HEADER SIGNALING PROTEIN 25-JUL-18 6E6P TITLE HRAS G13D BOUND TO GPPNHP (HA,B,C13GNP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 1-166; COMPND 5 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 6 EC: 3.6.5.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS ONCOGENE, RAS, P21, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.W.JOHNSON,C.MATTOS REVDAT 4 13-MAR-24 6E6P 1 REMARK LINK REVDAT 3 27-NOV-19 6E6P 1 REMARK REVDAT 2 04-SEP-19 6E6P 1 AUTHOR JRNL REMARK REVDAT 1 31-JUL-19 6E6P 0 JRNL AUTH C.W.JOHNSON,Y.J.LIN,D.REID,J.PARKER,S.PAVLOPOULOS, JRNL AUTH 2 P.DISCHINGER,C.GRAVEEL,A.J.AGUIRRE,M.STEENSMA,K.M.HAIGIS, JRNL AUTH 3 C.MATTOS JRNL TITL ISOFORM-SPECIFIC DESTABILIZATION OF THE ACTIVE SITE REVEALS JRNL TITL 2 A MOLECULAR MECHANISM OF INTRINSIC ACTIVATION OF KRAS G13D. JRNL REF CELL REP V. 28 1538 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 31390567 JRNL DOI 10.1016/J.CELREP.2019.07.026 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 32598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E6P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235523. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32621 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.62200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 152 MM CALCIUM ACETATE, 22.8% PEG REMARK 280 3350, 9.5% STABILIZATION BUFFER (20 MM HEPES PH 7.5, 50 MM NACL, REMARK 280 20 MM MGCL2), CRYSTALS WERE GROWN IN 2UL BY 2 UL DROPS OF MOTHER REMARK 280 LIQUOR TO PROTEIN (22 MG/ML), CRYOPROTECTANT: 70% GLYCEROL AND REMARK 280 30% MOTHER LIQUOR, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.82450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.36100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.78350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.36100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.82450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.78350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 60 REMARK 465 GLN A 61 REMARK 465 GLU A 62 REMARK 465 GLU A 63 REMARK 465 TYR A 64 REMARK 465 SER A 65 REMARK 465 ALA A 66 REMARK 465 GLN B 61 REMARK 465 GLU B 62 REMARK 465 GLU B 63 REMARK 465 TYR B 64 REMARK 465 SER B 65 REMARK 465 ALA B 66 REMARK 465 MET B 67 REMARK 465 ARG B 68 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 ILE A 36 CG1 CG2 CD1 REMARK 470 MET A 67 CG SD CE REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 70 CG CD OE1 NE2 REMARK 470 LYS A 88 CE NZ REMARK 470 GLN A 95 CG CD OE1 NE2 REMARK 470 GLN A 99 CD OE1 NE2 REMARK 470 ARG A 128 NE CZ NH1 NH2 REMARK 470 LYS B 5 CE NZ REMARK 470 ILE B 36 CG1 CG2 CD1 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 ASP B 69 CG OD1 OD2 REMARK 470 GLN B 70 CG CD OE1 NE2 REMARK 470 TYR B 71 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 95 CG CD OE1 NE2 REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 ARG B 128 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 31 CG CD OE1 OE2 REMARK 470 TYR C 32 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 37 CG CD OE1 OE2 REMARK 470 GLN C 61 CG CD OE1 NE2 REMARK 470 GLU C 62 CG CD OE1 OE2 REMARK 470 GLU C 63 CG CD OE1 OE2 REMARK 470 SER C 65 OG REMARK 470 TYR C 71 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 88 CE NZ REMARK 470 VAL C 103 CG1 CG2 REMARK 470 ASP C 108 CG OD1 OD2 REMARK 470 GLU C 126 CG CD OE1 OE2 REMARK 470 ARG C 128 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 165 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N3 GNP A 201 O1 GOL A 205 1.31 REMARK 500 C2 GNP A 201 O1 GOL A 205 2.08 REMARK 500 NE2 GLN B 43 O HOH B 301 2.12 REMARK 500 O HOH C 351 O HOH C 381 2.15 REMARK 500 NH2 ARG C 135 O HOH C 301 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 -157.75 -113.24 REMARK 500 TYR A 32 62.52 -112.08 REMARK 500 LYS A 117 34.28 73.97 REMARK 500 ARG A 149 -4.39 77.38 REMARK 500 ASP B 30 -110.42 -105.44 REMARK 500 PRO B 34 30.04 -97.13 REMARK 500 ILE B 36 -168.97 -160.06 REMARK 500 GLU B 37 80.18 -66.29 REMARK 500 LYS B 117 34.81 73.17 REMARK 500 LYS C 117 34.61 70.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 3 OE1 REMARK 620 2 GLU A 3 OE2 50.5 REMARK 620 3 HOH A 351 O 129.4 79.1 REMARK 620 4 HOH A 354 O 86.8 83.4 81.9 REMARK 620 5 HOH B 309 O 92.2 77.0 79.6 155.2 REMARK 620 6 HOH B 341 O 93.5 133.2 123.4 63.2 141.5 REMARK 620 7 HOH B 349 O 79.5 112.2 132.7 143.0 60.5 83.3 REMARK 620 8 HOH B 362 O 161.4 147.8 69.3 97.6 91.2 72.7 86.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GNP A 201 O3G 172.5 REMARK 620 3 GNP A 201 O2B 84.3 91.0 REMARK 620 4 HOH A 313 O 82.4 93.0 104.2 REMARK 620 5 HOH A 321 O 88.2 97.0 81.9 168.2 REMARK 620 6 HOH A 347 O 88.0 97.7 166.3 86.0 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GNP B 201 O1G 175.6 REMARK 620 3 GNP B 201 O1B 93.9 89.9 REMARK 620 4 HOH B 315 O 81.1 96.5 97.8 REMARK 620 5 HOH B 326 O 93.5 89.1 81.2 174.4 REMARK 620 6 HOH B 351 O 88.2 88.5 165.9 96.3 84.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 3 O REMARK 620 2 ASP C 33 OD1 54.2 REMARK 620 3 ASP C 33 OD2 55.8 4.0 REMARK 620 4 GLU C 76 OE1 83.7 40.6 42.6 REMARK 620 5 GLU C 76 OE2 136.8 85.4 84.9 53.4 REMARK 620 6 HOH C 327 O 80.8 105.5 109.4 85.3 98.7 REMARK 620 7 HOH C 331 O 79.0 58.9 55.1 88.7 93.5 159.5 REMARK 620 8 HOH C 367 O 74.0 121.1 120.3 157.7 148.8 90.3 87.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 13 OD1 REMARK 620 2 ASP C 13 OD2 53.2 REMARK 620 3 HOH C 322 O 73.1 90.0 REMARK 620 4 HOH C 348 O 73.6 126.2 81.3 REMARK 620 5 HOH C 373 O 89.4 85.5 160.8 86.3 REMARK 620 6 HOH C 375 O 153.1 150.4 109.0 80.2 83.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 17 OG REMARK 620 2 THR C 35 OG1 79.6 REMARK 620 3 GNP C 201 O1G 173.1 96.4 REMARK 620 4 GNP C 201 O1B 95.4 174.9 88.6 REMARK 620 5 HOH C 317 O 88.4 90.7 86.1 88.5 REMARK 620 6 HOH C 325 O 92.2 92.9 93.6 87.9 176.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6DZH RELATED DB: PDB REMARK 900 RELATED ID: 6E6C RELATED DB: PDB REMARK 900 RELATED ID: 6E6H RELATED DB: PDB REMARK 900 RELATED ID: 6E6F RELATED DB: PDB REMARK 900 RELATED ID: 6E6G RELATED DB: PDB DBREF 6E6P A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 6E6P B 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 6E6P C 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 6E6P ASP A 13 UNP P01112 GLY 13 ENGINEERED MUTATION SEQADV 6E6P ASP B 13 UNP P01112 GLY 13 ENGINEERED MUTATION SEQADV 6E6P ASP C 13 UNP P01112 GLY 13 ENGINEERED MUTATION SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY ASP SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 B 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY ASP SEQRES 2 B 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 B 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 B 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 B 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 B 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 B 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 B 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 B 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 B 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 B 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 B 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 B 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 C 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY ASP SEQRES 2 C 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 C 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 C 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 C 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 C 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 C 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 C 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 C 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 C 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 C 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 C 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 C 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS HET GNP A 201 32 HET MG A 202 1 HET CA A 203 1 HET GOL A 204 6 HET GOL A 205 6 HET GNP B 201 32 HET MG B 202 1 HET GOL B 203 6 HET GNP C 201 32 HET MG C 202 1 HET CA C 203 1 HET NA C 204 1 HET GOL C 205 6 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GNP 3(C10 H17 N6 O13 P3) FORMUL 5 MG 3(MG 2+) FORMUL 6 CA 2(CA 2+) FORMUL 7 GOL 4(C3 H8 O3) FORMUL 15 NA NA 1+ FORMUL 17 HOH *225(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 ARG A 68 THR A 74 1 7 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 GLU A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 HIS A 166 1 16 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 GLN B 70 GLY B 75 1 6 HELIX 9 AA9 ASN B 86 ASP B 92 1 7 HELIX 10 AB1 ASP B 92 ASP B 105 1 14 HELIX 11 AB2 GLU B 126 GLY B 138 1 13 HELIX 12 AB3 GLY B 151 HIS B 166 1 16 HELIX 13 AB4 GLY C 15 ASN C 26 1 12 HELIX 14 AB5 GLN C 61 GLU C 63 5 3 HELIX 15 AB6 TYR C 64 ARG C 73 1 10 HELIX 16 AB7 ASN C 86 ASP C 92 1 7 HELIX 17 AB8 ASP C 92 ASP C 105 1 14 HELIX 18 AB9 GLU C 126 GLY C 138 1 13 HELIX 19 AC1 GLY C 151 HIS C 166 1 16 SHEET 1 AA1 6 SER A 39 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N LEU A 6 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 SER B 39 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O LEU B 53 N LYS B 42 SHEET 3 AA2 6 GLU B 3 GLY B 10 1 N LEU B 6 O ASP B 54 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 7 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 AA2 6 TYR B 141 GLU B 143 1 O ILE B 142 N LEU B 113 SHEET 1 AA3 6 GLU C 37 ILE C 46 0 SHEET 2 AA3 6 GLU C 49 THR C 58 -1 O ASP C 57 N ASP C 38 SHEET 3 AA3 6 GLU C 3 GLY C 10 1 N LEU C 6 O LEU C 56 SHEET 4 AA3 6 GLY C 77 ALA C 83 1 O VAL C 81 N VAL C 9 SHEET 5 AA3 6 MET C 111 ASN C 116 1 O ASN C 116 N PHE C 82 SHEET 6 AA3 6 TYR C 141 GLU C 143 1 O ILE C 142 N LEU C 113 LINK OE1 GLU A 3 CA CA A 203 1555 1555 2.58 LINK OE2 GLU A 3 CA CA A 203 1555 1555 2.58 LINK OG SER A 17 MG MG A 202 1555 1555 2.21 LINK O3G GNP A 201 MG MG A 202 1555 1555 1.85 LINK O2B GNP A 201 MG MG A 202 1555 1555 2.08 LINK MG MG A 202 O HOH A 313 1555 1555 2.04 LINK MG MG A 202 O HOH A 321 1555 1555 2.12 LINK MG MG A 202 O HOH A 347 1555 1555 2.18 LINK CA CA A 203 O HOH A 351 1555 1555 2.47 LINK CA CA A 203 O HOH A 354 1555 1555 2.48 LINK CA CA A 203 O HOH B 309 1555 1555 2.67 LINK CA CA A 203 O HOH B 341 1555 1555 2.59 LINK CA CA A 203 O HOH B 349 1555 1555 2.68 LINK CA CA A 203 O HOH B 362 1555 1555 2.29 LINK OG SER B 17 MG MG B 202 1555 1555 2.15 LINK O1G GNP B 201 MG MG B 202 1555 1555 1.97 LINK O1B GNP B 201 MG MG B 202 1555 1555 2.01 LINK MG MG B 202 O HOH B 315 1555 1555 2.06 LINK MG MG B 202 O HOH B 326 1555 1555 2.07 LINK MG MG B 202 O HOH B 351 1555 1555 2.17 LINK O GLU C 3 CA CA C 203 1555 1555 2.35 LINK OD1 ASP C 13 NA NA C 204 1555 1555 2.32 LINK OD2 ASP C 13 NA NA C 204 1555 1555 2.57 LINK OG SER C 17 MG MG C 202 1555 1555 1.99 LINK OD1 ASP C 33 CA CA C 203 1555 4555 2.50 LINK OD2 ASP C 33 CA CA C 203 1555 4555 2.59 LINK OG1 THR C 35 MG MG C 202 1555 1555 2.11 LINK OE1 GLU C 76 CA CA C 203 1555 1555 2.56 LINK OE2 GLU C 76 CA CA C 203 1555 1555 2.33 LINK O1G GNP C 201 MG MG C 202 1555 1555 1.94 LINK O1B GNP C 201 MG MG C 202 1555 1555 2.03 LINK MG MG C 202 O HOH C 317 1555 1555 2.16 LINK MG MG C 202 O HOH C 325 1555 1555 2.06 LINK CA CA C 203 O HOH C 327 1555 4455 2.29 LINK CA CA C 203 O HOH C 331 1555 1555 2.66 LINK CA CA C 203 O HOH C 367 1555 1555 2.74 LINK NA NA C 204 O HOH C 322 1555 1555 2.49 LINK NA NA C 204 O HOH C 348 1555 1555 2.53 LINK NA NA C 204 O HOH C 373 1555 1555 2.31 LINK NA NA C 204 O HOH C 375 1555 1555 2.44 SITE 1 AC1 5 SER A 17 GNP A 201 HOH A 313 HOH A 321 SITE 2 AC1 5 HOH A 347 SITE 1 AC2 7 GLU A 3 HOH A 351 HOH A 354 HOH B 309 SITE 2 AC2 7 HOH B 341 HOH B 349 HOH B 362 SITE 1 AC3 6 GLY A 138 ILE A 139 GLU A 162 GLN A 165 SITE 2 AC3 6 HOH A 302 GLU C 162 SITE 1 AC4 28 ARG A 41 GLY B 12 ASP B 13 VAL B 14 SITE 2 AC4 28 GLY B 15 LYS B 16 SER B 17 ALA B 18 SITE 3 AC4 28 PHE B 28 VAL B 29 ASP B 30 GLY B 60 SITE 4 AC4 28 ASN B 116 LYS B 117 ASP B 119 LEU B 120 SITE 5 AC4 28 SER B 145 ALA B 146 LYS B 147 MG B 202 SITE 6 AC4 28 HOH B 315 HOH B 326 HOH B 331 HOH B 333 SITE 7 AC4 28 HOH B 341 HOH B 349 HOH B 351 HOH B 362 SITE 1 AC5 5 SER B 17 GNP B 201 HOH B 315 HOH B 326 SITE 2 AC5 5 HOH B 351 SITE 1 AC6 8 PHE B 90 GLU B 91 ILE B 93 HIS B 94 SITE 2 AC6 8 LEU B 133 ASN C 85 LEU C 120 ALA C 121 SITE 1 AC7 30 HOH B 355 HOH B 361 GLY C 12 ASP C 13 SITE 2 AC7 30 VAL C 14 GLY C 15 LYS C 16 SER C 17 SITE 3 AC7 30 ALA C 18 PHE C 28 VAL C 29 ASP C 30 SITE 4 AC7 30 TYR C 32 PRO C 34 THR C 35 GLY C 60 SITE 5 AC7 30 ASN C 116 LYS C 117 ASP C 119 LEU C 120 SITE 6 AC7 30 SER C 145 ALA C 146 LYS C 147 MG C 202 SITE 7 AC7 30 HOH C 317 HOH C 322 HOH C 325 HOH C 346 SITE 8 AC7 30 HOH C 348 HOH C 349 SITE 1 AC8 5 SER C 17 THR C 35 GNP C 201 HOH C 317 SITE 2 AC8 5 HOH C 325 SITE 1 AC9 6 GLU C 3 ASP C 33 GLU C 76 HOH C 327 SITE 2 AC9 6 HOH C 331 HOH C 367 SITE 1 AD1 5 ASP C 13 HOH C 322 HOH C 348 HOH C 373 SITE 2 AD1 5 HOH C 375 SITE 1 AD2 7 ASN A 85 ALA A 122 PHE C 90 GLU C 91 SITE 2 AD2 7 ILE C 93 HIS C 94 LEU C 133 CRYST1 61.649 75.567 94.722 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016221 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010557 0.00000