HEADER LIPID BINDING PROTEIN 20-JUL-18 6E5F TITLE CRYSTAL STRUCTURE OF LPQN INVOLVED IN CELL ENVELOPE BIOGENESIS OF TITLE 2 MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPID BINDING PROTEIN LPQN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 ATCC: 25618; SOURCE 7 GENE: LPQN, RV0583C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-MOD KEYWDS LIPID BINDING PROTEIN, (6DDTRE)LAURYL-6-TREHALOSIDE EXPDTA X-RAY DIFFRACTION AUTHOR M.RAJAVEL,C.C.SU,E.W.YU REVDAT 3 11-OCT-23 6E5F 1 REMARK REVDAT 2 06-NOV-19 6E5F 1 JRNL REVDAT 1 24-JUL-19 6E5F 0 JRNL AUTH G.C.MELLY,H.STOKAS,J.L.DUNAJ,F.F.HSU,M.RAJAVEL,C.C.SU, JRNL AUTH 2 E.W.YU,G.E.PURDY JRNL TITL STRUCTURAL AND FUNCTIONAL EVIDENCE THAT LIPOPROTEIN LPQN JRNL TITL 2 SUPPORTS CELL ENVELOPE BIOGENESIS INMYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS. JRNL REF J.BIOL.CHEM. V. 294 15711 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31471317 JRNL DOI 10.1074/JBC.RA119.008781 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14RC1_3177 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 39223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.620 REMARK 3 FREE R VALUE TEST SET COUNT : 1812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.6200 - 3.2200 1.00 2973 116 0.1532 0.1902 REMARK 3 2 3.2200 - 2.5600 1.00 2863 163 0.1764 0.1925 REMARK 3 3 2.5600 - 2.2300 1.00 2900 140 0.1773 0.2015 REMARK 3 4 2.2300 - 2.0300 1.00 2852 168 0.1752 0.1862 REMARK 3 5 2.0300 - 1.8800 1.00 2876 128 0.1782 0.1950 REMARK 3 6 1.8800 - 1.7700 1.00 2867 149 0.1989 0.2233 REMARK 3 7 1.7700 - 1.6800 1.00 2881 132 0.2059 0.2484 REMARK 3 8 1.6800 - 1.6100 1.00 2896 131 0.2027 0.2404 REMARK 3 9 1.6100 - 1.5500 1.00 2843 164 0.1990 0.2267 REMARK 3 10 1.5500 - 1.5000 1.00 2870 163 0.2129 0.2455 REMARK 3 11 1.5000 - 1.4500 1.00 2856 119 0.2350 0.2640 REMARK 3 12 1.4500 - 1.4100 0.99 2874 126 0.2680 0.3392 REMARK 3 13 1.4100 - 1.3700 0.98 2860 113 0.3346 0.3148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.168 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.012 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1408 REMARK 3 ANGLE : 0.764 1946 REMARK 3 CHIRALITY : 0.066 232 REMARK 3 PLANARITY : 0.004 254 REMARK 3 DIHEDRAL : 18.308 575 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1870 -4.8075 20.2730 REMARK 3 T TENSOR REMARK 3 T11: 0.1343 T22: 0.3086 REMARK 3 T33: 0.1963 T12: 0.0716 REMARK 3 T13: -0.0024 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 1.7814 L22: 4.8389 REMARK 3 L33: 3.6855 L12: 0.7129 REMARK 3 L13: -0.0561 L23: 1.0676 REMARK 3 S TENSOR REMARK 3 S11: -0.1897 S12: -0.1084 S13: -0.0213 REMARK 3 S21: 0.1501 S22: 0.3649 S23: -0.0929 REMARK 3 S31: 0.1302 S32: 0.4097 S33: -0.1135 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.1077 -19.7610 20.3215 REMARK 3 T TENSOR REMARK 3 T11: 0.3695 T22: 0.2310 REMARK 3 T33: 0.1891 T12: 0.2243 REMARK 3 T13: 0.0253 T23: 0.0732 REMARK 3 L TENSOR REMARK 3 L11: 5.0838 L22: 6.9793 REMARK 3 L33: 4.0189 L12: 5.0040 REMARK 3 L13: 4.3915 L23: 4.7177 REMARK 3 S TENSOR REMARK 3 S11: 0.0581 S12: -0.2036 S13: -0.2832 REMARK 3 S21: 0.2178 S22: 0.2274 S23: -0.3938 REMARK 3 S31: 0.4217 S32: 0.7427 S33: -0.1546 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4924 -15.3298 15.1408 REMARK 3 T TENSOR REMARK 3 T11: 0.3280 T22: 0.2117 REMARK 3 T33: 0.1729 T12: 0.1314 REMARK 3 T13: -0.0234 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 1.5981 L22: 6.7006 REMARK 3 L33: 3.2159 L12: -1.1840 REMARK 3 L13: -0.4881 L23: 2.3590 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: -0.1462 S13: -0.1757 REMARK 3 S21: -0.0337 S22: 0.0467 S23: -0.1471 REMARK 3 S31: 0.6703 S32: 0.4197 S33: -0.0981 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3001 -1.7471 5.9569 REMARK 3 T TENSOR REMARK 3 T11: 0.2387 T22: 0.2782 REMARK 3 T33: 0.1991 T12: -0.0328 REMARK 3 T13: 0.0126 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 6.9206 L22: 5.3213 REMARK 3 L33: 7.0526 L12: -2.5629 REMARK 3 L13: -2.4686 L23: 3.3249 REMARK 3 S TENSOR REMARK 3 S11: 0.1452 S12: -0.1489 S13: 0.0124 REMARK 3 S21: -0.7502 S22: 0.1625 S23: -0.3197 REMARK 3 S31: -0.7651 S32: 1.3698 S33: -0.1973 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8767 -7.9878 7.2601 REMARK 3 T TENSOR REMARK 3 T11: 0.2198 T22: 0.1843 REMARK 3 T33: 0.1991 T12: 0.0988 REMARK 3 T13: -0.0189 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.4556 L22: 2.1211 REMARK 3 L33: 1.8988 L12: -0.8348 REMARK 3 L13: -0.9137 L23: 2.0279 REMARK 3 S TENSOR REMARK 3 S11: -0.1685 S12: -0.3472 S13: -0.3834 REMARK 3 S21: -0.0537 S22: 0.1771 S23: 0.1894 REMARK 3 S31: 0.3982 S32: 0.5396 S33: 0.0725 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0569 -12.5041 11.5110 REMARK 3 T TENSOR REMARK 3 T11: 0.2239 T22: 0.1412 REMARK 3 T33: 0.1479 T12: 0.0573 REMARK 3 T13: -0.0245 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 2.4121 L22: 3.3410 REMARK 3 L33: 4.7400 L12: -1.8508 REMARK 3 L13: -1.8973 L23: 2.6505 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: 0.0819 S13: -0.1478 REMARK 3 S21: 0.0359 S22: -0.0116 S23: 0.0900 REMARK 3 S31: 0.5021 S32: 0.0209 S33: 0.0136 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E5F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.0-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40174 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 56.571 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 1.26400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6E5D REMARK 200 REMARK 200 REMARK: NEEDLE-LIKE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, PH 6.5, 1.9 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.00200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.00200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.61950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.00200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.00200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.61950 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 40.00200 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 40.00200 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 29.61950 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 40.00200 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 40.00200 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 29.61950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 428 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 494 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 HIS A 3 REMARK 465 PHE A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 9 REMARK 465 THR A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 12 REMARK 465 LEU A 13 REMARK 465 SER A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 ALA A 18 REMARK 465 GLY A 19 REMARK 465 CYS A 20 REMARK 465 SER A 21 REMARK 465 PHE A 22 REMARK 465 ASN A 23 REMARK 465 ILE A 24 REMARK 465 LYS A 25 REMARK 465 THR A 26 REMARK 465 ASP A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 THR A 31 REMARK 465 THR A 32 REMARK 465 SER A 33 REMARK 465 PRO A 34 REMARK 465 THR A 35 REMARK 465 THR A 36 REMARK 465 THR A 37 REMARK 465 SER A 38 REMARK 465 PRO A 39 REMARK 465 THR A 40 REMARK 465 THR A 41 REMARK 465 SER A 42 REMARK 465 THR A 43 REMARK 465 THR A 44 REMARK 465 THR A 45 REMARK 465 THR A 46 REMARK 465 SER A 47 REMARK 465 ALA A 48 REMARK 465 THR A 49 REMARK 465 THR A 50 REMARK 465 SER A 51 REMARK 465 ALA A 52 REMARK 465 GLN A 53 REMARK 465 ALA A 54 REMARK 465 ALA A 55 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 117 64.71 -151.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L6T A 301 DBREF 6E5F A 1 228 UNP O53780 O53780_MYCTU 1 228 SEQRES 1 A 228 MET LYS HIS PHE THR ALA ALA VAL ALA THR VAL ALA LEU SEQRES 2 A 228 SER LEU ALA LEU ALA GLY CYS SER PHE ASN ILE LYS THR SEQRES 3 A 228 ASP SER ALA PRO THR THR SER PRO THR THR THR SER PRO SEQRES 4 A 228 THR THR SER THR THR THR THR SER ALA THR THR SER ALA SEQRES 5 A 228 GLN ALA ALA GLY PRO ASN TYR THR ILE ALA ASP TYR ILE SEQRES 6 A 228 ARG ASP ASN HIS ILE GLN GLU THR PRO VAL HIS HIS GLY SEQRES 7 A 228 ASP PRO GLY SER PRO THR ILE ASP LEU PRO VAL PRO ASP SEQRES 8 A 228 ASP TRP ARG LEU LEU PRO GLU SER SER ARG ALA PRO TYR SEQRES 9 A 228 GLY GLY ILE VAL TYR THR GLN PRO ALA ASP PRO ASN ASP SEQRES 10 A 228 PRO PRO THR ILE VAL ALA ILE LEU SER LYS LEU THR GLY SEQRES 11 A 228 ASP ILE ASP PRO ALA LYS VAL LEU GLN PHE ALA PRO GLY SEQRES 12 A 228 GLU LEU LYS ASN LEU PRO GLY PHE GLN GLY SER GLY ASP SEQRES 13 A 228 GLY SER ALA ALA THR LEU GLY GLY PHE SER ALA TRP GLN SEQRES 14 A 228 LEU GLY GLY SER TYR SER LYS ASN GLY LYS LEU ARG THR SEQRES 15 A 228 VAL ALA GLN LYS THR VAL VAL ILE PRO SER GLN GLY ALA SEQRES 16 A 228 VAL PHE VAL LEU GLN LEU ASN ALA ASP ALA LEU ASP ASP SEQRES 17 A 228 GLU THR MET THR LEU MET ASP ALA ALA ASN VAL ILE ASP SEQRES 18 A 228 GLU GLN THR THR ILE THR PRO HET L6T A 301 81 HETNAM L6T ALPHA-D-GLUCOPYRANOSYL 6-O-DODECYL-ALPHA-D- HETNAM 2 L6T GLUCOPYRANOSIDE FORMUL 2 L6T C24 H46 O11 FORMUL 3 HOH *107(H2 O) HELIX 1 AA1 THR A 60 ASP A 67 1 8 HELIX 2 AA2 ASP A 133 ALA A 141 1 9 HELIX 3 AA3 PRO A 142 ASN A 147 1 6 HELIX 4 AA4 GLU A 209 THR A 224 1 16 SHEET 1 AA1 6 ILE A 70 PRO A 74 0 SHEET 2 AA1 6 THR A 120 GLY A 130 -1 O LYS A 127 N THR A 73 SHEET 3 AA1 6 ALA A 195 LEU A 206 -1 O ASN A 202 N VAL A 122 SHEET 4 AA1 6 LYS A 179 SER A 192 -1 N ILE A 190 O PHE A 197 SHEET 5 AA1 6 PHE A 165 LYS A 176 -1 N TYR A 174 O ARG A 181 SHEET 6 AA1 6 GLN A 152 GLY A 153 -1 N GLN A 152 O SER A 173 SHEET 1 AA2 7 TRP A 93 LEU A 96 0 SHEET 2 AA2 7 GLY A 106 TYR A 109 -1 O GLY A 106 N LEU A 96 SHEET 3 AA2 7 THR A 120 GLY A 130 -1 O ILE A 121 N ILE A 107 SHEET 4 AA2 7 ALA A 195 LEU A 206 -1 O ASN A 202 N VAL A 122 SHEET 5 AA2 7 LYS A 179 SER A 192 -1 N ILE A 190 O PHE A 197 SHEET 6 AA2 7 PHE A 165 LYS A 176 -1 N TYR A 174 O ARG A 181 SHEET 7 AA2 7 SER A 158 LEU A 162 -1 N ALA A 160 O ALA A 167 SHEET 1 AA3 2 THR A 84 ASP A 86 0 SHEET 2 AA3 2 THR A 225 THR A 227 -1 O THR A 225 N ASP A 86 SITE 1 AC1 14 GLY A 130 ASP A 131 ILE A 132 GLN A 152 SITE 2 AC1 14 GLY A 153 SER A 154 GLN A 169 GLY A 171 SITE 3 AC1 14 GLY A 172 SER A 173 ALA A 184 ALA A 217 SITE 4 AC1 14 HOH A 431 HOH A 436 CRYST1 80.004 80.004 59.239 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012499 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012499 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016881 0.00000