data_6E8S # _entry.id 6E8S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6E8S pdb_00006e8s 10.2210/pdb6e8s/pdb WWPDB D_1000235917 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-04-17 2 'Structure model' 1 1 2019-04-24 3 'Structure model' 1 2 2019-05-15 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Database references' 4 2 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Data collection' 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_validate_close_contact 4 2 'Structure model' struct_conn 5 2 'Structure model' struct_conn_type 6 3 'Structure model' entity 7 3 'Structure model' entity_name_com 8 3 'Structure model' struct 9 4 'Structure model' chem_comp_atom 10 4 'Structure model' chem_comp_bond 11 4 'Structure model' database_2 12 4 'Structure model' pdbx_struct_conn_angle 13 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_volume' 3 2 'Structure model' '_citation.page_first' 4 2 'Structure model' '_citation.page_last' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation_author.identifier_ORCID' 8 2 'Structure model' '_citation_author.name' 9 3 'Structure model' '_entity.pdbx_description' 10 3 'Structure model' '_struct.title' 11 4 'Structure model' '_database_2.pdbx_DOI' 12 4 'Structure model' '_database_2.pdbx_database_accession' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6E8S _pdbx_database_status.recvd_initial_deposition_date 2018-07-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Trachman, R.J.' 1 0000-0001-7459-2457 ;Ferre-D'Amare, A.R. ; 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Chem. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first 472 _citation.page_last 479 _citation.title 'Structure and functional reselection of the Mango-III fluorogenic RNA aptamer.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-019-0267-9 _citation.pdbx_database_id_PubMed 30992561 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Trachman 3rd., R.J.' 1 ? primary 'Autour, A.' 2 ? primary 'Jeng, S.C.Y.' 3 ? primary 'Abdolahzadeh, A.' 4 ? primary 'Andreoni, A.' 5 0000-0003-4415-2770 primary 'Cojocaru, R.' 6 ? primary 'Garipov, R.' 7 ? primary 'Dolgosheina, E.V.' 8 ? primary 'Knutson, J.R.' 9 ? primary 'Ryckelynck, M.' 10 0000-0002-2225-3733 primary 'Unrau, P.J.' 11 ? primary ;Ferre-D'Amare, A.R. ; 12 0000-0003-4549-1619 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'iMango-III aptamer' 12323.325 2 ? ? ? ? 2 non-polymer syn '4-[(3-{2-[(2-methoxyethyl)amino]-2-oxoethyl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium' 407.529 2 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 4 ? ? ? ? 6 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 7 water nat water 18.015 28 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNA (38-MER)' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCUACGAAGGAAGGAUUGGUAUGUGGUAUAUUCGUAGC _entity_poly.pdbx_seq_one_letter_code_can GCUACGAAGGAAGGAUUGGUAUGUGGUAUAUUCGUAGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '4-[(3-{2-[(2-methoxyethyl)amino]-2-oxoethyl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium' EKJ 3 'POTASSIUM ION' K 4 'MAGNESIUM ION' MG 5 'SODIUM ION' NA 6 SPERMINE SPM 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 U n 1 4 A n 1 5 C n 1 6 G n 1 7 A n 1 8 A n 1 9 G n 1 10 G n 1 11 A n 1 12 A n 1 13 G n 1 14 G n 1 15 A n 1 16 U n 1 17 U n 1 18 G n 1 19 G n 1 20 U n 1 21 A n 1 22 U n 1 23 G n 1 24 U n 1 25 G n 1 26 G n 1 27 U n 1 28 A n 1 29 U n 1 30 A n 1 31 U n 1 32 U n 1 33 C n 1 34 G n 1 35 U n 1 36 A n 1 37 G n 1 38 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 38 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'synthetic construct' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 32630 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 EKJ non-polymer . '4-[(3-{2-[(2-methoxyethyl)amino]-2-oxoethyl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium' ? 'C23 H25 N3 O2 S 2' 407.529 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 U 3 3 3 U U A . n A 1 4 A 4 4 4 A A A . n A 1 5 C 5 5 5 C C A . n A 1 6 G 6 6 6 G G A . n A 1 7 A 7 7 7 A A A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 A 11 11 11 A A A . n A 1 12 A 12 12 12 A A A . n A 1 13 G 13 13 13 G G A . n A 1 14 G 14 14 14 G G A . n A 1 15 A 15 15 15 A A A . n A 1 16 U 16 16 16 U U A . n A 1 17 U 17 17 17 U U A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 A 21 21 21 A A A . n A 1 22 U 22 22 22 U U A . n A 1 23 G 23 23 23 G G A . n A 1 24 U 24 24 24 U U A . n A 1 25 G 25 25 25 G G A . n A 1 26 G 26 26 26 G G A . n A 1 27 U 27 27 27 U U A . n A 1 28 A 28 28 28 A A A . n A 1 29 U 29 29 29 U U A . n A 1 30 A 30 30 30 A A A . n A 1 31 U 31 31 31 U U A . n A 1 32 U 32 32 32 U U A . n A 1 33 C 33 33 33 C C A . n A 1 34 G 34 34 34 G G A . n A 1 35 U 35 35 35 U U A . n A 1 36 A 36 36 36 A A A . n A 1 37 G 37 37 37 G G A . n A 1 38 C 38 38 38 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 C 2 2 2 C C B . n B 1 3 U 3 3 3 U U B . n B 1 4 A 4 4 4 A A B . n B 1 5 C 5 5 5 C C B . n B 1 6 G 6 6 6 G G B . n B 1 7 A 7 7 7 A A B . n B 1 8 A 8 8 8 A A B . n B 1 9 G 9 9 9 G G B . n B 1 10 G 10 10 10 G G B . n B 1 11 A 11 11 11 A A B . n B 1 12 A 12 12 12 A A B . n B 1 13 G 13 13 13 G G B . n B 1 14 G 14 14 14 G G B . n B 1 15 A 15 15 15 A A B . n B 1 16 U 16 16 16 U U B . n B 1 17 U 17 17 17 U U B . n B 1 18 G 18 18 18 G G B . n B 1 19 G 19 19 19 G G B . n B 1 20 U 20 20 20 U U B . n B 1 21 A 21 21 21 A A B . n B 1 22 U 22 22 22 U U B . n B 1 23 G 23 23 23 G G B . n B 1 24 U 24 24 24 U U B . n B 1 25 G 25 25 25 G G B . n B 1 26 G 26 26 26 G G B . n B 1 27 U 27 27 27 U U B . n B 1 28 A 28 28 28 A A B . n B 1 29 U 29 29 29 U U B . n B 1 30 A 30 30 30 A A B . n B 1 31 U 31 31 31 U U B . n B 1 32 U 32 32 32 U U B . n B 1 33 C 33 33 33 C C B . n B 1 34 G 34 34 34 G G B . n B 1 35 U 35 35 35 U U B . n B 1 36 A 36 36 36 A A B . n B 1 37 G 37 37 37 G G B . n B 1 38 C 38 38 38 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EKJ 1 101 1 EKJ TO1 A . D 3 K 1 102 3 K K A . E 4 MG 1 103 5 MG MG A . F 5 NA 1 104 6 NA NA A . G 2 EKJ 1 101 2 EKJ TO1 B . H 5 NA 1 102 1 NA NA B . I 3 K 1 103 2 K K B . J 4 MG 1 104 4 MG MG B . K 5 NA 1 105 7 NA NA B . L 5 NA 1 106 8 NA NA B . M 6 SPM 1 107 1 SPM SPM B . N 7 HOH 1 201 1 HOH HOH A . N 7 HOH 2 202 21 HOH HOH A . N 7 HOH 3 203 4 HOH HOH A . N 7 HOH 4 204 3 HOH HOH A . N 7 HOH 5 205 27 HOH HOH A . N 7 HOH 6 206 5 HOH HOH A . N 7 HOH 7 207 17 HOH HOH A . N 7 HOH 8 208 16 HOH HOH A . N 7 HOH 9 209 6 HOH HOH A . N 7 HOH 10 210 2 HOH HOH A . N 7 HOH 11 211 23 HOH HOH A . N 7 HOH 12 212 25 HOH HOH A . N 7 HOH 13 213 22 HOH HOH A . N 7 HOH 14 214 8 HOH HOH A . N 7 HOH 15 215 7 HOH HOH A . N 7 HOH 16 216 18 HOH HOH A . N 7 HOH 17 217 24 HOH HOH A . O 7 HOH 1 201 11 HOH HOH B . O 7 HOH 2 202 15 HOH HOH B . O 7 HOH 3 203 14 HOH HOH B . O 7 HOH 4 204 28 HOH HOH B . O 7 HOH 5 205 19 HOH HOH B . O 7 HOH 6 206 13 HOH HOH B . O 7 HOH 7 207 12 HOH HOH B . O 7 HOH 8 208 20 HOH HOH B . O 7 HOH 9 209 10 HOH HOH B . O 7 HOH 10 210 9 HOH HOH B . O 7 HOH 11 211 26 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.14_3260: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6E8S _cell.details ? _cell.formula_units_Z ? _cell.length_a 63.031 _cell.length_a_esd ? _cell.length_b 67.585 _cell.length_b_esd ? _cell.length_c 76.667 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E8S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6E8S _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.31 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.04 M NaCacadylate pH6.5, 0.08 M NaCl, 0.012 M KCl, 0.02 M MgCl2, 0.012M Spermine, 5.5% Sucrose, 31% MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-05-07 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.495 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.495 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6E8S _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.35 _reflns.d_resolution_low 46.1 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14124 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 50.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.43 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1239 _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.6 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6E8S _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.350 _refine.ls_d_res_low 38.333 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14124 _refine.ls_number_reflns_R_free 1411 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.70 _refine.ls_percent_reflns_R_free 9.99 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1849 _refine.ls_R_factor_R_free 0.2075 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1823 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.59 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.38 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1632 _refine_hist.pdbx_number_atoms_ligand 80 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 1740 _refine_hist.d_res_high 2.350 _refine_hist.d_res_low 38.333 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 1906 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.262 ? 2950 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 16.260 ? 929 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.049 ? 378 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 ? 82 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.3500 2.4339 . . 135 1239 98.00 . . . 0.3555 . 0.3217 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4339 2.5314 . . 126 1243 100.00 . . . 0.3755 . 0.3142 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5314 2.6465 . . 154 1238 100.00 . . . 0.3548 . 0.2950 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6465 2.7860 . . 136 1251 100.00 . . . 0.3720 . 0.3292 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7860 2.9605 . . 139 1271 100.00 . . . 0.3666 . 0.3050 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9605 3.1890 . . 144 1272 100.00 . . . 0.2515 . 0.2398 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1890 3.5097 . . 134 1272 100.00 . . . 0.2775 . 0.1886 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5097 4.0171 . . 145 1273 100.00 . . . 0.1788 . 0.1853 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.0171 5.0593 . . 145 1291 100.00 . . . 0.1676 . 0.1426 . . . . . . . . . . 'X-RAY DIFFRACTION' 5.0593 38.3386 . . 153 1363 99.00 . . . 0.1594 . 0.1410 . . . . . . . . . . # _struct.entry_id 6E8S _struct.title 'Structure of the iMango-III aptamer bound to TO1-Biotin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6E8S _struct_keywords.text 'Aptamer, fluorescence, RNA, G-quadruplex' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 2 ? H N N 5 ? I N N 3 ? J N N 4 ? K N N 5 ? L N N 5 ? M N N 6 ? N N N 7 ? O N N 7 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6E8S _struct_ref.pdbx_db_accession 6E8S _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6E8S A 1 ? 38 ? 6E8S 1 ? 38 ? 1 38 2 1 6E8S B 1 ? 38 ? 6E8S 1 ? 38 ? 1 38 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,N 2 1 B,G,H,I,J,K,L,M,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 9 O6 ? ? ? 1_555 D K . K ? ? A G 9 A K 102 1_555 ? ? ? ? ? ? ? 2.816 ? ? metalc2 metalc ? ? A G 10 O6 ? ? ? 1_555 D K . K ? ? A G 10 A K 102 1_555 ? ? ? ? ? ? ? 2.795 ? ? metalc3 metalc ? ? A A 12 OP1 ? ? ? 1_555 F NA . NA ? ? A A 12 A NA 104 1_555 ? ? ? ? ? ? ? 2.660 ? ? metalc4 metalc ? ? A G 13 O6 ? ? ? 1_555 D K . K ? ? A G 13 A K 102 1_555 ? ? ? ? ? ? ? 2.874 ? ? metalc5 metalc ? ? A G 14 O6 ? ? ? 1_555 D K . K ? ? A G 14 A K 102 1_555 ? ? ? ? ? ? ? 2.729 ? ? metalc6 metalc ? ? A G 18 O6 ? ? ? 1_555 D K . K ? ? A G 18 A K 102 1_555 ? ? ? ? ? ? ? 2.868 ? ? metalc7 metalc ? ? A G 19 O6 ? ? ? 1_555 D K . K ? ? A G 19 A K 102 1_555 ? ? ? ? ? ? ? 2.717 ? ? metalc8 metalc ? ? A G 23 O6 ? ? ? 1_555 D K . K ? ? A G 23 A K 102 1_555 ? ? ? ? ? ? ? 2.671 ? ? metalc9 metalc ? ? A G 25 O6 ? ? ? 1_555 D K . K ? ? A G 25 A K 102 1_555 ? ? ? ? ? ? ? 2.903 ? ? metalc10 metalc ? ? F NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 104 A HOH 201 1_555 ? ? ? ? ? ? ? 3.190 ? ? metalc11 metalc ? ? F NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 104 A HOH 203 1_555 ? ? ? ? ? ? ? 2.740 ? ? metalc12 metalc ? ? F NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 104 A HOH 204 1_555 ? ? ? ? ? ? ? 2.851 ? ? metalc13 metalc ? ? F NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 104 A HOH 206 1_555 ? ? ? ? ? ? ? 2.519 ? ? metalc14 metalc ? ? F NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 104 A HOH 209 1_555 ? ? ? ? ? ? ? 3.052 ? ? metalc15 metalc ? ? B G 9 O6 ? ? ? 1_555 I K . K ? ? B G 9 B K 103 1_555 ? ? ? ? ? ? ? 2.733 ? ? metalc16 metalc ? ? B G 10 O6 ? ? ? 1_555 I K . K ? ? B G 10 B K 103 1_555 ? ? ? ? ? ? ? 2.692 ? ? metalc17 metalc ? ? B A 12 OP1 ? ? ? 1_555 L NA . NA ? ? B A 12 B NA 106 1_555 ? ? ? ? ? ? ? 2.601 ? ? metalc18 metalc ? ? B G 13 O6 ? ? ? 1_555 I K . K ? ? B G 13 B K 103 1_555 ? ? ? ? ? ? ? 2.692 ? ? metalc19 metalc ? ? B G 14 O6 ? ? ? 1_555 I K . K ? ? B G 14 B K 103 1_555 ? ? ? ? ? ? ? 2.683 ? ? metalc20 metalc ? ? B A 15 "O3'" ? ? ? 1_555 H NA . NA ? ? B A 15 B NA 102 1_555 ? ? ? ? ? ? ? 2.951 ? ? metalc21 metalc ? ? B A 15 "O2'" ? ? ? 1_555 H NA . NA ? ? B A 15 B NA 102 1_555 ? ? ? ? ? ? ? 2.488 ? ? metalc22 metalc ? ? B G 18 O6 ? ? ? 1_555 I K . K ? ? B G 18 B K 103 1_555 ? ? ? ? ? ? ? 2.844 ? ? metalc23 metalc ? ? B G 19 O6 ? ? ? 1_555 I K . K ? ? B G 19 B K 103 1_555 ? ? ? ? ? ? ? 2.658 ? ? metalc24 metalc ? ? B G 23 O6 ? ? ? 1_555 I K . K ? ? B G 23 B K 103 1_555 ? ? ? ? ? ? ? 2.668 ? ? metalc25 metalc ? ? B G 25 O6 ? ? ? 1_555 I K . K ? ? B G 25 B K 103 1_555 ? ? ? ? ? ? ? 2.777 ? ? metalc26 metalc ? ? L NA . NA ? ? ? 1_555 O HOH . O ? ? B NA 106 B HOH 201 1_555 ? ? ? ? ? ? ? 2.411 ? ? metalc27 metalc ? ? L NA . NA ? ? ? 1_555 O HOH . O ? ? B NA 106 B HOH 202 1_555 ? ? ? ? ? ? ? 2.692 ? ? metalc28 metalc ? ? L NA . NA ? ? ? 1_555 O HOH . O ? ? B NA 106 B HOH 203 1_555 ? ? ? ? ? ? ? 3.116 ? ? metalc29 metalc ? ? L NA . NA ? ? ? 1_555 O HOH . O ? ? B NA 106 B HOH 206 1_555 ? ? ? ? ? ? ? 3.129 ? ? metalc30 metalc ? ? L NA . NA ? ? ? 1_555 O HOH . O ? ? B NA 106 B HOH 207 1_555 ? ? ? ? ? ? ? 2.258 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 1 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 1 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 1 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 2 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 2 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 2 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 36 N1 ? ? A U 3 A A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 36 N6 ? ? A U 3 A A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 35 N3 ? ? A A 4 A U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 35 O4 ? ? A A 4 A U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 34 N1 ? ? A C 5 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 34 O6 ? ? A C 5 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 34 N2 ? ? A C 5 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 6 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 6 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 6 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 32 N3 ? ? A A 7 A U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 32 O4 ? ? A A 7 A U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 8 N1 ? ? ? 1_555 A U 31 N3 ? ? A A 8 A U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 8 N6 ? ? ? 1_555 A U 31 O4 ? ? A A 8 A U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 9 N1 ? ? ? 1_555 A G 13 O6 ? ? A G 9 A G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A G 9 N2 ? ? ? 1_555 A G 13 N7 ? ? A G 9 A G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A G 9 N7 ? ? ? 1_555 A G 25 N2 ? ? A G 9 A G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A G 9 O6 ? ? ? 1_555 A G 25 N1 ? ? A G 9 A G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A G 10 N1 ? ? ? 1_555 A G 14 O6 ? ? A G 10 A G 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A G 10 N2 ? ? ? 1_555 A G 14 N7 ? ? A G 10 A G 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A G 10 N7 ? ? ? 1_555 A G 23 N2 ? ? A G 10 A G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 23 N1 ? ? A G 10 A G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A A 12 N6 ? ? ? 1_555 A U 24 O4 ? ? A A 12 A U 24 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog30 hydrog ? ? A G 13 N1 ? ? ? 1_555 A G 18 O6 ? ? A G 13 A G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A G 13 N2 ? ? ? 1_555 A G 18 N7 ? ? A G 13 A G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A G 14 N1 ? ? ? 1_555 A G 19 O6 ? ? A G 14 A G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? A G 14 N2 ? ? ? 1_555 A G 19 N7 ? ? A G 14 A G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 22 N3 ? ? A A 15 A U 22 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog35 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 22 O2 ? ? A A 15 A U 22 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog36 hydrog ? ? A G 18 N1 ? ? ? 1_555 A G 25 O6 ? ? A G 18 A G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? A G 18 N2 ? ? ? 1_555 A G 25 N7 ? ? A G 18 A G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? A G 19 N1 ? ? ? 1_555 A G 23 O6 ? ? A G 19 A G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? A G 19 N2 ? ? ? 1_555 A G 23 N7 ? ? A G 19 A G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? A G 19 N1 ? ? ? 1_555 A G 25 O6 ? ? A G 19 A G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog41 hydrog ? ? A G 19 N2 ? ? ? 1_555 A G 25 N7 ? ? A G 19 A G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog42 hydrog ? ? A U 20 N3 ? ? ? 1_555 A U 27 O2 ? ? A U 20 A U 27 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog43 hydrog ? ? A U 20 O2 ? ? ? 1_555 A U 27 N3 ? ? A U 20 A U 27 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog44 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 28 N7 ? ? A A 21 A A 28 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog45 hydrog ? ? A A 21 N7 ? ? ? 1_555 A A 28 N6 ? ? A A 21 A A 28 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog46 hydrog ? ? A U 24 O2 ? ? ? 1_555 A A 30 N6 ? ? A U 24 A A 30 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog47 hydrog ? ? A G 26 N2 ? ? ? 1_555 A U 29 O4 ? ? A G 26 A U 29 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog48 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 38 N3 ? ? B G 1 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 38 O2 ? ? B G 1 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 38 N4 ? ? B G 1 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 37 N1 ? ? B C 2 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 37 O6 ? ? B C 2 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 37 N2 ? ? B C 2 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B U 3 N3 ? ? ? 1_555 B A 36 N1 ? ? B U 3 B A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B U 3 O4 ? ? ? 1_555 B A 36 N6 ? ? B U 3 B A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 35 N3 ? ? B A 4 B U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 35 O4 ? ? B A 4 B U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 34 N1 ? ? B C 5 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 34 O6 ? ? B C 5 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 34 N2 ? ? B C 5 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 33 N3 ? ? B G 6 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 33 O2 ? ? B G 6 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 33 N4 ? ? B G 6 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B A 7 N1 ? ? ? 1_555 B U 32 N3 ? ? B A 7 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B A 7 N6 ? ? ? 1_555 B U 32 O4 ? ? B A 7 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B A 8 N1 ? ? ? 1_555 B U 31 N3 ? ? B A 8 B U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B A 8 N6 ? ? ? 1_555 B U 31 O4 ? ? B A 8 B U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B G 9 N1 ? ? ? 1_555 B G 13 O6 ? ? B G 9 B G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog69 hydrog ? ? B G 9 N2 ? ? ? 1_555 B G 13 N7 ? ? B G 9 B G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog70 hydrog ? ? B G 9 N7 ? ? ? 1_555 B G 25 N2 ? ? B G 9 B G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog71 hydrog ? ? B G 9 O6 ? ? ? 1_555 B G 25 N1 ? ? B G 9 B G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog72 hydrog ? ? B G 10 N1 ? ? ? 1_555 B G 14 O6 ? ? B G 10 B G 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog73 hydrog ? ? B G 10 N2 ? ? ? 1_555 B G 14 N7 ? ? B G 10 B G 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog74 hydrog ? ? B G 10 N7 ? ? ? 1_555 B G 23 N2 ? ? B G 10 B G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog75 hydrog ? ? B G 10 O6 ? ? ? 1_555 B G 23 N1 ? ? B G 10 B G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog76 hydrog ? ? B A 12 N6 ? ? ? 1_555 B U 24 O4 ? ? B A 12 B U 24 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog77 hydrog ? ? B G 13 N1 ? ? ? 1_555 B G 18 O6 ? ? B G 13 B G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog78 hydrog ? ? B G 13 N2 ? ? ? 1_555 B G 18 N7 ? ? B G 13 B G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog79 hydrog ? ? B G 14 N1 ? ? ? 1_555 B G 19 O6 ? ? B G 14 B G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog80 hydrog ? ? B G 14 N2 ? ? ? 1_555 B G 19 N7 ? ? B G 14 B G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog81 hydrog ? ? B A 15 N1 ? ? ? 1_555 B U 22 N3 ? ? B A 15 B U 22 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog82 hydrog ? ? B A 15 N6 ? ? ? 1_555 B U 22 O2 ? ? B A 15 B U 22 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog83 hydrog ? ? B G 18 N1 ? ? ? 1_555 B G 25 O6 ? ? B G 18 B G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog84 hydrog ? ? B G 18 N2 ? ? ? 1_555 B G 25 N7 ? ? B G 18 B G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog85 hydrog ? ? B G 19 N1 ? ? ? 1_555 B G 23 O6 ? ? B G 19 B G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog86 hydrog ? ? B G 19 N2 ? ? ? 1_555 B G 23 N7 ? ? B G 19 B G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog87 hydrog ? ? B G 19 N1 ? ? ? 1_555 B G 25 O6 ? ? B G 19 B G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog88 hydrog ? ? B G 19 N2 ? ? ? 1_555 B G 25 N7 ? ? B G 19 B G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog89 hydrog ? ? B U 20 N3 ? ? ? 1_555 B U 27 O2 ? ? B U 20 B U 27 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog90 hydrog ? ? B U 20 O2 ? ? ? 1_555 B U 27 N3 ? ? B U 20 B U 27 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog91 hydrog ? ? B A 21 N6 ? ? ? 1_555 B A 28 N7 ? ? B A 21 B A 28 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog92 hydrog ? ? B A 21 N7 ? ? ? 1_555 B A 28 N6 ? ? B A 21 B A 28 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog93 hydrog ? ? B U 24 O2 ? ? ? 1_555 B A 30 N6 ? ? B U 24 B A 30 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog94 hydrog ? ? B G 26 N2 ? ? ? 1_555 B U 29 O4 ? ? B G 26 B U 29 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 9 ? A G 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 10 ? A G 10 ? 1_555 72.3 ? 2 O6 ? A G 9 ? A G 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 13 ? A G 13 ? 1_555 69.4 ? 3 O6 ? A G 10 ? A G 10 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 13 ? A G 13 ? 1_555 83.8 ? 4 O6 ? A G 9 ? A G 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 14 ? A G 14 ? 1_555 134.2 ? 5 O6 ? A G 10 ? A G 10 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 14 ? A G 14 ? 1_555 77.8 ? 6 O6 ? A G 13 ? A G 13 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 14 ? A G 14 ? 1_555 73.6 ? 7 O6 ? A G 9 ? A G 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 18 ? A G 18 ? 1_555 115.1 ? 8 O6 ? A G 10 ? A G 10 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 18 ? A G 18 ? 1_555 155.8 ? 9 O6 ? A G 13 ? A G 13 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 18 ? A G 18 ? 1_555 78.1 ? 10 O6 ? A G 14 ? A G 14 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 18 ? A G 18 ? 1_555 81.7 ? 11 O6 ? A G 9 ? A G 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 19 ? A G 19 ? 1_555 156.7 ? 12 O6 ? A G 10 ? A G 10 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 19 ? A G 19 ? 1_555 120.3 ? 13 O6 ? A G 13 ? A G 13 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 19 ? A G 19 ? 1_555 128.4 ? 14 O6 ? A G 14 ? A G 14 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 19 ? A G 19 ? 1_555 69.1 ? 15 O6 ? A G 18 ? A G 18 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 19 ? A G 19 ? 1_555 62.5 ? 16 O6 ? A G 9 ? A G 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 86.9 ? 17 O6 ? A G 10 ? A G 10 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 75.0 ? 18 O6 ? A G 13 ? A G 13 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 152.2 ? 19 O6 ? A G 14 ? A G 14 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 117.9 ? 20 O6 ? A G 18 ? A G 18 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 126.9 ? 21 O6 ? A G 19 ? A G 19 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 78.6 ? 22 O6 ? A G 9 ? A G 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 25 ? A G 25 ? 1_555 76.1 ? 23 O6 ? A G 10 ? A G 10 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 25 ? A G 25 ? 1_555 129.3 ? 24 O6 ? A G 13 ? A G 13 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 25 ? A G 25 ? 1_555 120.3 ? 25 O6 ? A G 14 ? A G 14 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 25 ? A G 25 ? 1_555 148.1 ? 26 O6 ? A G 18 ? A G 18 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 25 ? A G 25 ? 1_555 74.4 ? 27 O6 ? A G 19 ? A G 19 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 25 ? A G 25 ? 1_555 81.2 ? 28 O6 ? A G 23 ? A G 23 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A G 25 ? A G 25 ? 1_555 64.6 ? 29 OP1 ? A A 12 ? A A 12 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? N HOH . ? A HOH 201 ? 1_555 43.1 ? 30 OP1 ? A A 12 ? A A 12 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? N HOH . ? A HOH 203 ? 1_555 89.0 ? 31 O ? N HOH . ? A HOH 201 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? N HOH . ? A HOH 203 ? 1_555 45.9 ? 32 OP1 ? A A 12 ? A A 12 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? N HOH . ? A HOH 204 ? 1_555 57.3 ? 33 O ? N HOH . ? A HOH 201 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? N HOH . ? A HOH 204 ? 1_555 44.7 ? 34 O ? N HOH . ? A HOH 203 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? N HOH . ? A HOH 204 ? 1_555 59.4 ? 35 OP1 ? A A 12 ? A A 12 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? N HOH . ? A HOH 206 ? 1_555 70.8 ? 36 O ? N HOH . ? A HOH 201 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? N HOH . ? A HOH 206 ? 1_555 51.4 ? 37 O ? N HOH . ? A HOH 203 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? N HOH . ? A HOH 206 ? 1_555 58.3 ? 38 O ? N HOH . ? A HOH 204 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? N HOH . ? A HOH 206 ? 1_555 95.5 ? 39 OP1 ? A A 12 ? A A 12 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? N HOH . ? A HOH 209 ? 1_555 60.7 ? 40 O ? N HOH . ? A HOH 201 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? N HOH . ? A HOH 209 ? 1_555 98.0 ? 41 O ? N HOH . ? A HOH 203 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? N HOH . ? A HOH 209 ? 1_555 137.9 ? 42 O ? N HOH . ? A HOH 204 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? N HOH . ? A HOH 209 ? 1_555 114.3 ? 43 O ? N HOH . ? A HOH 206 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? N HOH . ? A HOH 209 ? 1_555 83.1 ? 44 O6 ? B G 9 ? B G 9 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 10 ? B G 10 ? 1_555 78.1 ? 45 O6 ? B G 9 ? B G 9 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 13 ? B G 13 ? 1_555 70.5 ? 46 O6 ? B G 10 ? B G 10 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 13 ? B G 13 ? 1_555 88.5 ? 47 O6 ? B G 9 ? B G 9 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 14 ? B G 14 ? 1_555 134.5 ? 48 O6 ? B G 10 ? B G 10 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 14 ? B G 14 ? 1_555 74.5 ? 49 O6 ? B G 13 ? B G 13 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 14 ? B G 14 ? 1_555 73.2 ? 50 O6 ? B G 9 ? B G 9 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 18 ? B G 18 ? 1_555 110.7 ? 51 O6 ? B G 10 ? B G 10 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 18 ? B G 18 ? 1_555 158.0 ? 52 O6 ? B G 13 ? B G 13 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 18 ? B G 18 ? 1_555 76.3 ? 53 O6 ? B G 14 ? B G 14 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 18 ? B G 18 ? 1_555 85.9 ? 54 O6 ? B G 9 ? B G 9 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 19 ? B G 19 ? 1_555 153.6 ? 55 O6 ? B G 10 ? B G 10 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 19 ? B G 19 ? 1_555 117.3 ? 56 O6 ? B G 13 ? B G 13 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 19 ? B G 19 ? 1_555 127.7 ? 57 O6 ? B G 14 ? B G 14 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 19 ? B G 19 ? 1_555 71.9 ? 58 O6 ? B G 18 ? B G 18 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 19 ? B G 19 ? 1_555 63.6 ? 59 O6 ? B G 9 ? B G 9 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 23 ? B G 23 ? 1_555 88.1 ? 60 O6 ? B G 10 ? B G 10 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 23 ? B G 23 ? 1_555 75.9 ? 61 O6 ? B G 13 ? B G 13 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 23 ? B G 23 ? 1_555 155.9 ? 62 O6 ? B G 14 ? B G 14 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 23 ? B G 23 ? 1_555 118.6 ? 63 O6 ? B G 18 ? B G 18 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 23 ? B G 23 ? 1_555 123.2 ? 64 O6 ? B G 19 ? B G 19 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 23 ? B G 23 ? 1_555 76.2 ? 65 O6 ? B G 9 ? B G 9 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 25 ? B G 25 ? 1_555 75.2 ? 66 O6 ? B G 10 ? B G 10 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 25 ? B G 25 ? 1_555 130.1 ? 67 O6 ? B G 13 ? B G 13 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 25 ? B G 25 ? 1_555 120.0 ? 68 O6 ? B G 14 ? B G 14 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 25 ? B G 25 ? 1_555 148.8 ? 69 O6 ? B G 18 ? B G 18 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 25 ? B G 25 ? 1_555 71.8 ? 70 O6 ? B G 19 ? B G 19 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 25 ? B G 25 ? 1_555 78.6 ? 71 O6 ? B G 23 ? B G 23 ? 1_555 K ? I K . ? B K 103 ? 1_555 O6 ? B G 25 ? B G 25 ? 1_555 61.9 ? 72 OP1 ? B A 12 ? B A 12 ? 1_555 NA ? L NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 201 ? 1_555 76.2 ? 73 OP1 ? B A 12 ? B A 12 ? 1_555 NA ? L NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 202 ? 1_555 56.0 ? 74 O ? O HOH . ? B HOH 201 ? 1_555 NA ? L NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 202 ? 1_555 106.3 ? 75 OP1 ? B A 12 ? B A 12 ? 1_555 NA ? L NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 203 ? 1_555 50.6 ? 76 O ? O HOH . ? B HOH 201 ? 1_555 NA ? L NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 203 ? 1_555 56.1 ? 77 O ? O HOH . ? B HOH 202 ? 1_555 NA ? L NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 203 ? 1_555 50.3 ? 78 OP1 ? B A 12 ? B A 12 ? 1_555 NA ? L NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 206 ? 1_555 62.1 ? 79 O ? O HOH . ? B HOH 201 ? 1_555 NA ? L NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 206 ? 1_555 83.0 ? 80 O ? O HOH . ? B HOH 202 ? 1_555 NA ? L NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 206 ? 1_555 111.8 ? 81 O ? O HOH . ? B HOH 203 ? 1_555 NA ? L NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 206 ? 1_555 105.9 ? 82 OP1 ? B A 12 ? B A 12 ? 1_555 NA ? L NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 207 ? 1_555 89.3 ? 83 O ? O HOH . ? B HOH 201 ? 1_555 NA ? L NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 207 ? 1_555 66.5 ? 84 O ? O HOH . ? B HOH 202 ? 1_555 NA ? L NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 207 ? 1_555 61.2 ? 85 O ? O HOH . ? B HOH 203 ? 1_555 NA ? L NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 207 ? 1_555 39.5 ? 86 O ? O HOH . ? B HOH 206 ? 1_555 NA ? L NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 207 ? 1_555 142.8 ? 87 "O3'" ? B A 15 ? B A 15 ? 1_555 NA ? H NA . ? B NA 102 ? 1_555 "O2'" ? B A 15 ? B A 15 ? 1_555 60.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EKJ 101 ? 8 'binding site for residue EKJ A 101' AC2 Software A K 102 ? 8 'binding site for residue K A 102' AC3 Software A MG 103 ? 2 'binding site for residue MG A 103' AC4 Software A NA 104 ? 7 'binding site for residue NA A 104' AC5 Software B EKJ 101 ? 8 'binding site for residue EKJ B 101' AC6 Software B NA 102 ? 5 'binding site for residue NA B 102' AC7 Software B K 103 ? 8 'binding site for residue K B 103' AC8 Software B MG 104 ? 1 'binding site for residue MG B 104' AC9 Software B NA 105 ? 1 'binding site for residue NA B 105' AD1 Software B NA 106 ? 6 'binding site for residue NA B 106' AD2 Software B SPM 107 ? 13 'binding site for residue SPM B 107' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 G A 10 ? G A 10 . ? 1_555 ? 2 AC1 8 G A 14 ? G A 14 . ? 1_555 ? 3 AC1 8 A A 15 ? A A 15 . ? 1_555 ? 4 AC1 8 U A 17 ? U A 17 . ? 1_555 ? 5 AC1 8 G A 19 ? G A 19 . ? 1_555 ? 6 AC1 8 U A 22 ? U A 22 . ? 1_555 ? 7 AC1 8 G A 23 ? G A 23 . ? 1_555 ? 8 AC1 8 SPM M . ? SPM B 107 . ? 1_555 ? 9 AC2 8 G A 9 ? G A 9 . ? 1_555 ? 10 AC2 8 G A 10 ? G A 10 . ? 1_555 ? 11 AC2 8 G A 13 ? G A 13 . ? 1_555 ? 12 AC2 8 G A 14 ? G A 14 . ? 1_555 ? 13 AC2 8 G A 18 ? G A 18 . ? 1_555 ? 14 AC2 8 G A 19 ? G A 19 . ? 1_555 ? 15 AC2 8 G A 23 ? G A 23 . ? 1_555 ? 16 AC2 8 G A 25 ? G A 25 . ? 1_555 ? 17 AC3 2 A A 7 ? A A 7 . ? 1_555 ? 18 AC3 2 U A 31 ? U A 31 . ? 1_555 ? 19 AC4 7 G A 9 ? G A 9 . ? 1_555 ? 20 AC4 7 G A 10 ? G A 10 . ? 1_555 ? 21 AC4 7 A A 12 ? A A 12 . ? 1_555 ? 22 AC4 7 HOH N . ? HOH A 203 . ? 1_555 ? 23 AC4 7 HOH N . ? HOH A 204 . ? 1_555 ? 24 AC4 7 HOH N . ? HOH A 206 . ? 1_555 ? 25 AC4 7 HOH N . ? HOH A 209 . ? 1_555 ? 26 AC5 8 G B 10 ? G B 10 . ? 1_555 ? 27 AC5 8 G B 14 ? G B 14 . ? 1_555 ? 28 AC5 8 A B 15 ? A B 15 . ? 1_555 ? 29 AC5 8 U B 17 ? U B 17 . ? 1_555 ? 30 AC5 8 G B 19 ? G B 19 . ? 1_555 ? 31 AC5 8 U B 22 ? U B 22 . ? 1_555 ? 32 AC5 8 G B 23 ? G B 23 . ? 1_555 ? 33 AC5 8 SPM M . ? SPM B 107 . ? 1_555 ? 34 AC6 5 A A 21 ? A A 21 . ? 1_555 ? 35 AC6 5 U A 22 ? U A 22 . ? 1_555 ? 36 AC6 5 A B 15 ? A B 15 . ? 1_555 ? 37 AC6 5 U B 16 ? U B 16 . ? 1_555 ? 38 AC6 5 SPM M . ? SPM B 107 . ? 1_555 ? 39 AC7 8 G B 9 ? G B 9 . ? 1_555 ? 40 AC7 8 G B 10 ? G B 10 . ? 1_555 ? 41 AC7 8 G B 13 ? G B 13 . ? 1_555 ? 42 AC7 8 G B 14 ? G B 14 . ? 1_555 ? 43 AC7 8 G B 18 ? G B 18 . ? 1_555 ? 44 AC7 8 G B 19 ? G B 19 . ? 1_555 ? 45 AC7 8 G B 23 ? G B 23 . ? 1_555 ? 46 AC7 8 G B 25 ? G B 25 . ? 1_555 ? 47 AC8 1 G B 6 ? G B 6 . ? 1_555 ? 48 AC9 1 U B 31 ? U B 31 . ? 1_555 ? 49 AD1 6 G B 9 ? G B 9 . ? 1_555 ? 50 AD1 6 G B 10 ? G B 10 . ? 1_555 ? 51 AD1 6 A B 12 ? A B 12 . ? 1_555 ? 52 AD1 6 HOH O . ? HOH B 201 . ? 1_555 ? 53 AD1 6 HOH O . ? HOH B 202 . ? 1_555 ? 54 AD1 6 HOH O . ? HOH B 207 . ? 1_555 ? 55 AD2 13 U A 16 ? U A 16 . ? 1_555 ? 56 AD2 13 U A 17 ? U A 17 . ? 1_555 ? 57 AD2 13 G A 19 ? G A 19 . ? 1_555 ? 58 AD2 13 A A 21 ? A A 21 . ? 1_555 ? 59 AD2 13 U A 22 ? U A 22 . ? 1_555 ? 60 AD2 13 EKJ C . ? EKJ A 101 . ? 1_555 ? 61 AD2 13 A B 15 ? A B 15 . ? 1_555 ? 62 AD2 13 U B 16 ? U B 16 . ? 1_555 ? 63 AD2 13 U B 17 ? U B 17 . ? 1_555 ? 64 AD2 13 A B 21 ? A B 21 . ? 1_555 ? 65 AD2 13 U B 22 ? U B 22 . ? 1_555 ? 66 AD2 13 EKJ G . ? EKJ B 101 . ? 1_555 ? 67 AD2 13 NA H . ? NA B 102 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 B U 16 ? ? N14 B SPM 107 ? ? 1.30 2 1 O B HOH 203 ? ? O B HOH 207 ? ? 1.99 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 U _pdbx_validate_rmsd_angle.auth_seq_id_1 24 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 U _pdbx_validate_rmsd_angle.auth_seq_id_2 24 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 U _pdbx_validate_rmsd_angle.auth_seq_id_3 24 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 100.26 _pdbx_validate_rmsd_angle.angle_target_value 105.70 _pdbx_validate_rmsd_angle.angle_deviation -5.44 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 EKJ C10 C Y N 73 EKJ C11 C N N 74 EKJ C12 C Y N 75 EKJ C01 C N N 76 EKJ C03 C N N 77 EKJ C04 C N N 78 EKJ C06 C N N 79 EKJ C08 C N N 80 EKJ C13 C Y N 81 EKJ C14 C Y N 82 EKJ C16 C N N 83 EKJ C17 C Y N 84 EKJ C18 C Y N 85 EKJ C19 C Y N 86 EKJ C20 C Y N 87 EKJ C21 C Y N 88 EKJ C22 C Y N 89 EKJ C24 C Y N 90 EKJ C25 C Y N 91 EKJ C26 C Y N 92 EKJ C27 C Y N 93 EKJ C28 C Y N 94 EKJ C29 C Y N 95 EKJ N05 N N N 96 EKJ N09 N Y N 97 EKJ N15 N Y N 98 EKJ O02 O N N 99 EKJ O07 O N N 100 EKJ S23 S Y N 101 EKJ H111 H N N 102 EKJ H1 H N N 103 EKJ H011 H N N 104 EKJ H012 H N N 105 EKJ H013 H N N 106 EKJ H031 H N N 107 EKJ H032 H N N 108 EKJ H042 H N N 109 EKJ H041 H N N 110 EKJ H081 H N N 111 EKJ H082 H N N 112 EKJ H131 H N N 113 EKJ H141 H N N 114 EKJ H163 H N N 115 EKJ H161 H N N 116 EKJ H162 H N N 117 EKJ H181 H N N 118 EKJ H191 H N N 119 EKJ H201 H N N 120 EKJ H211 H N N 121 EKJ H251 H N N 122 EKJ H261 H N N 123 EKJ H271 H N N 124 EKJ H281 H N N 125 EKJ H051 H N N 126 G OP3 O N N 127 G P P N N 128 G OP1 O N N 129 G OP2 O N N 130 G "O5'" O N N 131 G "C5'" C N N 132 G "C4'" C N R 133 G "O4'" O N N 134 G "C3'" C N S 135 G "O3'" O N N 136 G "C2'" C N R 137 G "O2'" O N N 138 G "C1'" C N R 139 G N9 N Y N 140 G C8 C Y N 141 G N7 N Y N 142 G C5 C Y N 143 G C6 C N N 144 G O6 O N N 145 G N1 N N N 146 G C2 C N N 147 G N2 N N N 148 G N3 N N N 149 G C4 C Y N 150 G HOP3 H N N 151 G HOP2 H N N 152 G "H5'" H N N 153 G "H5''" H N N 154 G "H4'" H N N 155 G "H3'" H N N 156 G "HO3'" H N N 157 G "H2'" H N N 158 G "HO2'" H N N 159 G "H1'" H N N 160 G H8 H N N 161 G H1 H N N 162 G H21 H N N 163 G H22 H N N 164 HOH O O N N 165 HOH H1 H N N 166 HOH H2 H N N 167 K K K N N 168 MG MG MG N N 169 NA NA NA N N 170 SPM N1 N N N 171 SPM C2 C N N 172 SPM C3 C N N 173 SPM C4 C N N 174 SPM N5 N N N 175 SPM C6 C N N 176 SPM C7 C N N 177 SPM C8 C N N 178 SPM C9 C N N 179 SPM N10 N N N 180 SPM C11 C N N 181 SPM C12 C N N 182 SPM C13 C N N 183 SPM N14 N N N 184 SPM HN11 H N N 185 SPM HN12 H N N 186 SPM H21 H N N 187 SPM H22 H N N 188 SPM H31 H N N 189 SPM H32 H N N 190 SPM H41 H N N 191 SPM H42 H N N 192 SPM HN5 H N N 193 SPM H61 H N N 194 SPM H62 H N N 195 SPM H71 H N N 196 SPM H72 H N N 197 SPM H81 H N N 198 SPM H82 H N N 199 SPM H91 H N N 200 SPM H92 H N N 201 SPM HN0 H N N 202 SPM H111 H N N 203 SPM H112 H N N 204 SPM H121 H N N 205 SPM H122 H N N 206 SPM H131 H N N 207 SPM H132 H N N 208 SPM HN41 H N N 209 SPM HN42 H N N 210 U OP3 O N N 211 U P P N N 212 U OP1 O N N 213 U OP2 O N N 214 U "O5'" O N N 215 U "C5'" C N N 216 U "C4'" C N R 217 U "O4'" O N N 218 U "C3'" C N S 219 U "O3'" O N N 220 U "C2'" C N R 221 U "O2'" O N N 222 U "C1'" C N R 223 U N1 N N N 224 U C2 C N N 225 U O2 O N N 226 U N3 N N N 227 U C4 C N N 228 U O4 O N N 229 U C5 C N N 230 U C6 C N N 231 U HOP3 H N N 232 U HOP2 H N N 233 U "H5'" H N N 234 U "H5''" H N N 235 U "H4'" H N N 236 U "H3'" H N N 237 U "HO3'" H N N 238 U "H2'" H N N 239 U "HO2'" H N N 240 U "H1'" H N N 241 U H3 H N N 242 U H5 H N N 243 U H6 H N N 244 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 EKJ C10 C11 sing N N 76 EKJ C10 N09 doub Y N 77 EKJ C10 S23 sing Y N 78 EKJ C11 C12 sing N N 79 EKJ C12 C13 doub Y N 80 EKJ C12 C22 sing Y N 81 EKJ C01 O02 sing N N 82 EKJ C03 C04 sing N N 83 EKJ C03 O02 sing N N 84 EKJ C04 N05 sing N N 85 EKJ C06 C08 sing N N 86 EKJ C06 N05 sing N N 87 EKJ C06 O07 doub N N 88 EKJ C08 N09 sing N N 89 EKJ C13 C14 sing Y N 90 EKJ C14 N15 doub Y N 91 EKJ C16 N15 sing N N 92 EKJ C17 C18 doub Y N 93 EKJ C17 C22 sing Y N 94 EKJ C17 N15 sing Y N 95 EKJ C18 C19 sing Y N 96 EKJ C19 C20 doub Y N 97 EKJ C20 C21 sing Y N 98 EKJ C21 C22 doub Y N 99 EKJ C24 C25 doub Y N 100 EKJ C24 C29 sing Y N 101 EKJ C24 S23 sing Y N 102 EKJ C25 C26 sing Y N 103 EKJ C26 C27 doub Y N 104 EKJ C27 C28 sing Y N 105 EKJ C28 C29 doub Y N 106 EKJ C29 N09 sing Y N 107 EKJ C11 H111 sing N N 108 EKJ C11 H1 sing N N 109 EKJ C01 H011 sing N N 110 EKJ C01 H012 sing N N 111 EKJ C01 H013 sing N N 112 EKJ C03 H031 sing N N 113 EKJ C03 H032 sing N N 114 EKJ C04 H042 sing N N 115 EKJ C04 H041 sing N N 116 EKJ C08 H081 sing N N 117 EKJ C08 H082 sing N N 118 EKJ C13 H131 sing N N 119 EKJ C14 H141 sing N N 120 EKJ C16 H163 sing N N 121 EKJ C16 H161 sing N N 122 EKJ C16 H162 sing N N 123 EKJ C18 H181 sing N N 124 EKJ C19 H191 sing N N 125 EKJ C20 H201 sing N N 126 EKJ C21 H211 sing N N 127 EKJ C25 H251 sing N N 128 EKJ C26 H261 sing N N 129 EKJ C27 H271 sing N N 130 EKJ C28 H281 sing N N 131 EKJ N05 H051 sing N N 132 G OP3 P sing N N 133 G OP3 HOP3 sing N N 134 G P OP1 doub N N 135 G P OP2 sing N N 136 G P "O5'" sing N N 137 G OP2 HOP2 sing N N 138 G "O5'" "C5'" sing N N 139 G "C5'" "C4'" sing N N 140 G "C5'" "H5'" sing N N 141 G "C5'" "H5''" sing N N 142 G "C4'" "O4'" sing N N 143 G "C4'" "C3'" sing N N 144 G "C4'" "H4'" sing N N 145 G "O4'" "C1'" sing N N 146 G "C3'" "O3'" sing N N 147 G "C3'" "C2'" sing N N 148 G "C3'" "H3'" sing N N 149 G "O3'" "HO3'" sing N N 150 G "C2'" "O2'" sing N N 151 G "C2'" "C1'" sing N N 152 G "C2'" "H2'" sing N N 153 G "O2'" "HO2'" sing N N 154 G "C1'" N9 sing N N 155 G "C1'" "H1'" sing N N 156 G N9 C8 sing Y N 157 G N9 C4 sing Y N 158 G C8 N7 doub Y N 159 G C8 H8 sing N N 160 G N7 C5 sing Y N 161 G C5 C6 sing N N 162 G C5 C4 doub Y N 163 G C6 O6 doub N N 164 G C6 N1 sing N N 165 G N1 C2 sing N N 166 G N1 H1 sing N N 167 G C2 N2 sing N N 168 G C2 N3 doub N N 169 G N2 H21 sing N N 170 G N2 H22 sing N N 171 G N3 C4 sing N N 172 HOH O H1 sing N N 173 HOH O H2 sing N N 174 SPM N1 C2 sing N N 175 SPM N1 HN11 sing N N 176 SPM N1 HN12 sing N N 177 SPM C2 C3 sing N N 178 SPM C2 H21 sing N N 179 SPM C2 H22 sing N N 180 SPM C3 C4 sing N N 181 SPM C3 H31 sing N N 182 SPM C3 H32 sing N N 183 SPM C4 N5 sing N N 184 SPM C4 H41 sing N N 185 SPM C4 H42 sing N N 186 SPM N5 C6 sing N N 187 SPM N5 HN5 sing N N 188 SPM C6 C7 sing N N 189 SPM C6 H61 sing N N 190 SPM C6 H62 sing N N 191 SPM C7 C8 sing N N 192 SPM C7 H71 sing N N 193 SPM C7 H72 sing N N 194 SPM C8 C9 sing N N 195 SPM C8 H81 sing N N 196 SPM C8 H82 sing N N 197 SPM C9 N10 sing N N 198 SPM C9 H91 sing N N 199 SPM C9 H92 sing N N 200 SPM N10 C11 sing N N 201 SPM N10 HN0 sing N N 202 SPM C11 C12 sing N N 203 SPM C11 H111 sing N N 204 SPM C11 H112 sing N N 205 SPM C12 C13 sing N N 206 SPM C12 H121 sing N N 207 SPM C12 H122 sing N N 208 SPM C13 N14 sing N N 209 SPM C13 H131 sing N N 210 SPM C13 H132 sing N N 211 SPM N14 HN41 sing N N 212 SPM N14 HN42 sing N N 213 U OP3 P sing N N 214 U OP3 HOP3 sing N N 215 U P OP1 doub N N 216 U P OP2 sing N N 217 U P "O5'" sing N N 218 U OP2 HOP2 sing N N 219 U "O5'" "C5'" sing N N 220 U "C5'" "C4'" sing N N 221 U "C5'" "H5'" sing N N 222 U "C5'" "H5''" sing N N 223 U "C4'" "O4'" sing N N 224 U "C4'" "C3'" sing N N 225 U "C4'" "H4'" sing N N 226 U "O4'" "C1'" sing N N 227 U "C3'" "O3'" sing N N 228 U "C3'" "C2'" sing N N 229 U "C3'" "H3'" sing N N 230 U "O3'" "HO3'" sing N N 231 U "C2'" "O2'" sing N N 232 U "C2'" "C1'" sing N N 233 U "C2'" "H2'" sing N N 234 U "O2'" "HO2'" sing N N 235 U "C1'" N1 sing N N 236 U "C1'" "H1'" sing N N 237 U N1 C2 sing N N 238 U N1 C6 sing N N 239 U C2 O2 doub N N 240 U C2 N3 sing N N 241 U N3 C4 sing N N 242 U N3 H3 sing N N 243 U C4 O4 doub N N 244 U C4 C5 sing N N 245 U C5 C6 doub N N 246 U C5 H5 sing N N 247 U C6 H6 sing N N 248 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6E8S 'double helix' 6E8S 'a-form double helix' 6E8S 'parallel strands' 6E8S 'bulge loop' 6E8S 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 38 1_555 -0.185 -0.246 0.354 -4.065 -6.174 -2.626 1 A_G1:C38_A A 1 ? A 38 ? 19 1 1 A C 2 1_555 A G 37 1_555 0.051 -0.205 0.103 3.064 -12.883 0.526 2 A_C2:G37_A A 2 ? A 37 ? 19 1 1 A U 3 1_555 A A 36 1_555 -0.229 -0.385 0.567 -0.188 -6.778 2.816 3 A_U3:A36_A A 3 ? A 36 ? 20 1 1 A A 4 1_555 A U 35 1_555 0.077 -0.014 0.304 2.212 -15.339 5.442 4 A_A4:U35_A A 4 ? A 35 ? 20 1 1 A C 5 1_555 A G 34 1_555 0.297 -0.283 0.162 7.669 -16.967 2.140 5 A_C5:G34_A A 5 ? A 34 ? 19 1 1 A G 6 1_555 A C 33 1_555 0.095 -0.160 0.015 -5.940 -15.289 0.360 6 A_G6:C33_A A 6 ? A 33 ? 19 1 1 A A 7 1_555 A U 32 1_555 0.223 0.065 0.358 -3.426 -18.534 -5.693 7 A_A7:U32_A A 7 ? A 32 ? 20 1 1 A A 8 1_555 A U 31 1_555 0.093 -0.015 0.716 9.002 -15.575 -4.837 8 A_A8:U31_A A 8 ? A 31 ? 20 1 1 A U 24 1_555 A A 12 1_555 0.953 3.181 0.454 7.927 14.352 -120.688 9 A_U24:A12_A A 24 ? A 12 ? ? ? 1 A G 9 1_555 A G 25 1_555 -1.797 -3.161 -1.318 31.452 -1.817 89.329 10 A_G9:G25_A A 9 ? A 25 ? 6 3 1 A G 10 1_555 A G 23 1_555 -1.794 -3.106 -0.531 0.618 -9.318 89.974 11 A_G10:G23_A A 10 ? A 23 ? 6 3 1 A G 19 1_555 A G 14 1_555 -1.598 -3.135 0.012 2.581 10.082 93.291 12 A_G19:G14_A A 19 ? A 14 ? 6 3 1 A G 13 1_555 A G 18 1_555 2.173 2.972 -0.037 -3.355 6.158 -87.458 13 A_G13:G18_A A 13 ? A 18 ? 6 3 1 A U 20 1_555 A U 27 1_555 2.247 3.377 0.014 12.541 4.367 177.053 14 A_U20:U27_A A 20 ? A 27 ? 13 2 1 A A 21 1_555 A A 28 1_555 -5.636 5.243 0.016 -2.971 2.384 -175.045 15 A_A21:A28_A A 21 ? A 28 ? 2 8 1 A G 26 1_555 A U 29 1_555 3.755 3.349 0.096 -13.946 5.905 -78.060 16 A_G26:U29_A A 26 ? A 29 ? ? 1 1 B G 1 1_555 B C 38 1_555 -0.285 -0.204 0.188 -3.332 -6.575 -3.475 17 B_G1:C38_B B 1 ? B 38 ? 19 1 1 B C 2 1_555 B G 37 1_555 0.079 -0.156 0.354 -3.439 -7.543 -1.243 18 B_C2:G37_B B 2 ? B 37 ? 19 1 1 B U 3 1_555 B A 36 1_555 -0.376 0.016 0.512 -3.079 -9.559 3.606 19 B_U3:A36_B B 3 ? B 36 ? 20 1 1 B A 4 1_555 B U 35 1_555 0.022 -0.171 0.344 9.758 -13.141 4.318 20 B_A4:U35_B B 4 ? B 35 ? 20 1 1 B C 5 1_555 B G 34 1_555 0.108 -0.198 0.043 3.970 -18.926 -0.048 21 B_C5:G34_B B 5 ? B 34 ? 19 1 1 B G 6 1_555 B C 33 1_555 -0.233 -0.255 0.026 -5.210 -15.863 4.244 22 B_G6:C33_B B 6 ? B 33 ? 19 1 1 B A 7 1_555 B U 32 1_555 0.234 -0.049 0.292 -4.415 -13.335 -2.242 23 B_A7:U32_B B 7 ? B 32 ? 20 1 1 B A 8 1_555 B U 31 1_555 0.199 -0.139 0.769 11.150 -17.390 -2.550 24 B_A8:U31_B B 8 ? B 31 ? 20 1 1 B U 24 1_555 B A 12 1_555 1.236 3.100 0.457 8.673 12.394 -117.888 25 B_U24:A12_B B 24 ? B 12 ? ? ? 1 B G 9 1_555 B G 25 1_555 -1.641 -3.284 -1.241 30.956 0.426 88.925 26 B_G9:G25_B B 9 ? B 25 ? 6 3 1 B G 10 1_555 B G 23 1_555 -1.739 -3.274 -0.346 2.179 -12.699 89.612 27 B_G10:G23_B B 10 ? B 23 ? 6 3 1 B G 19 1_555 B G 14 1_555 -1.633 -3.269 -0.060 3.160 9.618 89.484 28 B_G19:G14_B B 19 ? B 14 ? 6 3 1 B G 13 1_555 B G 18 1_555 1.930 3.252 0.236 -5.489 7.061 -87.799 29 B_G13:G18_B B 13 ? B 18 ? 6 3 1 B U 20 1_555 B U 27 1_555 2.339 3.577 0.148 16.928 4.066 175.531 30 B_U20:U27_B B 20 ? B 27 ? 13 2 1 B A 21 1_555 B A 28 1_555 -5.892 5.397 0.114 -5.014 5.050 -174.368 31 B_A21:A28_B B 21 ? B 28 ? 2 8 1 B G 26 1_555 B U 29 1_555 3.887 3.474 0.010 -4.875 8.214 -77.836 32 B_G26:U29_B B 26 ? B 29 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 38 1_555 A C 2 1_555 A G 37 1_555 -0.153 -1.746 3.129 2.277 0.048 32.978 -3.076 0.637 3.109 0.085 -4.005 33.054 1 AA_G1C2:G37C38_AA A 1 ? A 38 ? A 2 ? A 37 ? 1 A C 2 1_555 A G 37 1_555 A U 3 1_555 A A 36 1_555 0.139 -1.694 3.302 -5.082 5.944 30.303 -4.220 -1.179 2.866 11.139 9.524 31.273 2 AA_C2U3:A36G37_AA A 2 ? A 37 ? A 3 ? A 36 ? 1 A U 3 1_555 A A 36 1_555 A A 4 1_555 A U 35 1_555 -0.220 -1.317 2.897 1.552 8.918 34.173 -3.273 0.554 2.474 14.856 -2.586 35.317 3 AA_U3A4:U35A36_AA A 3 ? A 36 ? A 4 ? A 35 ? 1 A A 4 1_555 A U 35 1_555 A C 5 1_555 A G 34 1_555 -0.207 -1.287 3.097 -0.875 5.407 32.353 -3.131 0.229 2.855 9.618 1.556 32.801 4 AA_A4C5:G34U35_AA A 4 ? A 35 ? A 5 ? A 34 ? 1 A C 5 1_555 A G 34 1_555 A G 6 1_555 A C 33 1_555 -0.168 -1.725 3.444 1.073 14.358 32.017 -4.910 0.432 2.462 24.540 -1.834 35.028 5 AA_C5G6:C33G34_AA A 5 ? A 34 ? A 6 ? A 33 ? 1 A G 6 1_555 A C 33 1_555 A A 7 1_555 A U 32 1_555 -0.435 -1.513 3.081 -2.154 7.095 31.939 -3.779 0.438 2.714 12.681 3.851 32.766 6 AA_G6A7:U32C33_AA A 6 ? A 33 ? A 7 ? A 32 ? 1 A A 7 1_555 A U 32 1_555 A A 8 1_555 A U 31 1_555 0.167 -1.076 2.864 0.882 3.073 33.555 -2.286 -0.165 2.760 5.308 -1.524 33.703 7 AA_A7A8:U31U32_AA A 7 ? A 32 ? A 8 ? A 31 ? 1 A A 8 1_555 A U 31 1_555 A U 24 1_555 A A 12 1_555 -2.189 1.703 -4.004 90.229 117.682 136.519 1.427 0.662 -3.732 59.695 -45.770 168.384 8 AA_A8U24:A12U31_AA A 8 ? A 31 ? A 24 ? A 12 ? 1 A U 24 1_555 A A 12 1_555 A G 9 1_555 A G 25 1_555 -3.382 1.469 2.045 -10.957 -164.659 -128.984 -0.239 -1.727 2.379 83.051 -5.527 -173.565 9 AA_U24G9:G25A12_AA A 24 ? A 12 ? A 9 ? A 25 ? 1 A G 9 1_555 A G 25 1_555 A G 10 1_555 A G 23 1_555 -0.977 -1.143 2.903 5.684 -1.853 30.047 -1.845 2.828 2.740 -3.529 -10.828 30.623 10 AA_G9G10:G23G25_AA A 9 ? A 25 ? A 10 ? A 23 ? 1 A G 10 1_555 A G 23 1_555 A G 19 1_555 A G 14 1_555 -1.903 -3.262 -0.508 -11.878 11.345 179.264 -1.631 0.952 -0.508 5.673 5.939 179.271 11 AA_G10G19:G14G23_AA A 10 ? A 23 ? A 19 ? A 14 ? 1 A G 19 1_555 A G 14 1_555 A G 13 1_555 A G 18 1_555 0.714 0.325 -2.724 -11.140 -7.463 -27.045 -1.815 3.152 -2.113 14.854 -22.174 -30.131 12 AA_G19G13:G18G14_AA A 19 ? A 14 ? A 13 ? A 18 ? 1 A U 20 1_555 A U 27 1_555 A A 21 1_555 A A 28 1_555 -1.041 -1.041 3.507 -12.227 -6.623 -169.302 0.532 -0.540 3.491 3.326 -6.140 -169.381 13 AA_U20A21:A28U27_AA A 20 ? A 27 ? A 21 ? A 28 ? 1 A A 21 1_555 A A 28 1_555 A G 26 1_555 A U 29 1_555 1.915 -1.482 3.232 4.020 4.356 83.417 -1.215 -1.341 3.239 3.270 -3.018 83.589 14 AA_A21G26:U29A28_AA A 21 ? A 28 ? A 26 ? A 29 ? 1 B G 1 1_555 B C 38 1_555 B C 2 1_555 B G 37 1_555 -0.099 -1.918 3.272 -1.163 2.512 34.235 -3.633 -0.010 3.129 4.258 1.972 34.343 15 BB_G1C2:G37C38_BB B 1 ? B 38 ? B 2 ? B 37 ? 1 B C 2 1_555 B G 37 1_555 B U 3 1_555 B A 36 1_555 -0.155 -1.799 3.145 -3.258 5.429 25.887 -5.198 -0.439 2.716 11.894 7.138 26.637 16 BB_C2U3:A36G37_BB B 2 ? B 37 ? B 3 ? B 36 ? 1 B U 3 1_555 B A 36 1_555 B A 4 1_555 B U 35 1_555 -0.418 -1.331 2.717 -1.937 6.657 34.228 -3.023 0.464 2.442 11.169 3.250 34.903 17 BB_U3A4:U35A36_BB B 3 ? B 36 ? B 4 ? B 35 ? 1 B A 4 1_555 B U 35 1_555 B C 5 1_555 B G 34 1_555 -0.208 -1.422 3.369 1.623 10.622 31.217 -4.241 0.631 2.738 19.045 -2.909 32.971 18 BB_A4C5:G34U35_BB B 4 ? B 35 ? B 5 ? B 34 ? 1 B C 5 1_555 B G 34 1_555 B G 6 1_555 B C 33 1_555 0.030 -1.625 3.293 -0.572 12.824 31.810 -4.611 -0.133 2.472 22.296 0.995 34.240 19 BB_C5G6:C33G34_BB B 5 ? B 34 ? B 6 ? B 33 ? 1 B G 6 1_555 B C 33 1_555 B A 7 1_555 B U 32 1_555 -0.475 -1.363 3.136 -2.603 8.573 34.008 -3.430 0.431 2.750 14.350 4.356 35.135 20 BB_G6A7:U32C33_BB B 6 ? B 33 ? B 7 ? B 32 ? 1 B A 7 1_555 B U 32 1_555 B A 8 1_555 B U 31 1_555 0.097 -0.911 2.838 0.760 1.082 31.772 -1.834 -0.057 2.807 1.975 -1.388 31.798 21 BB_A7A8:U31U32_BB B 7 ? B 32 ? B 8 ? B 31 ? 1 B A 8 1_555 B U 31 1_555 B U 24 1_555 B A 12 1_555 -2.075 1.896 -4.046 90.428 117.418 142.600 1.445 0.661 -3.774 59.343 -45.702 169.923 22 BB_A8U24:A12U31_BB B 8 ? B 31 ? B 24 ? B 12 ? 1 B U 24 1_555 B A 12 1_555 B G 9 1_555 B G 25 1_555 -3.424 1.186 2.143 -10.978 -164.989 -148.905 -0.291 -1.733 2.320 82.759 -5.507 -176.084 23 BB_U24G9:G25A12_BB B 24 ? B 12 ? B 9 ? B 25 ? 1 B G 9 1_555 B G 25 1_555 B G 10 1_555 B G 23 1_555 -0.846 -1.128 2.960 8.157 -0.982 30.634 -1.907 2.870 2.686 -1.818 -15.101 31.691 24 BB_G9G10:G23G25_BB B 9 ? B 25 ? B 10 ? B 23 ? 1 B G 10 1_555 B G 23 1_555 B G 19 1_555 B G 14 1_555 -1.717 -3.343 -0.470 -10.981 11.525 179.346 -1.671 0.858 -0.471 5.763 5.491 179.353 25 BB_G10G19:G14G23_BB B 10 ? B 23 ? B 19 ? B 14 ? 1 B G 19 1_555 B G 14 1_555 B G 13 1_555 B G 18 1_555 0.653 0.461 -2.718 -9.295 -5.916 -27.588 -1.880 2.816 -2.241 11.825 -18.579 -29.667 26 BB_G19G13:G18G14_BB B 19 ? B 14 ? B 13 ? B 18 ? 1 B U 20 1_555 B U 27 1_555 B A 21 1_555 B A 28 1_555 -1.045 -0.968 3.602 -13.444 -4.809 -172.372 0.490 -0.538 3.591 2.410 -6.737 -172.431 27 BB_U20A21:A28U27_BB B 20 ? B 27 ? B 21 ? B 28 ? 1 B A 21 1_555 B A 28 1_555 B G 26 1_555 B U 29 1_555 2.080 -1.649 3.222 1.472 1.802 84.539 -1.267 -1.512 3.222 1.340 -1.094 84.565 28 BB_A21G26:U29A28_BB B 21 ? B 28 ? B 26 ? B 29 ? # _atom_sites.entry_id 6E8S _atom_sites.fract_transf_matrix[1][1] 0.015865 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014796 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013043 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H K MG N NA O P S # loop_