HEADER SUGAR BINDING PROTEIN 23-JUL-18 6E60 TITLE BACTEROIDES OVATUS MIXED-LINKAGE GLUCAN UTILIZATION LOCUS (MLGUL) TITLE 2 SGBP-A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MIXED-LINKAGE GLUCAN UTILIZATION LOCUS (MLGUL) SGBP-B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BACTEROIDES OVATUS SURFACE GLYCAN BINDING PROTEIN A FROM THE COMPND 5 MIXED-LINKAGE GLUCAN UTILIZATION LOCUS; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 STRAIN: ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153; SOURCE 5 ATCC: 8483; SOURCE 6 GENE: BACOVA_02743; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TETRATRICOPEPTIDE REPEAT, OUTER MEMBRANE PROTEIN, BINDING PROTEIN, KEYWDS 2 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.TAMURA,B.R.GARDILL,H.BRUMER,F.VAN PETEGEM REVDAT 4 03-APR-24 6E60 1 REMARK REVDAT 3 13-MAR-24 6E60 1 LINK REVDAT 2 06-NOV-19 6E60 1 JRNL REVDAT 1 15-MAY-19 6E60 0 JRNL AUTH K.TAMURA,M.H.FOLEY,B.R.GARDILL,G.DEJEAN,M.SCHNIZLEIN, JRNL AUTH 2 C.M.E.BAHR,A.LOUISE CREAGH,F.VAN PETEGEM,N.M.KOROPATKIN, JRNL AUTH 3 H.BRUMER JRNL TITL SURFACE GLYCAN-BINDING PROTEINS ARE ESSENTIAL FOR CEREAL JRNL TITL 2 BETA-GLUCAN UTILIZATION BY THE HUMAN GUT SYMBIONT JRNL TITL 3 BACTEROIDES OVATUS. JRNL REF CELL.MOL.LIFE SCI. V. 76 4319 2019 JRNL REFN ESSN 1420-9071 JRNL PMID 31062073 JRNL DOI 10.1007/S00018-019-03115-3 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 77170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4062 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5450 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 287 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4268 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 597 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4507 ; 0.012 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 3858 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6139 ; 1.582 ; 1.662 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9076 ; 1.546 ; 1.645 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 569 ; 6.233 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 250 ;35.355 ;23.280 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 734 ;12.450 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.680 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 594 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5189 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 883 ; 0.019 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2204 ; 1.255 ; 1.355 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2203 ; 1.254 ; 1.354 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2770 ; 1.754 ; 2.028 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6E60 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81232 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 4.480 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.49 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: UNPUBLISHED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 0.1M BIS REMARK 280 -TRIS, 25% (W/V) PEG3350, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.63950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.47050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.68350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.47050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.63950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.68350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 LEU A 15 REMARK 465 VAL A 16 REMARK 465 PRO A 17 REMARK 465 ARG A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 541 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 541 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 82 -71.83 -85.09 REMARK 500 GLN A 103 -95.66 -136.81 REMARK 500 GLU A 117 16.13 54.99 REMARK 500 PHE A 148 -75.84 -148.10 REMARK 500 LYS A 189 -137.63 -105.88 REMARK 500 PRO A 323 40.47 -82.64 REMARK 500 ALA A 377 -85.79 -129.68 REMARK 500 ASP A 457 -111.17 -115.05 REMARK 500 ASN A 531 52.17 -146.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 326 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 492 O REMARK 620 2 ASP A 555 OD1 90.0 REMARK 620 3 GLU A 557 O 171.7 93.7 REMARK 620 4 HOH A 776 O 96.0 88.7 91.6 REMARK 620 5 HOH A 940 O 87.0 87.1 85.7 174.8 REMARK 620 6 HOH A1023 O 91.4 178.5 84.8 91.8 92.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 606 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 543 O REMARK 620 2 HOH A 703 O 98.3 REMARK 620 3 HOH A 752 O 83.2 163.0 REMARK 620 4 HOH A 778 O 93.1 82.3 80.7 REMARK 620 5 HOH A 834 O 171.9 87.9 89.4 82.5 REMARK 620 6 HOH A 918 O 84.9 99.2 97.8 177.7 99.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6DMF RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND DBREF 6E60 A 23 558 UNP A7LY27 A7LY27_BACO1 23 558 SEQADV 6E60 MET A 2 UNP A7LY27 INITIATING METHIONINE SEQADV 6E60 GLY A 3 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 SER A 4 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 SER A 5 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 HIS A 6 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 HIS A 7 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 HIS A 8 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 HIS A 9 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 HIS A 10 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 HIS A 11 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 SER A 12 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 SER A 13 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 GLY A 14 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 LEU A 15 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 VAL A 16 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 PRO A 17 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 ARG A 18 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 GLY A 19 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 SER A 20 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 HIS A 21 UNP A7LY27 EXPRESSION TAG SEQADV 6E60 MET A 22 UNP A7LY27 EXPRESSION TAG SEQRES 1 A 557 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 557 LEU VAL PRO ARG GLY SER HIS MET ASP GLU TYR MET GLU SEQRES 3 A 557 ASN MET ASN THR ASP PRO SER LYS ALA ALA THR ILE ASP SEQRES 4 A 557 PRO ASN ALA GLN LEU THR THR ALA GLN LEU GLN THR TYR SEQRES 5 A 557 GLY ASP LEU SER MET MET GLU ILE TYR ARG ASN TYR HIS SEQRES 6 A 557 TYR ALA PHE THR GLN GLN LEU MET GLY CYS TRP ASN THR SEQRES 7 A 557 THR ASN TYR GLY GLY ARG HIS THR LEU ASP ASN ASN GLU SEQRES 8 A 557 MET SER ARG ILE TRP THR SER PHE TYR THR GLN SER LEU SEQRES 9 A 557 LYS ASN ILE ILE ASP ALA GLN TYR ARG THR ALA GLU ASP SEQRES 10 A 557 ALA GLU LYS VAL ASN ILE ASN SER VAL LEU ARG ILE TYR SEQRES 11 A 557 ARG VAL TYR LEU MET SER ILE ILE THR ASP THR TYR GLY SEQRES 12 A 557 ASP ALA PRO PHE SER GLU ALA GLY LEU GLY PHE LEU GLU SEQRES 13 A 557 GLY LYS PHE ASN PRO LYS TYR ASP LYS GLN GLU ASP ILE SEQRES 14 A 557 TYR ASN ALA PHE PHE LEU GLU LEU GLU ASP ALA VAL ASN SEQRES 15 A 557 LYS ILE ASP PRO THR LYS ASP LYS VAL THR GLY ASP LEU SEQRES 16 A 557 ILE TYR ALA GLY ASP VAL THR LYS TRP GLN GLN LEU ALA SEQRES 17 A 557 ASN SER LEU ARG LEU ARG PHE ALA MET ARG ILE SER SER SEQRES 18 A 557 VAL ASN PRO THR LYS ALA GLN THR GLU PHE GLU ASN ALA SEQRES 19 A 557 LEU ALA ALA ASN GLY GLY VAL ILE THR ASP ALA SER SER SEQRES 20 A 557 ASP ALA LEU ILE LYS TYR MET THR ILE ALA PHE SER PHE SEQRES 21 A 557 GLY GLN GLU ALA TYR SER ASP TYR ARG GLY ASN SER LEU SEQRES 22 A 557 SER GLN LEU LEU PHE GLY ASN ASP PRO ALA ASN ASN PRO SEQRES 23 A 557 SER TYR LEU CYS SER THR PHE PHE ASN GLN LEU TYR ASN SEQRES 24 A 557 SER GLY ASP PRO ARG THR PHE LYS ILE SER ARG CYS TYR SEQRES 25 A 557 TYR ASP GLY LEU MET SER ALA THR SER PRO ASP ASN ARG SEQRES 26 A 557 VAL ASP ILE THR GLN GLU MET ILE GLU LYS GLY ILE ALA SEQRES 27 A 557 PHE SER PRO ARG ASP PRO GLY ALA TYR SER TRP GLU PRO SEQRES 28 A 557 TRP PRO THR GLY TYR ASP SER ASP ILE CYS ALA GLU LEU SEQRES 29 A 557 ALA VAL ASN ASN PRO SER VAL THR ALA THR MET ALA ARG SEQRES 30 A 557 GLU VAL GLU PRO LYS LEU ALA ASN ASN PHE LEU LYS SER SEQRES 31 A 557 ASP ASN PRO GLY VAL VAL MET THR SER ALA GLU VAL LYS SEQRES 32 A 557 PHE LEU MET ALA GLU ALA THR VAL LYS LYS TRP ASN VAL SEQRES 33 A 557 GLY SER VAL SER ALA GLU ASP LEU TYR LYS GLN GLY VAL SEQRES 34 A 557 ARG ALA ALA ILE ASP PHE LEU THR ASP ASN TYR GLY CYS SEQRES 35 A 557 THR ALA THR THR ASP ALA GLU PHE ASP ALA PHE ILE GLN SEQRES 36 A 557 ASP LYS GLY ALA PHE GLY HIS THR ASP ASN GLN LYS LEU SEQRES 37 A 557 GLU ALA ILE ASN THR GLN ALA TRP ILE LEU HIS PHE THR SEQRES 38 A 557 ASN PRO ALA GLU CYS TRP ALA ASN VAL ARG ARG SER GLY SEQRES 39 A 557 TYR PRO LYS LEU LYS SER PRO ALA GLU TYR GLY PHE GLY SEQRES 40 A 557 GLN TYR LEU THR GLY GLY THR GLU ILE PRO VAL ARG LEU SEQRES 41 A 557 CYS TYR PRO VAL LEU GLU SER SER TYR ASN LYS LYS SER SEQRES 42 A 557 TYR ASN GLU ALA ILE GLU ARG MET GLY GLY THR ASP ASN SEQRES 43 A 557 TRP HIS SER LEU LEU TRP TRP ASP THR GLU ASN HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET MG A 605 1 HET MG A 606 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 4(C2 H6 O2) FORMUL 6 MG 2(MG 2+) FORMUL 8 HOH *597(H2 O) HELIX 1 AA1 HIS A 21 ASN A 30 1 10 HELIX 2 AA2 ASP A 40 ASP A 55 1 16 HELIX 3 AA3 ASP A 55 TYR A 65 1 11 HELIX 4 AA4 TYR A 65 THR A 70 1 6 HELIX 5 AA5 CYS A 76 TYR A 82 1 7 HELIX 6 AA6 ASP A 89 SER A 94 1 6 HELIX 7 AA7 SER A 94 GLN A 103 1 10 HELIX 8 AA8 GLN A 103 ALA A 116 1 14 HELIX 9 AA9 ASP A 118 GLU A 120 5 3 HELIX 10 AB1 LYS A 121 GLY A 144 1 24 HELIX 11 AB2 LEU A 153 GLY A 158 1 6 HELIX 12 AB3 LYS A 166 ILE A 185 1 20 HELIX 13 AB4 ASP A 201 ILE A 220 1 20 HELIX 14 AB5 ASN A 224 ALA A 237 1 14 HELIX 15 AB6 ASP A 245 ASP A 249 5 5 HELIX 16 AB7 GLY A 262 ASP A 268 5 7 HELIX 17 AB8 ASN A 272 GLY A 280 1 9 HELIX 18 AB9 CYS A 291 SER A 301 1 11 HELIX 19 AC1 ARG A 305 ILE A 309 1 5 HELIX 20 AC2 ILE A 329 GLY A 337 1 9 HELIX 21 AC3 SER A 359 VAL A 367 1 9 HELIX 22 AC4 ALA A 377 GLU A 381 5 5 HELIX 23 AC5 ASN A 386 LEU A 389 5 4 HELIX 24 AC6 THR A 399 LYS A 413 1 15 HELIX 25 AC7 SER A 421 GLY A 442 1 22 HELIX 26 AC8 THR A 447 ASP A 457 1 11 HELIX 27 AC9 THR A 464 HIS A 480 1 17 HELIX 28 AD1 ASN A 483 GLY A 495 1 13 HELIX 29 AD2 SER A 501 GLY A 506 5 6 HELIX 30 AD3 PHE A 507 LEU A 511 5 5 HELIX 31 AD4 VAL A 525 ASN A 531 1 7 HELIX 32 AD5 ASN A 531 MET A 542 1 12 SHEET 1 AA1 2 ALA A 250 ILE A 252 0 SHEET 2 AA1 2 GLY A 395 MET A 398 -1 O MET A 398 N ALA A 250 SHEET 1 AA2 2 SER A 310 ARG A 311 0 SHEET 2 AA2 2 LYS A 383 LEU A 384 -1 O LYS A 383 N ARG A 311 SHEET 1 AA3 2 TYR A 313 TYR A 314 0 SHEET 2 AA3 2 VAL A 327 ASP A 328 -1 O VAL A 327 N TYR A 314 SHEET 1 AA4 2 TYR A 357 ASP A 358 0 SHEET 2 AA4 2 THR A 375 MET A 376 -1 O MET A 376 N TYR A 357 LINK O ARG A 492 MG MG A 605 1555 1555 2.00 LINK O GLY A 543 MG MG A 606 1555 1555 2.22 LINK OD1 ASP A 555 MG MG A 605 1555 1555 1.99 LINK O GLU A 557 MG MG A 605 1555 1555 2.13 LINK MG MG A 605 O HOH A 776 1555 1555 2.06 LINK MG MG A 605 O HOH A 940 1555 1555 2.01 LINK MG MG A 605 O HOH A1023 1555 1555 2.08 LINK MG MG A 606 O HOH A 703 1555 1555 2.17 LINK MG MG A 606 O HOH A 752 1555 1655 2.19 LINK MG MG A 606 O HOH A 778 1555 1555 2.17 LINK MG MG A 606 O HOH A 834 1555 1655 2.21 LINK MG MG A 606 O HOH A 918 1555 1555 1.81 CISPEP 1 GLU A 351 PRO A 352 0 3.81 CISPEP 2 TYR A 496 PRO A 497 0 -11.37 SITE 1 AC1 6 LEU A 437 ILE A 478 LEU A 479 PHE A 481 SITE 2 AC1 6 THR A 482 HOH A 861 SITE 1 AC2 1 ARG A 311 SITE 1 AC3 5 MET A 255 PRO A 370 LYS A 532 HOH A 728 SITE 2 AC3 5 HOH A 886 SITE 1 AC4 8 GLN A 44 THR A 47 ALA A 48 GLN A 51 SITE 2 AC4 8 GLN A 103 SER A 104 ASN A 107 HOH A 772 SITE 1 AC5 6 ARG A 492 ASP A 555 GLU A 557 HOH A 776 SITE 2 AC5 6 HOH A 940 HOH A1023 SITE 1 AC6 7 ASP A 249 GLY A 543 HOH A 703 HOH A 752 SITE 2 AC6 7 HOH A 778 HOH A 834 HOH A 918 CRYST1 47.279 89.367 120.941 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021151 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008268 0.00000