8647 REMARK 3 S31: -0.3723 S32: 1.0548 S33: -0.1276 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3454 18.2450 126.3084 REMARK 3 T TENSOR REMARK 3 T11: 0.4300 T22: 0.9484 REMARK 3 T33: 0.5619 T12: 0.2198 REMARK 3 T13: 0.0045 T23: 0.1056 REMARK 3 L TENSOR REMARK 3 L11: 8.8279 L22: 3.1427 REMARK 3 L33: 7.7865 L12: 2.3585 REMARK 3 L13: -3.9198 L23: 0.5273 REMARK 3 S TENSOR REMARK 3 S11: -0.1409 S12: 0.1116 S13: -0.2071 REMARK 3 S21: 0.1096 S22: 0.3784 S23: 0.0481 REMARK 3 S31: -0.5941 S32: -1.5911 S33: -0.3362 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3687 37.5690 114.0477 REMARK 3 T TENSOR REMARK 3 T11: 1.2468 T22: 0.8848 REMARK 3 T33: 0.8931 T12: -0.5025 REMARK 3 T13: -0.2190 T23: 0.0799 REMARK 3 L TENSOR REMARK 3 L11: 5.0287 L22: 3.7110 REMARK 3 L33: 5.1431 L12: 1.2994 REMARK 3 L13: 4.2833 L23: 3.3359 REMARK 3 S TENSOR REMARK 3 S11: -0.9593 S12: 1.0003 S13: 1.7963 REMARK 3 S21: -2.5659 S22: -0.0090 S23: -1.4138 REMARK 3 S31: -3.0322 S32: 2.3625 S33: 0.4036 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4903 27.4702 137.7119 REMARK 3 T TENSOR REMARK 3 T11: 0.8786 T22: 0.8363 REMARK 3 T33: 0.5215 T12: 0.2079 REMARK 3 T13: -0.0842 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 2.7881 L22: 2.2318 REMARK 3 L33: 6.1664 L12: 1.0642 REMARK 3 L13: -1.5534 L23: -0.4870 REMARK 3 S TENSOR REMARK 3 S11: -0.1801 S12: -0.5144 S13: 0.4312 REMARK 3 S21: 0.5231 S22: 0.1599 S23: 0.0323 REMARK 3 S31: -1.2489 S32: 0.2341 S33: -0.0338 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 334 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2516 28.2401 121.5954 REMARK 3 T TENSOR REMARK 3 T11: 0.7410 T22: 0.8484 REMARK 3 T33: 0.5281 T12: -0.1579 REMARK 3 T13: -0.0133 T23: -0.0690 REMARK 3 L TENSOR REMARK 3 L11: 9.9847 L22: 8.3132 REMARK 3 L33: 9.1024 L12: 1.0827 REMARK 3 L13: 1.6037 L23: -2.0139 REMARK 3 S TENSOR REMARK 3 S11: -0.4479 S12: -0.5690 S13: 0.3672 REMARK 3 S21: 0.3507 S22: 0.0236 S23: -1.1007 REMARK 3 S31: -1.1721 S32: 1.2321 S33: 0.3254 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 365 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9544 11.9086 136.8392 REMARK 3 T TENSOR REMARK 3 T11: 0.5194 T22: 0.7246 REMARK 3 T33: 0.5859 T12: 0.1473 REMARK 3 T13: 0.0200 T23: 0.0703 REMARK 3 L TENSOR REMARK 3 L11: 3.8588 L22: 3.0117 REMARK 3 L33: 5.2995 L12: 0.4389 REMARK 3 L13: 1.3579 L23: -2.5737 REMARK 3 S TENSOR REMARK 3 S11: -0.2475 S12: -0.7894 S13: -0.5653 REMARK 3 S21: 0.1772 S22: 0.3164 S23: -0.1931 REMARK 3 S31: 0.4202 S32: -0.0771 S33: -0.0661 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8437 19.3961 136.8511 REMARK 3 T TENSOR REMARK 3 T11: 0.5771 T22: 0.7968 REMARK 3 T33: 0.8165 T12: 0.0385 REMARK 3 T13: -0.0950 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 7.9123 L22: 3.4861 REMARK 3 L33: 6.6251 L12: 4.8026 REMARK 3 L13: 1.6033 L23: -0.7980 REMARK 3 S TENSOR REMARK 3 S11: -0.4194 S12: -0.5371 S13: -0.0343 REMARK 3 S21: 0.1473 S22: 0.0560 S23: -1.0395 REMARK 3 S31: -0.7078 S32: 1.2647 S33: 0.2911 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 460 THROUGH 476 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5302 35.8053 140.8421 REMARK 3 T TENSOR REMARK 3 T11: 1.5133 T22: 1.4165 REMARK 3 T33: 1.0055 T12: -0.0098 REMARK 3 T13: 0.0168 T23: -0.2154 REMARK 3 L TENSOR REMARK 3 L11: 8.6167 L22: 9.3501 REMARK 3 L33: 2.8507 L12: 5.1193 REMARK 3 L13: -2.6910 L23: 0.2294 REMARK 3 S TENSOR REMARK 3 S11: 1.4104 S12: -0.4202 S13: -0.4545 REMARK 3 S21: 1.1333 S22: -0.9330 S23: 0.4641 REMARK 3 S31: -0.5879 S32: 0.6886 S33: -0.0596 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 207 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8930 -14.2141 142.7068 REMARK 3 T TENSOR REMARK 3 T11: 1.0597 T22: 0.5632 REMARK 3 T33: 0.6505 T12: -0.0728 REMARK 3 T13: 0.1101 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 3.6321 L22: 5.8593 REMARK 3 L33: 3.9391 L12: 1.6219 REMARK 3 L13: 3.6823 L23: 2.3084 REMARK 3 S TENSOR REMARK 3 S11: 0.5868 S12: 0.4500 S13: -1.5403 REMARK 3 S21: -0.2135 S22: -0.3290 S23: -0.2809 REMARK 3 S31: 1.7265 S32: 0.0353 S33: -0.4373 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 226 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7234 -3.8054 163.8139 REMARK 3 T TENSOR REMARK 3 T11: 0.8009 T22: 1.1529 REMARK 3 T33: 0.6829 T12: 0.0458 REMARK 3 T13: 0.1337 T23: 0.0926 REMARK 3 L TENSOR REMARK 3 L11: 1.9403 L22: 1.0161 REMARK 3 L33: 9.4236 L12: 1.0600 REMARK 3 L13: 2.3163 L23: -0.5541 REMARK 3 S TENSOR REMARK 3 S11: 0.6609 S12: -1.0115 S13: -0.0449 REMARK 3 S21: 0.8327 S22: -0.2104 S23: -0.0592 REMARK 3 S31: 0.7850 S32: 0.5198 S33: 0.1588 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 252 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0485 1.9435 166.4337 REMARK 3 T TENSOR REMARK 3 T11: 0.8705 T22: 1.7281 REMARK 3 T33: 0.6989 T12: -0.0212 REMARK 3 T13: -0.0092 T23: 0.1528 REMARK 3 L TENSOR REMARK 3 L11: 4.9025 L22: 2.8130 REMARK 3 L33: 9.1128 L12: -1.3924 REMARK 3 L13: -5.5387 L23: -0.9438 REMARK 3 S TENSOR REMARK 3 S11: 0.2152 S12: -3.1110 S13: -0.4411 REMARK 3 S21: 0.7402 S22: -0.1969 S23: -0.9936 REMARK 3 S31: -0.1419 S32: 2.7483 S33: -0.5353 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 277 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7804 -0.5217 149.5113 REMARK 3 T TENSOR REMARK 3 T11: 0.6208 T22: 0.8865 REMARK 3 T33: 0.5883 T12: 0.2041 REMARK 3 T13: 0.0990 T23: 0.0483 REMARK 3 L TENSOR REMARK 3 L11: 8.6005 L22: 2.7522 REMARK 3 L33: 6.1576 L12: 2.7753 REMARK 3 L13: 1.7161 L23: 2.3727 REMARK 3 S TENSOR REMARK 3 S11: 0.5201 S12: -0.8910 S13: -0.1685 REMARK 3 S21: 0.3617 S22: -0.1729 S23: -0.3258 REMARK 3 S31: 0.7140 S32: 1.0460 S33: -0.2273 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 303 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3302 -1.6307 138.7316 REMARK 3 T TENSOR REMARK 3 T11: 0.5081 T22: 0.4594 REMARK 3 T33: 0.5042 T12: 0.1766 REMARK 3 T13: 0.0367 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 6.4429 L22: 2.1468 REMARK 3 L33: 8.9261 L12: 1.6217 REMARK 3 L13: -2.0472 L23: -0.8128 REMARK 3 S TENSOR REMARK 3 S11: 0.0362 S12: -0.0824 S13: -0.2018 REMARK 3 S21: -0.2462 S22: 0.0942 S23: -0.1547 REMARK 3 S31: -0.5190 S32: 0.2565 S33: -0.2434 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 334 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1385 7.9419 161.6981 REMARK 3 T TENSOR REMARK 3 T11: 0.8437 T22: 1.0676 REMARK 3 T33: 0.6284 T12: 0.0694 REMARK 3 T13: 0.1510 T23: -0.0813 REMARK 3 L TENSOR REMARK 3 L11: 7.7717 L22: 1.8139 REMARK 3 L33: 8.5433 L12: 3.2058 REMARK 3 L13: -2.2671 L23: -1.5272 REMARK 3 S TENSOR REMARK 3 S11: 0.4104 S12: -1.5344 S13: 0.8120 REMARK 3 S21: 0.1541 S22: -0.1779 S23: 0.3068 REMARK 3 S31: -1.2348 S32: 0.5136 S33: -0.2392 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 365 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5014 2.0810 145.3466 REMARK 3 T TENSOR REMARK 3 T11: 0.5488 T22: 0.3595 REMARK 3 T33: 0.5786 T12: 0.1199 REMARK 3 T13: 0.0902 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 3.4250 L22: 0.7318 REMARK 3 L33: 7.2044 L12: 0.0158 REMARK 3 L13: -0.0443 L23: -0.2803 REMARK 3 S TENSOR REMARK 3 S11: 0.1598 S12: -0.1780 S13: 0.3023 REMARK 3 S21: -0.1542 S22: -0.1540 S23: 0.2636 REMARK 3 S31: -0.5093 S32: -0.1910 S33: -0.1800 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : MIRRORS - SI ANS RH COATINGS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25380 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 45.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 1.36700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 5U5L REMARK 200 REMARK 200 REMARK: CUBIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M NA CITRATE, PH 8, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.27750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.58150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.27750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.58150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -46.27750 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 30.58150 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 263 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 SER A 274 REMARK 465 LYS A 275 REMARK 465 TYR A 477 REMARK 465 ASN B 205 REMARK 465 PRO B 206 REMARK 465 THR B 241 REMARK 465 THR B 242 REMARK 465 ASP B 243 REMARK 465 LYS B 244 REMARK 465 PRO B 269 REMARK 465 LEU B 270 REMARK 465 GLN B 271 REMARK 465 GLU B 272 REMARK 465 GLN B 273 REMARK 465 SER B 274 REMARK 465 LYS B 275 REMARK 465 ASP B 462 REMARK 465 MET B 463 REMARK 465 SER B 464 REMARK 465 LEU B 465 REMARK 465 HIS B 466 REMARK 465 TYR B 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 205 CG OD1 ND2 REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 LYS A 261 CD CE NZ REMARK 470 ILE A 262 CG1 CG2 CD1 REMARK 470 LYS A 358 CG CD CE NZ REMARK 470 LYS A 457 CG CD CE NZ REMARK 470 THR A 461 OG1 CG2 REMARK 470 LYS A 474 CG CD CE NZ REMARK 470 ASP A 475 CG OD1 OD2 REMARK 470 LYS B 240 CG CD CE NZ REMARK 470 ASP B 260 CG OD1 OD2 REMARK 470 LYS B 261 CG CD CE NZ REMARK 470 ILE B 262 CG1 CG2 CD1 REMARK 470 LYS B 263 CG CD CE NZ REMARK 470 HIS B 266 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 267 CG1 CG2 CD1 REMARK 470 GLU B 276 CG CD OE1 OE2 REMARK 470 LYS B 358 CG CD CE NZ REMARK 470 GLU B 427 CG CD OE1 OE2 REMARK 470 ILE B 456 CG1 CG2 CD1 REMARK 470 LYS B 457 CG CD CE NZ REMARK 470 LYS B 458 CG CD CE NZ REMARK 470 GLU B 460 CG CD OE1 OE2 REMARK 470 THR B 461 OG1 CG2 REMARK 470 TYR B 473 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 476 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 206 -98.10 -68.84 REMARK 500 LYS A 240 20.29 -66.73 REMARK 500 TYR A 250 -7.15 -142.59 REMARK 500 LYS A 261 44.50 -93.47 REMARK 500 ASN A 335 -166.91 -123.70 REMARK 500 LYS A 358 58.57 -67.70 REMARK 500 LEU A 393 59.39 -90.48 REMARK 500 PHE B 264 -143.10 -138.85 REMARK 500 LYS B 265 -16.79 -156.61 REMARK 500 LEU B 393 47.46 -83.77 REMARK 500 TYR B 473 61.26 -108.62 REMARK 500 ASP B 475 -118.69 -152.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 358 PRO A 359 116.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HV4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HV4 B 501 DBREF 6E5A A 205 477 UNP P37231 PPARG_HUMAN 233 505 DBREF 6E5A B 205 477 UNP P37231 PPARG_HUMAN 233 505 SEQRES 1 A 273 ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA LYS HIS SEQRES 2 A 273 LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU THR LYS SEQRES 3 A 273 ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR THR ASP SEQRES 4 A 273 LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER LEU MET SEQRES 5 A 273 MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE THR PRO SEQRES 6 A 273 LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG ILE PHE SEQRES 7 A 273 GLN GLY CME GLN PHE ARG SER VAL GLU ALA VAL GLN GLU SEQRES 8 A 273 ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE VAL ASN SEQRES 9 A 273 LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS TYR GLY SEQRES 10 A 273 VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER LEU MET SEQRES 11 A 273 ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN GLY PHE SEQRES 12 A 273 MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS PRO PHE SEQRES 13 A 273 GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA VAL LYS SEQRES 14 A 273 PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU ALA ILE SEQRES 15 A 273 PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG PRO GLY SEQRES 16 A 273 LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP ASN SEQRES 17 A 273 LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN HIS SEQRES 18 A 273 PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU GLN LYS SEQRES 19 A 273 MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS VAL GLN SEQRES 20 A 273 LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP MET SER SEQRES 21 A 273 LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU TYR SEQRES 1 B 273 ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA LYS HIS SEQRES 2 B 273 LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU THR LYS SEQRES 3 B 273 ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR THR ASP SEQRES 4 B 273 LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER LEU MET SEQRES 5 B 273 MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE THR PRO SEQRES 6 B 273 LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG ILE PHE SEQRES 7 B 273 GLN GLY CME GLN PHE ARG SER VAL GLU ALA VAL GLN GLU SEQRES 8 B 273 ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE VAL ASN SEQRES 9 B 273 LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS TYR GLY SEQRES 10 B 273 VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER LEU MET SEQRES 11 B 273 ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN GLY PHE SEQRES 12 B 273 MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS PRO PHE SEQRES 13 B 273 GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA VAL LYS SEQRES 14 B 273 PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU ALA ILE SEQRES 15 B 273 PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG PRO GLY SEQRES 16 B 273 LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP ASN SEQRES 17 B 273 LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN HIS SEQRES 18 B 273 PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU GLN LYS SEQRES 19 B 273 MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS VAL GLN SEQRES 20 B 273 LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP MET SER SEQRES 21 B 273 LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU TYR MODRES 6E5A CME A 285 CYS MODIFIED RESIDUE MODRES 6E5A CME B 285 CYS MODIFIED RESIDUE HET CME A 285 17 HET CME B 285 10 HET HV4 A 501 18 HET HV4 B 501 18 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM HV4 (5Z)-5-({4-[(PROP-2-YN-1-YL)OXY]PHENYL}METHYLIDENE)-2- HETNAM 2 HV4 SULFANYLIDENE-1,3-THIAZOLIDIN-4-ONE FORMUL 1 CME 2(C5 H11 N O3 S2) FORMUL 3 HV4 2(C13 H9 N O2 S2) FORMUL 5 HOH *55(H2 O) HELIX 1 AA1 GLU A 207 PHE A 226 1 20 HELIX 2 AA2 THR A 229 GLY A 239 1 11 HELIX 3 AA3 ASP A 251 GLU A 259 1 9 HELIX 4 AA4 VAL A 277 SER A 302 1 26 HELIX 5 AA5 ASP A 310 ALA A 331 1 22 HELIX 6 AA6 SER A 332 MET A 334 5 3 HELIX 7 AA7 SER A 342 GLY A 344 5 3 HELIX 8 AA8 ARG A 350 SER A 355 1 6 HELIX 9 AA9 PRO A 359 PHE A 363 5 5 HELIX 10 AB1 MET A 364 ALA A 376 1 13 HELIX 11 AB2 ASP A 380 LEU A 393 1 14 HELIX 12 AB3 ASN A 402 HIS A 425 1 24 HELIX 13 AB4 GLN A 430 GLU A 460 1 31 HELIX 14 AB5 HIS A 466 LYS A 474 1 9 HELIX 15 AB6 SER B 208 PHE B 226 1 19 HELIX 16 AB7 THR B 229 LEU B 237 1 9 HELIX 17 AB8 ASP B 251 ILE B 262 1 12 HELIX 18 AB9 VAL B 277 LYS B 301 1 25 HELIX 19 AC1 ASP B 310 LEU B 333 1 24 HELIX 20 AC2 ARG B 350 SER B 355 1 6 HELIX 21 AC3 PRO B 359 PHE B 363 5 5 HELIX 22 AC4 MET B 364 ALA B 376 1 13 HELIX 23 AC5 ASP B 380 LEU B 393 1 14 HELIX 24 AC6 ASN B 402 HIS B 425 1 24 HELIX 25 AC7 GLN B 430 LYS B 457 1 28 HELIX 26 AC8 LEU B 468 TYR B 473 1 6 SHEET 1 AA1 3 PHE A 247 ILE A 249 0 SHEET 2 AA1 3 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 AA1 3 GLY A 338 ILE A 341 -1 N ILE A 341 O GLY A 346 SHEET 1 AA2 4 PHE B 247 ILE B 249 0 SHEET 2 AA2 4 GLY B 346 THR B 349 1 O PHE B 347 N ILE B 249 SHEET 3 AA2 4 GLY B 338 ILE B 341 -1 N ILE B 341 O GLY B 346 SHEET 4 AA2 4 MET B 334 ASN B 335 -1 N ASN B 335 O GLY B 338 LINK C GLY A 284 N CME A 285 1555 1555 1.33 LINK C CME A 285 N GLN A 286 1555 1555 1.33 LINK C GLY B 284 N CME B 285 1555 1555 1.33 LINK C CME B 285 N GLN B 286 1555 1555 1.33 CISPEP 1 LYS B 358 PRO B 359 0 -1.44 SITE 1 AC1 8 ILE A 281 CME A 285 ARG A 288 ILE A 341 SITE 2 AC1 8 SER A 342 LEU A 353 PHE A 360 MET A 364 SITE 1 AC2 12 LYS B 265 ILE B 281 GLY B 284 CME B 285 SITE 2 AC2 12 ARG B 288 ILE B 341 SER B 342 LEU B 353 SITE 3 AC2 12 PHE B 360 PHE B 363 MET B 364 HOH B 601 CRYST1 92.555 61.163 118.092 90.00 102.39 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010804 0.000000 0.002373 0.00000 SCALE2 0.000000 0.016350 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008670 0.00000