HEADER SIGNALING PROTEIN 24-JUL-18 6E6F TITLE KRAS G13D BOUND TO GPPNHP (K13GNP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-166; COMPND 5 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS ONCOGENE, RAS, P21, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.W.JOHNSON,C.MATTOS REVDAT 4 13-MAR-24 6E6F 1 REMARK REVDAT 3 27-NOV-19 6E6F 1 REMARK REVDAT 2 04-SEP-19 6E6F 1 AUTHOR JRNL REMARK REVDAT 1 31-JUL-19 6E6F 0 JRNL AUTH C.W.JOHNSON,Y.J.LIN,D.REID,J.PARKER,S.PAVLOPOULOS, JRNL AUTH 2 P.DISCHINGER,C.GRAVEEL,A.J.AGUIRRE,M.STEENSMA,K.M.HAIGIS, JRNL AUTH 3 C.MATTOS JRNL TITL ISOFORM-SPECIFIC DESTABILIZATION OF THE ACTIVE SITE REVEALS JRNL TITL 2 A MOLECULAR MECHANISM OF INTRINSIC ACTIVATION OF KRAS G13D. JRNL REF CELL REP V. 28 1538 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 31390567 JRNL DOI 10.1016/J.CELREP.2019.07.026 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.5 REMARK 3 NUMBER OF REFLECTIONS : 4524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.830 REMARK 3 FREE R VALUE TEST SET COUNT : 453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2540 - 5.8123 0.92 1472 154 0.1983 0.2626 REMARK 3 2 5.8123 - 4.6147 0.92 1453 156 0.1883 0.2773 REMARK 3 3 4.6147 - 4.0317 0.87 1358 149 0.1520 0.2039 REMARK 3 4 4.0317 - 3.6632 0.72 1160 129 0.1662 0.2758 REMARK 3 5 3.6632 - 3.4008 0.60 944 108 0.1861 0.2597 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2313 REMARK 3 ANGLE : 1.375 3167 REMARK 3 CHIRALITY : 0.071 380 REMARK 3 PLANARITY : 0.007 402 REMARK 3 DIHEDRAL : 19.294 1361 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E6F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 173.15 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4526 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 46.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.41200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MM SODIUM ACETATE, 91 MM SODIUM REMARK 280 CITRATE TRIBASIC, 183 MM AMMONIUM ACETATE, 27.2% PEG 4000, 4.3% REMARK 280 STABILIZATION BUFFER (20 MM HEPES, 50 MM NACL, 20 MM MGCL2, AT REMARK 280 PH 7.5), CRYSTALS GROWN 1UL BY 1UL MOTHER LIQUOR TO PROTEIN REMARK 280 (22MG/ML), NO CRYOPROTECTANT WAS USED FOR DIFFRACTION, PH 5.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.24300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.54800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.24300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.54800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 59 REMARK 465 GLY A 60 REMARK 465 GLN A 61 REMARK 465 GLU A 62 REMARK 465 GLU A 63 REMARK 465 TYR A 64 REMARK 465 SER A 65 REMARK 465 ALA A 66 REMARK 465 MET A 67 REMARK 465 ARG A 68 REMARK 465 ASP A 69 REMARK 465 GLN A 70 REMARK 465 VAL B 29 REMARK 465 ASP B 30 REMARK 465 GLU B 31 REMARK 465 TYR B 32 REMARK 465 ASP B 33 REMARK 465 PRO B 34 REMARK 465 THR B 35 REMARK 465 ILE B 36 REMARK 465 GLU B 37 REMARK 465 ASP B 38 REMARK 465 SER B 39 REMARK 465 ALA B 59 REMARK 465 GLY B 60 REMARK 465 GLN B 61 REMARK 465 GLU B 62 REMARK 465 GLU B 63 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CE NZ REMARK 470 ASN A 26 CG OD1 ND2 REMARK 470 THR A 35 OG1 CG2 REMARK 470 ILE A 36 CG1 CG2 CD1 REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 103 CG1 CG2 REMARK 470 ASP A 105 CG OD1 OD2 REMARK 470 SER A 106 OG REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 SER A 122 OG REMARK 470 ASP A 126 CG OD1 OD2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 GLN A 129 CG CD OE1 NE2 REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 150 CG CD OE1 NE2 REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 LYS B 16 CG CD CE NZ REMARK 470 GLN B 22 CG CD OE1 NE2 REMARK 470 LEU B 23 CG CD1 CD2 REMARK 470 HIS B 27 CG ND1 CD2 CE1 NE2 REMARK 470 PHE B 28 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 40 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 VAL B 45 CG1 CG2 REMARK 470 LEU B 56 CG CD1 CD2 REMARK 470 TYR B 64 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET B 67 CG SD CE REMARK 470 ASP B 69 CG OD1 OD2 REMARK 470 GLN B 70 CG CD OE1 NE2 REMARK 470 TYR B 71 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 THR B 87 OG1 CG2 REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 SER B 89 OG REMARK 470 GLU B 91 CG CD OE1 OE2 REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 ASP B 105 CG OD1 OD2 REMARK 470 SER B 106 OG REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 THR B 127 OG1 CG2 REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 GLN B 129 CG CD OE1 NE2 REMARK 470 ASP B 132 CG OD1 OD2 REMARK 470 LEU B 133 CG CD1 CD2 REMARK 470 ARG B 135 CG CD NE CZ NH1 NH2 REMARK 470 SER B 136 OG REMARK 470 ILE B 142 CG1 CG2 CD1 REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 ARG B 149 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 154 CG OD1 OD2 REMARK 470 GLU B 162 CG CD OE1 OE2 REMARK 470 ARG B 164 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 165 CG CD CE NZ REMARK 470 HIS B 166 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 22 O ALA A 146 1.99 REMARK 500 O ASN B 85 OG1 THR B 124 2.03 REMARK 500 O ARG A 73 NZ LYS A 104 2.19 REMARK 500 NH1 ARG A 97 O TYR A 137 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 53 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 LEU B 120 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 34 117.14 -18.83 REMARK 500 THR A 35 121.80 -5.65 REMARK 500 ILE A 36 -74.21 -99.25 REMARK 500 SER A 39 62.48 -154.17 REMARK 500 ARG A 102 -75.01 -67.17 REMARK 500 VAL A 103 39.23 -68.95 REMARK 500 LYS A 104 11.84 -151.90 REMARK 500 ASP A 105 39.43 33.56 REMARK 500 PRO A 110 125.17 -36.93 REMARK 500 LYS A 117 59.18 72.71 REMARK 500 ARG A 149 -12.32 64.18 REMARK 500 ASP B 13 17.29 58.79 REMARK 500 ALA B 18 -44.37 -160.97 REMARK 500 LEU B 23 -46.12 -160.17 REMARK 500 GLN B 25 -24.18 -150.25 REMARK 500 ASN B 26 98.98 53.81 REMARK 500 HIS B 27 -150.83 -169.54 REMARK 500 ILE B 46 84.16 50.11 REMARK 500 GLN B 99 2.43 -62.03 REMARK 500 GLN B 99 9.09 -67.76 REMARK 500 ILE B 100 -61.54 -102.01 REMARK 500 SER B 106 -179.11 -174.13 REMARK 500 CYS B 118 0.13 -53.50 REMARK 500 SER B 122 77.22 -59.12 REMARK 500 LYS B 147 -77.59 -104.45 REMARK 500 THR B 148 108.37 -57.11 REMARK 500 ARG B 149 98.02 -62.22 REMARK 500 VAL B 152 -79.16 -31.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GNP A 201 O2G 118.2 REMARK 620 3 GNP A 201 O2B 88.8 67.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6E6C RELATED DB: PDB REMARK 900 RELATED ID: 6E6P RELATED DB: PDB REMARK 900 RELATED ID: 6E6H RELATED DB: PDB REMARK 900 RELATED ID: 6E6G RELATED DB: PDB REMARK 900 RELATED ID: 6DZH RELATED DB: PDB DBREF 6E6F A 1 166 UNP P01116 RASK_HUMAN 1 166 DBREF 6E6F B 1 166 UNP P01116 RASK_HUMAN 1 166 SEQADV 6E6F ASP A 13 UNP P01116 GLY 13 ENGINEERED MUTATION SEQADV 6E6F ASP B 13 UNP P01116 GLY 13 ENGINEERED MUTATION SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY ASP SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG LYS HIS SEQRES 1 B 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY ASP SEQRES 2 B 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 B 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 B 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 B 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 B 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 B 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 B 166 ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 B 166 ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 B 166 CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN ALA SEQRES 11 B 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE GLU SEQRES 12 B 166 THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA PHE SEQRES 13 B 166 TYR THR LEU VAL ARG GLU ILE ARG LYS HIS HET GNP A 201 32 HET MG A 202 1 HET GNP B 201 32 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 GNP 2(C10 H17 N6 O13 P3) FORMUL 4 MG MG 2+ FORMUL 6 HOH *8(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 TYR A 71 GLY A 75 5 5 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 LYS A 101 1 10 HELIX 5 AA5 ARG A 102 ASP A 105 5 4 HELIX 6 AA6 ASP A 126 TYR A 137 1 12 HELIX 7 AA7 GLY A 151 LYS A 165 1 15 HELIX 8 AA8 GLY B 15 THR B 20 1 6 HELIX 9 AA9 ALA B 66 GLY B 75 1 10 HELIX 10 AB1 ASN B 86 ASP B 92 1 7 HELIX 11 AB2 ASP B 92 ARG B 102 1 11 HELIX 12 AB3 ASP B 126 TYR B 137 1 12 HELIX 13 AB4 GLY B 151 HIS B 166 1 16 SHEET 1 AA1 6 SER A 39 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44 SHEET 3 AA1 6 GLU A 3 GLY A 10 1 N VAL A 8 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O VAL A 112 N CYS A 80 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N GLY A 115 SHEET 1 AA2 6 LYS B 42 VAL B 44 0 SHEET 2 AA2 6 CYS B 51 ASP B 57 -1 O CYS B 51 N VAL B 44 SHEET 3 AA2 6 GLU B 3 GLY B 10 1 N TYR B 4 O LEU B 52 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O VAL B 81 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 LINK OG SER A 17 MG MG A 202 1555 1555 2.04 LINK O2G GNP A 201 MG MG A 202 1555 1555 2.58 LINK O2B GNP A 201 MG MG A 202 1555 1555 2.18 SITE 1 AC1 19 GLY A 12 ASP A 13 VAL A 14 GLY A 15 SITE 2 AC1 19 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 19 VAL A 29 ASP A 30 TYR A 32 ASN A 116 SITE 4 AC1 19 LYS A 117 ASP A 119 LEU A 120 SER A 145 SITE 5 AC1 19 ALA A 146 LYS A 147 MG A 202 SITE 1 AC2 3 SER A 17 ASP A 57 GNP A 201 SITE 1 AC3 12 ASP B 13 VAL B 14 GLY B 15 LYS B 16 SITE 2 AC3 12 SER B 17 ALA B 18 ASN B 116 LYS B 117 SITE 3 AC3 12 ASP B 119 LEU B 120 SER B 145 ALA B 146 CRYST1 114.486 39.096 89.319 90.00 124.37 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008735 0.000000 0.005974 0.00000 SCALE2 0.000000 0.025578 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013564 0.00000 TER 1160 HIS A 166 TER 2216 HIS B 166 HETATM 2217 PG GNP A 201 -48.412 -47.561 -38.409 1.00 51.08 P HETATM 2218 O1G GNP A 201 -47.144 -47.954 -39.134 1.00 37.11 O HETATM 2219 O2G GNP A 201 -49.010 -48.594 -37.459 1.00 41.54 O HETATM 2220 O3G GNP A 201 -48.260 -46.299 -37.582 1.00 44.52 O HETATM 2221 N3B GNP A 201 -49.458 -47.218 -39.565 1.00 33.60 N HETATM 2222 PB GNP A 201 -50.245 -48.347 -40.342 1.00 23.17 P HETATM 2223 O1B GNP A 201 -49.433 -48.933 -41.426 1.00 24.03 O HETATM 2224 O2B GNP A 201 -50.826 -49.243 -39.311 1.00 32.37 O HETATM 2225 O3A GNP A 201 -51.420 -47.658 -40.997 1.00 30.08 O HETATM 2226 PA GNP A 201 -52.791 -47.623 -40.337 1.00 29.88 P HETATM 2227 O1A GNP A 201 -53.445 -48.948 -40.520 1.00 25.78 O HETATM 2228 O2A GNP A 201 -52.663 -47.089 -38.961 1.00 33.52 O HETATM 2229 O5' GNP A 201 -53.567 -46.533 -41.173 1.00 22.42 O HETATM 2230 C5' GNP A 201 -52.874 -45.385 -41.598 1.00 23.74 C HETATM 2231 C4' GNP A 201 -53.923 -44.395 -41.980 1.00 25.90 C HETATM 2232 O4' GNP A 201 -54.174 -44.521 -43.399 1.00 27.98 O HETATM 2233 C3' GNP A 201 -55.207 -44.746 -41.233 1.00 28.14 C HETATM 2234 O3' GNP A 201 -55.677 -43.645 -40.477 1.00 31.02 O HETATM 2235 C2' GNP A 201 -56.205 -45.177 -42.313 1.00 30.44 C HETATM 2236 O2' GNP A 201 -57.488 -44.594 -42.181 1.00 26.29 O HETATM 2237 C1' GNP A 201 -55.574 -44.705 -43.621 1.00 34.48 C HETATM 2238 N9 GNP A 201 -55.850 -45.651 -44.713 1.00 34.54 N HETATM 2239 C8 GNP A 201 -55.481 -46.971 -44.781 1.00 32.53 C HETATM 2240 N7 GNP A 201 -55.858 -47.569 -45.870 1.00 29.02 N HETATM 2241 C5 GNP A 201 -56.535 -46.588 -46.575 1.00 30.09 C HETATM 2242 C6 GNP A 201 -57.177 -46.646 -47.841 1.00 39.05 C HETATM 2243 O6 GNP A 201 -57.272 -47.619 -48.613 1.00 45.05 O HETATM 2244 N1 GNP A 201 -57.749 -45.433 -48.214 1.00 33.23 N HETATM 2245 C2 GNP A 201 -57.695 -44.313 -47.442 1.00 34.96 C HETATM 2246 N2 GNP A 201 -58.299 -43.235 -47.940 1.00 37.08 N HETATM 2247 N3 GNP A 201 -57.096 -44.239 -46.258 1.00 38.62 N HETATM 2248 C4 GNP A 201 -56.542 -45.410 -45.881 1.00 31.82 C HETATM 2249 MG MG A 202 -49.862 -50.895 -38.263 1.00 35.11 MG HETATM 2250 PG GNP B 201 -49.651 -58.281 -89.477 1.00 88.48 P HETATM 2251 O1G GNP B 201 -49.499 -58.026 -90.969 1.00 72.33 O HETATM 2252 O2G GNP B 201 -48.689 -59.310 -88.900 1.00 61.02 O HETATM 2253 O3G GNP B 201 -49.609 -57.050 -88.591 1.00 68.30 O HETATM 2254 N3B GNP B 201 -51.116 -58.799 -89.211 1.00 53.71 N HETATM 2255 PB GNP B 201 -51.506 -59.254 -87.754 1.00 44.94 P HETATM 2256 O1B GNP B 201 -51.357 -60.725 -87.617 1.00 38.09 O HETATM 2257 O2B GNP B 201 -50.773 -58.431 -86.768 1.00 51.53 O HETATM 2258 O3A GNP B 201 -52.950 -58.804 -87.605 1.00 52.26 O HETATM 2259 PA GNP B 201 -53.289 -57.512 -86.859 1.00 51.26 P HETATM 2260 O1A GNP B 201 -52.365 -56.442 -87.311 1.00 53.50 O HETATM 2261 O2A GNP B 201 -53.366 -57.828 -85.408 1.00 33.51 O HETATM 2262 O5' GNP B 201 -54.731 -57.066 -87.345 1.00 48.14 O HETATM 2263 C5' GNP B 201 -55.029 -57.138 -88.743 1.00 49.03 C HETATM 2264 C4' GNP B 201 -56.240 -56.321 -89.208 1.00 59.52 C HETATM 2265 O4' GNP B 201 -57.475 -57.052 -88.974 1.00 52.30 O HETATM 2266 C3' GNP B 201 -56.442 -54.928 -88.594 1.00 68.25 C HETATM 2267 O3' GNP B 201 -56.973 -53.964 -89.527 1.00 73.10 O HETATM 2268 C2' GNP B 201 -57.440 -55.217 -87.479 1.00 54.51 C HETATM 2269 O2' GNP B 201 -58.178 -54.064 -87.110 1.00 57.05 O HETATM 2270 C1' GNP B 201 -58.284 -56.343 -88.074 1.00 42.54 C HETATM 2271 N9 GNP B 201 -58.548 -57.288 -87.025 1.00 38.53 N HETATM 2272 C8 GNP B 201 -57.619 -57.787 -86.165 1.00 42.32 C HETATM 2273 N7 GNP B 201 -58.133 -58.618 -85.303 1.00 47.42 N HETATM 2274 C5 GNP B 201 -59.483 -58.671 -85.614 1.00 41.16 C HETATM 2275 C6 GNP B 201 -60.537 -59.397 -85.013 1.00 35.90 C HETATM 2276 O6 GNP B 201 -60.480 -60.170 -84.049 1.00 35.75 O HETATM 2277 N1 GNP B 201 -61.751 -59.143 -85.639 1.00 30.49 N HETATM 2278 C2 GNP B 201 -61.908 -58.306 -86.712 1.00 31.28 C HETATM 2279 N2 GNP B 201 -63.141 -58.183 -87.196 1.00 33.59 N HETATM 2280 N3 GNP B 201 -60.934 -57.619 -87.288 1.00 43.03 N HETATM 2281 C4 GNP B 201 -59.748 -57.848 -86.682 1.00 44.06 C HETATM 2282 O HOH A 301 -32.775 -53.976 -54.515 1.00 39.19 O HETATM 2283 O HOH A 302 -45.623 -57.248 -63.244 1.00 33.63 O HETATM 2284 O HOH A 303 -65.872 -53.842 -46.880 1.00 22.65 O HETATM 2285 O HOH A 304 -45.837 -56.754 -33.246 1.00 40.82 O HETATM 2286 O HOH B 301 -66.807 -60.190 -74.660 1.00 41.84 O HETATM 2287 O HOH B 302 -50.713 -83.061 -76.248 1.00 43.14 O HETATM 2288 O HOH B 303 -46.493 -60.633 -91.714 1.00 21.44 O HETATM 2289 O HOH B 304 -39.080 -61.609 -90.029 1.00 13.07 O CONECT 119 2249 CONECT 2217 2218 2219 2220 2221 CONECT 2218 2217 CONECT 2219 2217 2249 CONECT 2220 2217 CONECT 2221 2217 2222 CONECT 2222 2221 2223 2224 2225 CONECT 2223 2222 CONECT 2224 2222 2249 CONECT 2225 2222 2226 CONECT 2226 2225 2227 2228 2229 CONECT 2227 2226 CONECT 2228 2226 CONECT 2229 2226 2230 CONECT 2230 2229 2231 CONECT 2231 2230 2232 2233 CONECT 2232 2231 2237 CONECT 2233 2231 2234 2235 CONECT 2234 2233 CONECT 2235 2233 2236 2237 CONECT 2236 2235 CONECT 2237 2232 2235 2238 CONECT 2238 2237 2239 2248 CONECT 2239 2238 2240 CONECT 2240 2239 2241 CONECT 2241 2240 2242 2248 CONECT 2242 2241 2243 2244 CONECT 2243 2242 CONECT 2244 2242 2245 CONECT 2245 2244 2246 2247 CONECT 2246 2245 CONECT 2247 2245 2248 CONECT 2248 2238 2241 2247 CONECT 2249 119 2219 2224 CONECT 2250 2251 2252 2253 2254 CONECT 2251 2250 CONECT 2252 2250 CONECT 2253 2250 CONECT 2254 2250 2255 CONECT 2255 2254 2256 2257 2258 CONECT 2256 2255 CONECT 2257 2255 CONECT 2258 2255 2259 CONECT 2259 2258 2260 2261 2262 CONECT 2260 2259 CONECT 2261 2259 CONECT 2262 2259 2263 CONECT 2263 2262 2264 CONECT 2264 2263 2265 2266 CONECT 2265 2264 2270 CONECT 2266 2264 2267 2268 CONECT 2267 2266 CONECT 2268 2266 2269 2270 CONECT 2269 2268 CONECT 2270 2265 2268 2271 CONECT 2271 2270 2272 2281 CONECT 2272 2271 2273 CONECT 2273 2272 2274 CONECT 2274 2273 2275 2281 CONECT 2275 2274 2276 2277 CONECT 2276 2275 CONECT 2277 2275 2278 CONECT 2278 2277 2279 2280 CONECT 2279 2278 CONECT 2280 2278 2281 CONECT 2281 2271 2274 2280 MASTER 417 0 3 13 12 0 9 6 2281 2 66 26 END