HEADER TRANSPORT PROTEIN 27-JUL-18 6E7X TITLE HETERODIMER OF THE GLUN1B-GLUN2B NMDA RECEPTOR AMINO-TERMINAL DOMAINS TITLE 2 BOUND TO ALLOSTERIC INHIBITOR 93-97 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: EXTRACELLULAR RESIDUES 23-407; COMPND 5 SYNONYM: GLUN1,N-METHYL-D-ASPARTATE RECEPTOR SUBUNIT NR1,NMD-R1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2B; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: EXTRACELLULAR RESIDUES 32-394; COMPND 12 SYNONYM: GLUN2B,GLUTAMATE [NMDA] RECEPTOR SUBUNIT EPSILON-2,N-METHYL COMPND 13 D-ASPARTATE RECEPTOR SUBTYPE 2B,NR2B; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: GRIN1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 12 ORGANISM_COMMON: RAT; SOURCE 13 ORGANISM_TAXID: 10116; SOURCE 14 GENE: GRIN2B; SOURCE 15 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 16 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS NMDA RECEPTOR, ION CHANNEL, ALLOSTERIC MODULATION, EXTRACELLULAR KEYWDS 2 DOMAIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.C.REGAN,H.FURUKAWA REVDAT 5 16-OCT-24 6E7X 1 REMARK REVDAT 4 11-OCT-23 6E7X 1 HETSYN LINK REVDAT 3 29-JUL-20 6E7X 1 CAVEAT COMPND REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 27-NOV-19 6E7X 1 REMARK REVDAT 1 30-JAN-19 6E7X 0 JRNL AUTH M.C.REGAN,H.FURUKAWA JRNL TITL STRUCTURAL ELEMENTS OF A PH-SENSITIVE INHIBITOR BINDING SITE JRNL TITL 2 IN NMDA RECEPTORS JRNL REF NAT COMMUN V. 10 321 2019 JRNL REFN ESSN 2041-1723 REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.6 REMARK 3 NUMBER OF REFLECTIONS : 53795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2779 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1730 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 37.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10948 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 217 REMARK 3 SOLVENT ATOMS : 241 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -1.07000 REMARK 3 B33 (A**2) : 0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.608 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.275 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.210 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.509 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 11439 ; 0.001 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 10341 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 15624 ; 0.389 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 23883 ; 0.424 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1433 ; 8.277 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 453 ;37.834 ;24.393 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1748 ;15.442 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;25.658 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1838 ; 0.029 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 12658 ; 0.002 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2253 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 23 A 405 1 REMARK 3 1 C 23 C 405 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 1 A (A**2): 2682 ; 3.850 ; 0.500 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 32 B 394 1 REMARK 3 1 D 32 D 394 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 2 B (A**2): 2698 ; 3.970 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 509 REMARK 3 ORIGIN FOR THE GROUP (A): -12.1449 -63.0116 141.9033 REMARK 3 T TENSOR REMARK 3 T11: 0.0304 T22: 0.1938 REMARK 3 T33: 0.0544 T12: -0.0532 REMARK 3 T13: -0.0174 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 1.2097 L22: 1.7554 REMARK 3 L33: 3.2633 L12: -0.5503 REMARK 3 L13: 0.7044 L23: -0.8856 REMARK 3 S TENSOR REMARK 3 S11: -0.1447 S12: 0.1572 S13: 0.1749 REMARK 3 S21: -0.0152 S22: -0.0004 S23: 0.0092 REMARK 3 S31: -0.1460 S32: 0.0620 S33: 0.1451 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 32 B 502 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2681 -55.5215 174.9304 REMARK 3 T TENSOR REMARK 3 T11: 0.2031 T22: 0.1777 REMARK 3 T33: 0.0441 T12: 0.0444 REMARK 3 T13: -0.0346 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 2.6414 L22: 2.3869 REMARK 3 L33: 2.1055 L12: 1.1031 REMARK 3 L13: 0.3656 L23: -0.0297 REMARK 3 S TENSOR REMARK 3 S11: -0.0960 S12: -0.2443 S13: 0.1014 REMARK 3 S21: 0.3530 S22: -0.0259 S23: 0.1787 REMARK 3 S31: -0.3267 S32: -0.1566 S33: 0.1219 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 23 C 503 REMARK 3 ORIGIN FOR THE GROUP (A): -75.4999 -71.7708 184.5065 REMARK 3 T TENSOR REMARK 3 T11: 0.2024 T22: 0.2017 REMARK 3 T33: 0.1811 T12: 0.0348 REMARK 3 T13: -0.0082 T23: 0.1283 REMARK 3 L TENSOR REMARK 3 L11: 1.8652 L22: 2.9560 REMARK 3 L33: 2.7327 L12: 0.3394 REMARK 3 L13: 1.0665 L23: 1.0147 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: -0.0773 S13: -0.0869 REMARK 3 S21: 0.5147 S22: -0.0242 S23: 0.1129 REMARK 3 S31: 0.0329 S32: -0.1379 S33: 0.0547 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 32 D 502 REMARK 3 ORIGIN FOR THE GROUP (A): -72.2487 -66.9291 151.0749 REMARK 3 T TENSOR REMARK 3 T11: 0.1546 T22: 0.4696 REMARK 3 T33: 0.1627 T12: -0.0256 REMARK 3 T13: -0.0463 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 3.2673 L22: 1.1774 REMARK 3 L33: 1.3568 L12: -0.5997 REMARK 3 L13: 0.8007 L23: -0.2205 REMARK 3 S TENSOR REMARK 3 S11: -0.0543 S12: 0.5590 S13: -0.0025 REMARK 3 S21: -0.1867 S22: 0.0734 S23: -0.1609 REMARK 3 S31: -0.0510 S32: 0.2499 S33: -0.0191 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6E7X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000234395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63551 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3QEL REMARK 200 REMARK 200 REMARK: PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.0-3.5 M SODIUM FORMATE, 0.1 M HEPES, REMARK 280 35 MM SODIUM CHLORIDE, 7 MM TRIS-HCL, 50 UM IFENPRODIL, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 134.21000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.76800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 134.21000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.76800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 98 REMARK 465 THR A 99 REMARK 465 ASP A 100 REMARK 465 LYS A 187 REMARK 465 GLU A 188 REMARK 465 SER A 189 REMARK 465 LYS A 190 REMARK 465 SER A 191 REMARK 465 LYS A 192 REMARK 465 LYS A 193 REMARK 465 ARG A 194 REMARK 465 ASN A 195 REMARK 465 TYR A 196 REMARK 465 GLU A 197 REMARK 465 ASN A 198 REMARK 465 LEU A 199 REMARK 465 ASP A 200 REMARK 465 GLN A 201 REMARK 465 LEU A 202 REMARK 465 SER A 203 REMARK 465 TYR A 204 REMARK 465 ASP A 205 REMARK 465 ASN A 206 REMARK 465 LYS A 207 REMARK 465 ARG A 208 REMARK 465 GLU A 406 REMARK 465 THR A 407 REMARK 465 PRO C 98 REMARK 465 THR C 99 REMARK 465 ASP C 100 REMARK 465 GLY C 186 REMARK 465 LYS C 187 REMARK 465 GLU C 188 REMARK 465 SER C 189 REMARK 465 LYS C 190 REMARK 465 SER C 191 REMARK 465 LYS C 192 REMARK 465 LYS C 193 REMARK 465 ARG C 194 REMARK 465 ASN C 195 REMARK 465 TYR C 196 REMARK 465 GLU C 197 REMARK 465 ASN C 198 REMARK 465 LEU C 199 REMARK 465 ASP C 200 REMARK 465 GLN C 201 REMARK 465 LEU C 202 REMARK 465 SER C 203 REMARK 465 TYR C 204 REMARK 465 ASP C 205 REMARK 465 ASN C 206 REMARK 465 LYS C 207 REMARK 465 ARG C 208 REMARK 465 GLU C 406 REMARK 465 THR C 407 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 23 CG OD1 OD2 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 ILE A 58 CD1 REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 LYS A 214 CE NZ REMARK 470 LYS A 223 CE NZ REMARK 470 ASN A 224 CG OD1 ND2 REMARK 470 ARG A 238 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 320 CG CD OE1 OE2 REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 LYS A 350 CE NZ REMARK 470 ASP A 353 CG OD1 OD2 REMARK 470 GLU A 363 CG CD OE1 OE2 REMARK 470 LYS A 381 CG CD CE NZ REMARK 470 LYS A 399 CE NZ REMARK 470 SER B 34 OG REMARK 470 GLU B 47 CD OE1 OE2 REMARK 470 LYS B 51 CD CE NZ REMARK 470 ASP B 52 CG OD1 OD2 REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 ASP B 57 CG OD1 OD2 REMARK 470 ASP B 58 CG OD1 OD2 REMARK 470 HIS B 60 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 61 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 63 OG REMARK 470 GLU B 69 CG CD OE1 OE2 REMARK 470 VAL B 71 CG1 CG2 REMARK 470 ASP B 91 CG OD1 OD2 REMARK 470 ARG B 92 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 ILE B 94 CG2 REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 470 SER B 214 OG REMARK 470 LYS B 215 NZ REMARK 470 LYS B 221 NZ REMARK 470 GLU B 235 CD REMARK 470 ASP B 283 CG OD1 OD2 REMARK 470 SER B 319 OG REMARK 470 ASN B 323 CG OD1 ND2 REMARK 470 LYS B 327 CG CD CE NZ REMARK 470 ARG B 328 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 345 CG CD OE1 OE2 REMARK 470 LYS B 361 CG CD CE NZ REMARK 470 LYS B 369 CG CD CE NZ REMARK 470 LYS B 378 CG CD CE NZ REMARK 470 LYS B 380 CG CD CE NZ REMARK 470 ASP B 381 CG OD1 OD2 REMARK 470 LYS B 382 CG CD CE NZ REMARK 470 SER B 383 OG REMARK 470 GLN B 385 CG CD OE1 NE2 REMARK 470 ARG B 393 CG CD NE CZ NH1 NH2 REMARK 470 MET B 394 CG SD CE REMARK 470 ASP C 23 CG OD1 OD2 REMARK 470 LYS C 36 CG CD CE NZ REMARK 470 LYS C 37 CG CD CE NZ REMARK 470 LYS C 51 CD CE NZ REMARK 470 PHE C 54 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 56 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 57 CG CD CE NZ REMARK 470 ARG C 68 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 102 CG CD1 CD2 REMARK 470 LYS C 178 CE NZ REMARK 470 GLU C 185 CG CD OE1 OE2 REMARK 470 LYS C 211 CG CD CE NZ REMARK 470 LYS C 233 CE NZ REMARK 470 ARG C 238 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 285 CG OD1 OD2 REMARK 470 GLU C 320 CG CD OE1 OE2 REMARK 470 ARG C 327 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 337 CG CD CE NZ REMARK 470 LYS C 350 CE NZ REMARK 470 ASP C 353 CG OD1 OD2 REMARK 470 ARG C 358 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 363 CG CD OE1 OE2 REMARK 470 LYS C 381 CG CD CE NZ REMARK 470 TYR C 392 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG C 398 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 399 CG CD CE NZ REMARK 470 SER D 34 OG REMARK 470 THR D 44 OG1 CG2 REMARK 470 GLU D 47 CG CD OE1 OE2 REMARK 470 LYS D 51 CD CE NZ REMARK 470 ASP D 52 CG OD1 OD2 REMARK 470 GLU D 55 CG CD OE1 OE2 REMARK 470 LYS D 56 CG CD CE NZ REMARK 470 ASP D 57 CG OD1 OD2 REMARK 470 ASP D 58 CG OD1 OD2 REMARK 470 PHE D 59 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG D 67 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 69 CG CD OE1 OE2 REMARK 470 VAL D 71 CG1 CG2 REMARK 470 ASP D 91 CG OD1 OD2 REMARK 470 ARG D 92 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 93 CG CD CE NZ REMARK 470 ASP D 136 CG OD1 OD2 REMARK 470 GLU D 139 CG CD OE1 OE2 REMARK 470 GLU D 162 CG CD OE1 OE2 REMARK 470 GLU D 191 CG CD OE1 OE2 REMARK 470 ASN D 192 CG OD1 ND2 REMARK 470 SER D 193 OG REMARK 470 PHE D 194 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU D 198 CG CD OE1 OE2 REMARK 470 LYS D 221 CG CD CE NZ REMARK 470 LYS D 222 CG CD CE NZ REMARK 470 ASP D 286 CG OD1 OD2 REMARK 470 LYS D 318 CG CD CE NZ REMARK 470 SER D 319 OG REMARK 470 TYR D 322 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN D 323 CG OD1 ND2 REMARK 470 LYS D 327 CG CD CE NZ REMARK 470 ARG D 337 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 345 CG CD OE1 OE2 REMARK 470 LEU D 349 CG CD1 CD2 REMARK 470 GLU D 353 CG CD OE1 OE2 REMARK 470 LYS D 361 CG CD CE NZ REMARK 470 LYS D 369 CG CD CE NZ REMARK 470 GLU D 370 CG CD OE1 OE2 REMARK 470 LYS D 372 CG CD CE NZ REMARK 470 LYS D 378 CD CE NZ REMARK 470 LYS D 380 CG CD CE NZ REMARK 470 ASP D 381 CG OD1 OD2 REMARK 470 LYS D 382 CG CD CE NZ REMARK 470 SER D 383 OG REMARK 470 GLN D 385 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER D 305 O HOH D 601 2.10 REMARK 500 O ALA C 232 O HOH C 601 2.11 REMARK 500 OG SER C 85 O HOH C 602 2.12 REMARK 500 OG1 THR B 233 O HOH B 601 2.15 REMARK 500 C LYS B 56 CB PHE B 59 2.15 REMARK 500 OE1 GLN A 40 NH1 ARG A 43 2.18 REMARK 500 O HOH B 601 O HOH B 608 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ARG A 380 NH1 ARG D 393 2557 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 82 -62.17 -109.77 REMARK 500 THR A 122 -0.56 -146.89 REMARK 500 LEU A 184 -73.62 -77.08 REMARK 500 GLU A 185 58.33 -59.35 REMARK 500 ASN A 321 39.59 71.26 REMARK 500 ASP A 353 48.08 -107.21 REMARK 500 ASN A 379 40.99 39.44 REMARK 500 SER A 391 -11.90 -149.48 REMARK 500 LYS B 56 24.35 -64.15 REMARK 500 ASP B 58 21.86 -54.06 REMARK 500 HIS B 61 60.04 -101.55 REMARK 500 ASP B 91 58.48 -109.43 REMARK 500 ARG B 92 153.25 140.00 REMARK 500 ASP B 283 46.25 -155.76 REMARK 500 GLU B 284 83.33 45.49 REMARK 500 ASN B 333 32.43 -97.93 REMARK 500 LYS B 382 34.98 37.82 REMARK 500 LEU C 82 -60.65 -109.33 REMARK 500 THR C 122 2.57 -150.84 REMARK 500 ASP C 353 46.80 -104.17 REMARK 500 SER C 391 -14.99 -151.63 REMARK 500 SER D 45 147.14 -174.02 REMARK 500 LYS D 56 25.57 -74.67 REMARK 500 ASP D 58 1.56 -62.22 REMARK 500 LEU D 62 -169.85 -75.92 REMARK 500 ASP D 91 59.78 -108.34 REMARK 500 ARG D 92 150.62 137.59 REMARK 500 CYS D 232 -174.71 -171.50 REMARK 500 TYR D 282 53.90 -152.77 REMARK 500 GLU D 284 89.34 -48.47 REMARK 500 LYS D 382 34.80 36.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 57 ASP B 58 149.46 REMARK 500 GLU D 55 LYS D 56 147.52 REMARK 500 HIS D 61 LEU D 62 -146.38 REMARK 500 ASN D 333 MET D 334 -149.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG C 501 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 508 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 137 O REMARK 620 2 ASP A 364 O 121.0 REMARK 620 3 HOH A 632 O 115.6 120.2 REMARK 620 4 HOH A 645 O 82.7 75.2 95.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE C 137 O REMARK 620 2 ASP C 364 O 125.1 REMARK 620 3 HOH C 625 O 114.2 117.0 REMARK 620 4 HOH C 633 O 86.3 76.0 89.4 REMARK 620 N 1 2 3 DBREF1 6E7X A 23 407 UNP NMDZ1_XENLA DBREF2 6E7X A A0A1L8F5J9 23 407 DBREF 6E7X B 32 394 UNP Q00960 NMDE2_RAT 32 394 DBREF1 6E7X C 23 407 UNP NMDZ1_XENLA DBREF2 6E7X C A0A1L8F5J9 23 407 DBREF 6E7X D 32 394 UNP Q00960 NMDE2_RAT 32 394 SEQADV 6E7X GLN A 61 UNP A0A1L8F5J ASN 61 ENGINEERED MUTATION SEQADV 6E7X GLN A 371 UNP A0A1L8F5J ASN 371 ENGINEERED MUTATION SEQADV 6E7X ASP B 348 UNP Q00960 ASN 348 ENGINEERED MUTATION SEQADV 6E7X GLN C 61 UNP A0A1L8F5J ASN 61 ENGINEERED MUTATION SEQADV 6E7X GLN C 371 UNP A0A1L8F5J ASN 371 ENGINEERED MUTATION SEQADV 6E7X ASP D 348 UNP Q00960 ASN 348 ENGINEERED MUTATION SEQRES 1 A 385 ASP PRO LYS ILE VAL ASN ILE GLY ALA VAL LEU SER THR SEQRES 2 A 385 LYS LYS HIS GLU GLN ILE PHE ARG GLU ALA VAL ASN GLN SEQRES 3 A 385 ALA ASN LYS ARG HIS PHE THR ARG LYS ILE GLN LEU GLN SEQRES 4 A 385 ALA THR SER VAL THR HIS ARG PRO ASN ALA ILE GLN MET SEQRES 5 A 385 ALA LEU SER VAL CYS GLU ASP LEU ILE SER SER GLN VAL SEQRES 6 A 385 TYR ALA ILE LEU VAL SER HIS PRO PRO ALA PRO THR ASP SEQRES 7 A 385 HIS LEU THR PRO THR PRO ILE SER TYR THR ALA GLY PHE SEQRES 8 A 385 TYR ARG ILE PRO VAL ILE GLY LEU THR THR ARG MET SER SEQRES 9 A 385 ILE TYR SER ASP LYS SER ILE HIS LEU SER PHE LEU ARG SEQRES 10 A 385 THR VAL PRO PRO TYR SER HIS GLN ALA LEU VAL TRP PHE SEQRES 11 A 385 GLU MET MET ARG LEU PHE ASN TRP ASN HIS VAL ILE LEU SEQRES 12 A 385 ILE VAL SER ASP ASP HIS GLU GLY ARG ALA ALA GLN LYS SEQRES 13 A 385 LYS LEU GLU THR LEU LEU GLU GLY LYS GLU SER LYS SER SEQRES 14 A 385 LYS LYS ARG ASN TYR GLU ASN LEU ASP GLN LEU SER TYR SEQRES 15 A 385 ASP ASN LYS ARG GLY PRO LYS ALA ASP LYS VAL LEU GLN SEQRES 16 A 385 PHE GLU PRO GLY THR LYS ASN LEU THR ALA LEU LEU LEU SEQRES 17 A 385 GLU ALA LYS GLU LEU GLU ALA ARG VAL ILE ILE LEU SER SEQRES 18 A 385 ALA SER GLU ASP ASP ALA THR ALA VAL TYR LYS SER ALA SEQRES 19 A 385 ALA MET LEU ASP MET THR GLY ALA GLY TYR VAL TRP LEU SEQRES 20 A 385 VAL GLY GLU ARG GLU ILE SER GLY SER ALA LEU ARG TYR SEQRES 21 A 385 ALA PRO ASP GLY ILE ILE GLY LEU GLN LEU ILE ASN GLY SEQRES 22 A 385 LYS ASN GLU SER ALA HIS ILE SER ASP ALA VAL ALA VAL SEQRES 23 A 385 VAL ALA GLN ALA ILE HIS GLU LEU PHE GLU MET GLU ASN SEQRES 24 A 385 ILE THR ASP PRO PRO ARG GLY CYS VAL GLY ASN THR ASN SEQRES 25 A 385 ILE TRP LYS THR GLY PRO LEU PHE LYS ARG VAL LEU MET SEQRES 26 A 385 SER SER LYS TYR PRO ASP GLY VAL THR GLY ARG ILE GLU SEQRES 27 A 385 PHE ASN GLU ASP GLY ASP ARG LYS PHE ALA GLN TYR SER SEQRES 28 A 385 ILE MET ASN LEU GLN ASN ARG LYS LEU VAL GLN VAL GLY SEQRES 29 A 385 ILE PHE ASN GLY SER TYR ILE ILE GLN ASN ASP ARG LYS SEQRES 30 A 385 ILE ILE TRP PRO GLY GLY GLU THR SEQRES 1 B 363 PRO PRO SER ILE GLY ILE ALA VAL ILE LEU VAL GLY THR SEQRES 2 B 363 SER ASP GLU VAL ALA ILE LYS ASP ALA HIS GLU LYS ASP SEQRES 3 B 363 ASP PHE HIS HIS LEU SER VAL VAL PRO ARG VAL GLU LEU SEQRES 4 B 363 VAL ALA MET ASN GLU THR ASP PRO LYS SER ILE ILE THR SEQRES 5 B 363 ARG ILE CYS ASP LEU MET SER ASP ARG LYS ILE GLN GLY SEQRES 6 B 363 VAL VAL PHE ALA ASP ASP THR ASP GLN GLU ALA ILE ALA SEQRES 7 B 363 GLN ILE LEU ASP PHE ILE SER ALA GLN THR LEU THR PRO SEQRES 8 B 363 ILE LEU GLY ILE HIS GLY GLY SER SER MET ILE MET ALA SEQRES 9 B 363 ASP LYS ASP GLU SER SER MET PHE PHE GLN PHE GLY PRO SEQRES 10 B 363 SER ILE GLU GLN GLN ALA SER VAL MET LEU ASN ILE MET SEQRES 11 B 363 GLU GLU TYR ASP TRP TYR ILE PHE SER ILE VAL THR THR SEQRES 12 B 363 TYR PHE PRO GLY TYR GLN ASP PHE VAL ASN LYS ILE ARG SEQRES 13 B 363 SER THR ILE GLU ASN SER PHE VAL GLY TRP GLU LEU GLU SEQRES 14 B 363 GLU VAL LEU LEU LEU ASP MET SER LEU ASP ASP GLY ASP SEQRES 15 B 363 SER LYS ILE GLN ASN GLN LEU LYS LYS LEU GLN SER PRO SEQRES 16 B 363 ILE ILE LEU LEU TYR CYS THR LYS GLU GLU ALA THR TYR SEQRES 17 B 363 ILE PHE GLU VAL ALA ASN SER VAL GLY LEU THR GLY TYR SEQRES 18 B 363 GLY TYR THR TRP ILE VAL PRO SER LEU VAL ALA GLY ASP SEQRES 19 B 363 THR ASP THR VAL PRO SER GLU PHE PRO THR GLY LEU ILE SEQRES 20 B 363 SER VAL SER TYR ASP GLU TRP ASP TYR GLY LEU PRO ALA SEQRES 21 B 363 ARG VAL ARG ASP GLY ILE ALA ILE ILE THR THR ALA ALA SEQRES 22 B 363 SER ASP MET LEU SER GLU HIS SER PHE ILE PRO GLU PRO SEQRES 23 B 363 LYS SER SER CYS TYR ASN THR HIS GLU LYS ARG ILE TYR SEQRES 24 B 363 GLN SER ASN MET LEU ASN ARG TYR LEU ILE ASN VAL THR SEQRES 25 B 363 PHE GLU GLY ARG ASP LEU SER PHE SER GLU ASP GLY TYR SEQRES 26 B 363 GLN MET HIS PRO LYS LEU VAL ILE ILE LEU LEU ASN LYS SEQRES 27 B 363 GLU ARG LYS TRP GLU ARG VAL GLY LYS TRP LYS ASP LYS SEQRES 28 B 363 SER LEU GLN MET LYS TYR TYR VAL TRP PRO ARG MET SEQRES 1 C 385 ASP PRO LYS ILE VAL ASN ILE GLY ALA VAL LEU SER THR SEQRES 2 C 385 LYS LYS HIS GLU GLN ILE PHE ARG GLU ALA VAL ASN GLN SEQRES 3 C 385 ALA ASN LYS ARG HIS PHE THR ARG LYS ILE GLN LEU GLN SEQRES 4 C 385 ALA THR SER VAL THR HIS ARG PRO ASN ALA ILE GLN MET SEQRES 5 C 385 ALA LEU SER VAL CYS GLU ASP LEU ILE SER SER GLN VAL SEQRES 6 C 385 TYR ALA ILE LEU VAL SER HIS PRO PRO ALA PRO THR ASP SEQRES 7 C 385 HIS LEU THR PRO THR PRO ILE SER TYR THR ALA GLY PHE SEQRES 8 C 385 TYR ARG ILE PRO VAL ILE GLY LEU THR THR ARG MET SER SEQRES 9 C 385 ILE TYR SER ASP LYS SER ILE HIS LEU SER PHE LEU ARG SEQRES 10 C 385 THR VAL PRO PRO TYR SER HIS GLN ALA LEU VAL TRP PHE SEQRES 11 C 385 GLU MET MET ARG LEU PHE ASN TRP ASN HIS VAL ILE LEU SEQRES 12 C 385 ILE VAL SER ASP ASP HIS GLU GLY ARG ALA ALA GLN LYS SEQRES 13 C 385 LYS LEU GLU THR LEU LEU GLU GLY LYS GLU SER LYS SER SEQRES 14 C 385 LYS LYS ARG ASN TYR GLU ASN LEU ASP GLN LEU SER TYR SEQRES 15 C 385 ASP ASN LYS ARG GLY PRO LYS ALA ASP LYS VAL LEU GLN SEQRES 16 C 385 PHE GLU PRO GLY THR LYS ASN LEU THR ALA LEU LEU LEU SEQRES 17 C 385 GLU ALA LYS GLU LEU GLU ALA ARG VAL ILE ILE LEU SER SEQRES 18 C 385 ALA SER GLU ASP ASP ALA THR ALA VAL TYR LYS SER ALA SEQRES 19 C 385 ALA MET LEU ASP MET THR GLY ALA GLY TYR VAL TRP LEU SEQRES 20 C 385 VAL GLY GLU ARG GLU ILE SER GLY SER ALA LEU ARG TYR SEQRES 21 C 385 ALA PRO ASP GLY ILE ILE GLY LEU GLN LEU ILE ASN GLY SEQRES 22 C 385 LYS ASN GLU SER ALA HIS ILE SER ASP ALA VAL ALA VAL SEQRES 23 C 385 VAL ALA GLN ALA ILE HIS GLU LEU PHE GLU MET GLU ASN SEQRES 24 C 385 ILE THR ASP PRO PRO ARG GLY CYS VAL GLY ASN THR ASN SEQRES 25 C 385 ILE TRP LYS THR GLY PRO LEU PHE LYS ARG VAL LEU MET SEQRES 26 C 385 SER SER LYS TYR PRO ASP GLY VAL THR GLY ARG ILE GLU SEQRES 27 C 385 PHE ASN GLU ASP GLY ASP ARG LYS PHE ALA GLN TYR SER SEQRES 28 C 385 ILE MET ASN LEU GLN ASN ARG LYS LEU VAL GLN VAL GLY SEQRES 29 C 385 ILE PHE ASN GLY SER TYR ILE ILE GLN ASN ASP ARG LYS SEQRES 30 C 385 ILE ILE TRP PRO GLY GLY GLU THR SEQRES 1 D 363 PRO PRO SER ILE GLY ILE ALA VAL ILE LEU VAL GLY THR SEQRES 2 D 363 SER ASP GLU VAL ALA ILE LYS ASP ALA HIS GLU LYS ASP SEQRES 3 D 363 ASP PHE HIS HIS LEU SER VAL VAL PRO ARG VAL GLU LEU SEQRES 4 D 363 VAL ALA MET ASN GLU THR ASP PRO LYS SER ILE ILE THR SEQRES 5 D 363 ARG ILE CYS ASP LEU MET SER ASP ARG LYS ILE GLN GLY SEQRES 6 D 363 VAL VAL PHE ALA ASP ASP THR ASP GLN GLU ALA ILE ALA SEQRES 7 D 363 GLN ILE LEU ASP PHE ILE SER ALA GLN THR LEU THR PRO SEQRES 8 D 363 ILE LEU GLY ILE HIS GLY GLY SER SER MET ILE MET ALA SEQRES 9 D 363 ASP LYS ASP GLU SER SER MET PHE PHE GLN PHE GLY PRO SEQRES 10 D 363 SER ILE GLU GLN GLN ALA SER VAL MET LEU ASN ILE MET SEQRES 11 D 363 GLU GLU TYR ASP TRP TYR ILE PHE SER ILE VAL THR THR SEQRES 12 D 363 TYR PHE PRO GLY TYR GLN ASP PHE VAL ASN LYS ILE ARG SEQRES 13 D 363 SER THR ILE GLU ASN SER PHE VAL GLY TRP GLU LEU GLU SEQRES 14 D 363 GLU VAL LEU LEU LEU ASP MET SER LEU ASP ASP GLY ASP SEQRES 15 D 363 SER LYS ILE GLN ASN GLN LEU LYS LYS LEU GLN SER PRO SEQRES 16 D 363 ILE ILE LEU LEU TYR CYS THR LYS GLU GLU ALA THR TYR SEQRES 17 D 363 ILE PHE GLU VAL ALA ASN SER VAL GLY LEU THR GLY TYR SEQRES 18 D 363 GLY TYR THR TRP ILE VAL PRO SER LEU VAL ALA GLY ASP SEQRES 19 D 363 THR ASP THR VAL PRO SER GLU PHE PRO THR GLY LEU ILE SEQRES 20 D 363 SER VAL SER TYR ASP GLU TRP ASP TYR GLY LEU PRO ALA SEQRES 21 D 363 ARG VAL ARG ASP GLY ILE ALA ILE ILE THR THR ALA ALA SEQRES 22 D 363 SER ASP MET LEU SER GLU HIS SER PHE ILE PRO GLU PRO SEQRES 23 D 363 LYS SER SER CYS TYR ASN THR HIS GLU LYS ARG ILE TYR SEQRES 24 D 363 GLN SER ASN MET LEU ASN ARG TYR LEU ILE ASN VAL THR SEQRES 25 D 363 PHE GLU GLY ARG ASP LEU SER PHE SER GLU ASP GLY TYR SEQRES 26 D 363 GLN MET HIS PRO LYS LEU VAL ILE ILE LEU LEU ASN LYS SEQRES 27 D 363 GLU ARG LYS TRP GLU ARG VAL GLY LYS TRP LYS ASP LYS SEQRES 28 D 363 SER LEU GLN MET LYS TYR TYR VAL TRP PRO ARG MET HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET MAN E 5 11 HET NAG A 501 14 HET NA A 508 1 HET CL A 509 1 HET CL A 510 1 HET NAG B 501 14 HET NAG B 502 14 HET T97 B 503 31 HET CL B 504 1 HET CL B 505 1 HET CL B 506 1 HET NAG C 501 13 HET NAG C 502 14 HET NA C 503 1 HET CL C 504 1 HET CL C 505 1 HET NAG D 502 14 HET T97 D 503 31 HET CL D 504 1 HET CL D 505 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM T97 N-{4-[(2S)-3-{[2-(3,4-DICHLOROPHENYL)ETHYL](2- HETNAM 2 T97 METHYLPROPYL)AMINO}-2- HETNAM 3 T97 HYDROXYPROPOXY]PHENYL}METHANESULFONAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 5 NAG 8(C8 H15 N O6) FORMUL 5 BMA C6 H12 O6 FORMUL 5 MAN 2(C6 H12 O6) FORMUL 7 NA 2(NA 1+) FORMUL 8 CL 9(CL 1-) FORMUL 12 T97 2(C22 H30 CL2 N2 O4 S) FORMUL 25 HOH *241(H2 O) HELIX 1 AA1 THR A 35 HIS A 53 1 19 HELIX 2 AA2 ASN A 70 LEU A 82 1 13 HELIX 3 AA3 ILE A 83 SER A 85 5 3 HELIX 4 AA4 PRO A 104 TYR A 114 1 11 HELIX 5 AA5 MET A 125 ASP A 130 5 6 HELIX 6 AA6 PRO A 143 SER A 145 5 3 HELIX 7 AA7 HIS A 146 PHE A 158 1 13 HELIX 8 AA8 ASP A 170 GLU A 185 1 16 HELIX 9 AA9 LEU A 225 LEU A 235 1 11 HELIX 10 AB1 SER A 245 LEU A 259 1 15 HELIX 11 AB2 GLU A 272 ILE A 275 5 4 HELIX 12 AB3 SER A 276 ALA A 283 1 8 HELIX 13 AB4 ASN A 297 PHE A 317 1 21 HELIX 14 AB5 THR A 338 SER A 348 1 11 HELIX 15 AB6 ASP B 46 HIS B 54 1 9 HELIX 16 AB7 ASP B 77 ASP B 91 1 15 HELIX 17 AB8 GLU B 106 LEU B 120 1 15 HELIX 18 AB9 GLY B 128 MET B 132 5 5 HELIX 19 AC1 SER B 149 TYR B 164 1 16 HELIX 20 AC2 GLY B 178 ASN B 192 1 15 HELIX 21 AC3 SER B 214 LYS B 221 1 8 HELIX 22 AC4 THR B 233 VAL B 247 1 15 HELIX 23 AC5 PRO B 259 GLY B 264 1 6 HELIX 24 AC6 GLY B 288 SER B 312 1 25 HELIX 25 AC7 HIS B 325 GLN B 331 5 7 HELIX 26 AC8 LEU B 335 ILE B 340 1 6 HELIX 27 AC9 THR C 35 HIS C 53 1 19 HELIX 28 AD1 ASN C 70 LEU C 82 1 13 HELIX 29 AD2 ILE C 83 SER C 85 5 3 HELIX 30 AD3 PRO C 104 TYR C 114 1 11 HELIX 31 AD4 MET C 125 ASP C 130 5 6 HELIX 32 AD5 PRO C 143 SER C 145 5 3 HELIX 33 AD6 HIS C 146 PHE C 158 1 13 HELIX 34 AD7 ASP C 170 GLU C 185 1 16 HELIX 35 AD8 LEU C 225 LEU C 235 1 11 HELIX 36 AD9 SER C 245 LEU C 259 1 15 HELIX 37 AE1 GLU C 272 SER C 276 5 5 HELIX 38 AE2 GLY C 277 ALA C 283 1 7 HELIX 39 AE3 ASN C 297 PHE C 317 1 21 HELIX 40 AE4 THR C 338 SER C 348 1 11 HELIX 41 AE5 ASP D 46 GLU D 55 1 10 HELIX 42 AE6 ASP D 77 ASP D 91 1 15 HELIX 43 AE7 GLU D 106 LEU D 120 1 15 HELIX 44 AE8 GLY D 128 MET D 132 5 5 HELIX 45 AE9 SER D 149 TYR D 164 1 16 HELIX 46 AF1 GLY D 178 ASN D 192 1 15 HELIX 47 AF2 SER D 214 LYS D 221 1 8 HELIX 48 AF3 THR D 233 VAL D 247 1 15 HELIX 49 AF4 PRO D 259 GLY D 264 1 6 HELIX 50 AF5 GLY D 288 SER D 312 1 25 HELIX 51 AF6 ASN D 323 ARG D 328 1 6 HELIX 52 AF7 LEU D 335 ILE D 340 1 6 SHEET 1 AA1 5 ILE A 58 THR A 66 0 SHEET 2 AA1 5 LYS A 25 LEU A 33 1 N ILE A 29 O GLN A 61 SHEET 3 AA1 5 VAL A 87 VAL A 92 1 O ALA A 89 N GLY A 30 SHEET 4 AA1 5 VAL A 118 GLY A 120 1 O ILE A 119 N VAL A 92 SHEET 5 AA1 5 PHE A 137 ARG A 139 1 O LEU A 138 N GLY A 120 SHEET 1 AA2 4 LYS A 211 PHE A 218 0 SHEET 2 AA2 4 HIS A 162 SER A 168 1 N LEU A 165 O LEU A 216 SHEET 3 AA2 4 VAL A 239 SER A 243 1 O ILE A 241 N ILE A 166 SHEET 4 AA2 4 VAL A 267 VAL A 270 1 O VAL A 267 N ILE A 240 SHEET 1 AA3 4 ILE A 288 LEU A 292 0 SHEET 2 AA3 4 TYR A 372 GLN A 378 -1 O SER A 373 N GLN A 291 SHEET 3 AA3 4 LYS A 381 PHE A 388 -1 O LYS A 381 N GLN A 378 SHEET 4 AA3 4 ILE A 393 GLN A 395 -1 O ILE A 394 N ILE A 387 SHEET 1 AA4 3 TYR A 351 GLY A 354 0 SHEET 2 AA4 3 GLY A 357 PHE A 361 -1 O ILE A 359 N TYR A 351 SHEET 3 AA4 3 ARG A 367 LYS A 368 -1 O LYS A 368 N GLU A 360 SHEET 1 AA5 5 VAL B 65 MET B 73 0 SHEET 2 AA5 5 SER B 34 VAL B 42 1 N VAL B 39 O VAL B 71 SHEET 3 AA5 5 ILE B 94 ALA B 100 1 O GLN B 95 N GLY B 36 SHEET 4 AA5 5 ILE B 123 HIS B 127 1 O LEU B 124 N PHE B 99 SHEET 5 AA5 5 PHE B 143 GLN B 145 1 O PHE B 144 N ILE B 123 SHEET 1 AA6 8 GLU B 198 LEU B 205 0 SHEET 2 AA6 8 ILE B 168 THR B 174 1 N ILE B 171 O LEU B 203 SHEET 3 AA6 8 ILE B 227 TYR B 231 1 O LEU B 229 N VAL B 172 SHEET 4 AA6 8 THR B 255 VAL B 258 1 O THR B 255 N ILE B 228 SHEET 5 AA6 8 ILE B 278 SER B 281 1 O ILE B 278 N VAL B 258 SHEET 6 AA6 8 LEU B 362 LEU B 367 -1 O ILE B 365 N SER B 279 SHEET 7 AA6 8 TRP B 373 LYS B 380 -1 O VAL B 376 N ILE B 364 SHEET 8 AA6 8 SER B 383 MET B 386 -1 O GLN B 385 N LYS B 378 SHEET 1 AA7 2 THR B 343 PHE B 344 0 SHEET 2 AA7 2 ARG B 347 ASP B 348 -1 O ARG B 347 N PHE B 344 SHEET 1 AA8 5 ILE C 58 THR C 66 0 SHEET 2 AA8 5 LYS C 25 LEU C 33 1 N ILE C 29 O GLN C 61 SHEET 3 AA8 5 VAL C 87 VAL C 92 1 O ALA C 89 N GLY C 30 SHEET 4 AA8 5 VAL C 118 GLY C 120 1 O ILE C 119 N VAL C 92 SHEET 5 AA8 5 PHE C 137 ARG C 139 1 O LEU C 138 N GLY C 120 SHEET 1 AA9 4 LYS C 211 PHE C 218 0 SHEET 2 AA9 4 HIS C 162 SER C 168 1 N VAL C 167 O LEU C 216 SHEET 3 AA9 4 VAL C 239 SER C 243 1 O ILE C 241 N ILE C 166 SHEET 4 AA9 4 VAL C 267 VAL C 270 1 O VAL C 267 N ILE C 240 SHEET 1 AB1 4 ILE C 288 LEU C 292 0 SHEET 2 AB1 4 TYR C 372 GLN C 378 -1 O SER C 373 N GLN C 291 SHEET 3 AB1 4 LYS C 381 PHE C 388 -1 O VAL C 385 N ILE C 374 SHEET 4 AB1 4 ILE C 393 GLN C 395 -1 O ILE C 394 N ILE C 387 SHEET 1 AB2 3 TYR C 351 GLY C 354 0 SHEET 2 AB2 3 GLY C 357 PHE C 361 -1 O ILE C 359 N TYR C 351 SHEET 3 AB2 3 ARG C 367 LYS C 368 -1 O LYS C 368 N GLU C 360 SHEET 1 AB3 5 VAL D 65 MET D 73 0 SHEET 2 AB3 5 SER D 34 VAL D 42 1 N VAL D 39 O VAL D 71 SHEET 3 AB3 5 ILE D 94 ALA D 100 1 O VAL D 98 N ILE D 40 SHEET 4 AB3 5 ILE D 123 HIS D 127 1 O LEU D 124 N PHE D 99 SHEET 5 AB3 5 PHE D 143 GLN D 145 1 O PHE D 144 N ILE D 123 SHEET 1 AB4 8 GLU D 198 LEU D 204 0 SHEET 2 AB4 8 ILE D 168 THR D 173 1 N ILE D 171 O GLU D 201 SHEET 3 AB4 8 ILE D 227 TYR D 231 1 O LEU D 229 N VAL D 172 SHEET 4 AB4 8 THR D 255 VAL D 258 1 O ILE D 257 N ILE D 228 SHEET 5 AB4 8 ILE D 278 SER D 281 1 O ILE D 278 N VAL D 258 SHEET 6 AB4 8 LEU D 362 LEU D 367 -1 O ILE D 365 N SER D 279 SHEET 7 AB4 8 TRP D 373 LYS D 380 -1 O TRP D 379 N LEU D 362 SHEET 8 AB4 8 SER D 383 MET D 386 -1 O GLN D 385 N LYS D 378 SHEET 1 AB5 2 THR D 343 PHE D 344 0 SHEET 2 AB5 2 ARG D 347 ASP D 348 -1 O ARG D 347 N PHE D 344 SSBOND 1 CYS A 79 CYS A 329 1555 1555 2.04 SSBOND 2 CYS B 86 CYS B 321 1555 1555 2.03 SSBOND 3 CYS C 79 CYS C 329 1555 1555 2.03 SSBOND 4 CYS D 86 CYS D 321 1555 1555 2.03 LINK ND2 ASN A 297 C1 NAG A 501 1555 1555 1.44 LINK ND2 ASN A 389 C1 NAG E 1 1555 1555 1.44 LINK O LYS B 56 CB PHE B 59 1555 1555 1.32 LINK ND2 ASN B 74 C1 NAG B 501 1555 1555 1.44 LINK ND2 ASN B 341 C1 NAG B 502 1555 1555 1.44 LINK ND2 ASN C 297 C1 NAG C 501 1555 1555 1.44 LINK ND2 ASN C 389 C1 NAG C 502 1555 1555 1.44 LINK ND2 ASN D 341 C1 NAG D 502 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 LINK O3 BMA E 3 C1 MAN E 4 1555 1555 1.44 LINK O6 BMA E 3 C1 MAN E 5 1555 1555 1.44 LINK O PHE A 137 NA NA A 508 1555 1555 2.12 LINK O ASP A 364 NA NA A 508 1555 1555 2.40 LINK NA NA A 508 O HOH A 632 1555 1555 2.21 LINK NA NA A 508 O HOH A 645 1555 1555 2.62 LINK O PHE C 137 NA NA C 503 1555 1555 2.14 LINK O ASP C 364 NA NA C 503 1555 1555 2.32 LINK NA NA C 503 O HOH C 625 1555 1555 2.37 LINK NA NA C 503 O HOH C 633 1555 1555 2.51 CRYST1 268.420 59.536 146.114 90.00 116.69 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003726 0.000000 0.001873 0.00000 SCALE2 0.000000 0.016797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007660 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.934238 -0.356633 -0.003558 -108.35101 1 MTRIX2 2 -0.354122 0.928755 -0.109595 -2.50675 1 MTRIX3 2 0.042390 -0.101127 -0.993970 321.39844 1 MTRIX1 3 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 3 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 3 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 4 -0.935926 -0.351727 -0.018157 -105.64322 1 MTRIX2 4 -0.347728 0.931011 -0.110926 -1.64954 1 MTRIX3 4 0.055920 -0.097505 -0.993663 322.63928 1