data_6E8U # _entry.id 6E8U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6E8U pdb_00006e8u 10.2210/pdb6e8u/pdb WWPDB D_1000235919 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6E8U _pdbx_database_status.recvd_initial_deposition_date 2018-07-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Trachman, R.J.' 1 0000-0001-7459-2457 ;Ferre-D'Amare, A.R. ; 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Chem. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first 472 _citation.page_last 479 _citation.title 'Structure and functional reselection of the Mango-III fluorogenic RNA aptamer.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-019-0267-9 _citation.pdbx_database_id_PubMed 30992561 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Trachman 3rd., R.J.' 1 ? primary 'Autour, A.' 2 ? primary 'Jeng, S.C.Y.' 3 ? primary 'Abdolahzadeh, A.' 4 ? primary 'Andreoni, A.' 5 0000-0003-4415-2770 primary 'Cojocaru, R.' 6 ? primary 'Garipov, R.' 7 ? primary 'Dolgosheina, E.V.' 8 ? primary 'Knutson, J.R.' 9 ? primary 'Ryckelynck, M.' 10 0000-0002-2225-3733 primary 'Unrau, P.J.' 11 ? primary ;Ferre-D'Amare, A.R. ; 12 0000-0003-4549-1619 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6E8U _cell.details ? _cell.formula_units_Z ? _cell.length_a 53.270 _cell.length_a_esd ? _cell.length_b 53.270 _cell.length_b_esd ? _cell.length_c 188.036 _cell.length_c_esd ? _cell.volume 533588.422 _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E8U _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (37-MER)' 12050.145 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 3 non-polymer syn ;4-[(3-{2,16-dioxo-20-[(3aR,4R,6aS)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-6,9,12-trioxa-3,15-diazaicosan-1-yl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium ; 750.970 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 6 water nat water 18.015 143 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Mango-III (A10U) aptamer' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GUACGAAGGAAGGUUUGGUAUGGGGUAGUUGUCGUAC _entity_poly.pdbx_seq_one_letter_code_can GUACGAAGGAAGGUUUGGUAUGGGGUAGUUGUCGUAC _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 A n 1 4 C n 1 5 G n 1 6 A n 1 7 A n 1 8 G n 1 9 G n 1 10 A n 1 11 A n 1 12 G n 1 13 G n 1 14 U n 1 15 U n 1 16 U n 1 17 G n 1 18 G n 1 19 U n 1 20 A n 1 21 U n 1 22 G n 1 23 G n 1 24 G n 1 25 G n 1 26 U n 1 27 A n 1 28 G n 1 29 U n 1 30 U n 1 31 G n 1 32 U n 1 33 C n 1 34 G n 1 35 U n 1 36 A n 1 37 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 37 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details synthetic # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6E8U _struct_ref.pdbx_db_accession 6E8U _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6E8U _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 37 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6E8U _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 37 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 37 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 HZD non-polymer . ;4-[(3-{2,16-dioxo-20-[(3aR,4R,6aS)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-6,9,12-trioxa-3,15-diazaicosan-1-yl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium ; ? 'C38 H50 N6 O6 S2 2' 750.970 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6E8U _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.77 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 55.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.1 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M NaCacodylate pH 7.1, PEG3350 16%, 0.25 M Magnesium Acetate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-03-17 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 23.95 _reflns.entry_id 6E8U _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.51 _reflns.d_resolution_low 40.59 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 20010 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.2 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.51 _reflns_shell.d_res_low 1.61 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1951 _reflns_shell.percent_possible_all 98.6 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.0 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 10.6 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 32.67 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6E8U _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.55 _refine.ls_d_res_low 40.59 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 20010 _refine.ls_number_reflns_R_free 1856 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.65 _refine.ls_percent_reflns_R_free 9.28 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1794 _refine.ls_R_factor_R_free 0.2064 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1767 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6E8S _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.8003 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1540 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 788 _refine_hist.pdbx_number_atoms_ligand 60 _refine_hist.number_atoms_solvent 143 _refine_hist.number_atoms_total 991 _refine_hist.d_res_high 1.55 _refine_hist.d_res_low 40.59 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0053 ? 967 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.1228 ? 1499 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0473 ? 190 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0111 ? 42 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 22.0348 ? 470 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.55 1.59 . . 137 1348 97.31 . . . 0.2999 . 0.2515 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.59 1.64 . . 140 1364 97.73 . . . 0.2176 . 0.2208 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.64 1.69 . . 137 1337 97.88 . . . 0.2406 . 0.2168 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.69 1.75 . . 140 1372 98.05 . . . 0.2391 . 0.2073 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.75 1.82 . . 139 1354 98.16 . . . 0.2201 . 0.1944 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.82 1.91 . . 141 1383 98.58 . . . 0.2398 . 0.1919 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.91 2.01 . . 141 1381 98.77 . . . 0.2044 . 0.1993 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.01 2.13 . . 143 1399 98.91 . . . 0.2267 . 0.1985 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.13 2.30 . . 143 1395 99.10 . . . 0.2802 . 0.2046 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.30 2.53 . . 144 1407 99.30 . . . 0.2497 . 0.2130 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.53 2.89 . . 145 1421 99.55 . . . 0.2160 . 0.2106 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.89 3.64 . . 148 1445 99.62 . . . 0.2059 . 0.1532 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.64 40.60 . . 158 1548 99.30 . . . 0.1589 . 0.1446 . . . . . . . . . . # _struct.entry_id 6E8U _struct.title 'Structure of the Mango-III (A10U) aptamer bound to TO1-Biotin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6E8U _struct_keywords.text 'Aptamer, fluorescence, RNA, G-quadruplex' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 5 ? K N N 6 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 8 O6 ? ? ? 1_555 J K . K ? ? B G 8 B K 109 1_555 ? ? ? ? ? ? ? 2.802 ? ? metalc2 metalc ? ? A G 9 O6 ? ? ? 1_555 J K . K ? ? B G 9 B K 109 1_555 ? ? ? ? ? ? ? 2.774 ? ? metalc3 metalc ? ? A G 12 O6 ? ? ? 1_555 J K . K ? ? B G 12 B K 109 1_555 ? ? ? ? ? ? ? 2.731 ? ? metalc4 metalc ? ? A G 13 O6 ? ? ? 1_555 J K . K ? ? B G 13 B K 109 1_555 ? ? ? ? ? ? ? 2.802 ? ? metalc5 metalc ? ? A U 14 OP1 ? ? ? 1_555 H NA . NA ? ? B U 14 B NA 107 1_555 ? ? ? ? ? ? ? 2.209 ? ? metalc6 metalc ? ? A U 15 OP1 ? ? ? 1_555 H NA . NA ? ? B U 15 B NA 107 1_555 ? ? ? ? ? ? ? 2.206 ? ? metalc7 metalc ? ? A G 17 O6 ? ? ? 1_555 J K . K ? ? B G 17 B K 109 1_555 ? ? ? ? ? ? ? 2.747 ? ? metalc8 metalc ? ? A G 18 O6 ? ? ? 1_555 J K . K ? ? B G 18 B K 109 1_555 ? ? ? ? ? ? ? 2.709 ? ? metalc9 metalc ? ? A U 19 OP1 ? ? ? 1_555 F MG . MG ? ? B U 19 B MG 105 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc10 metalc ? ? A U 19 OP1 ? ? ? 1_555 F MG . MG ? ? B U 19 B MG 105 10_555 ? ? ? ? ? ? ? 2.034 ? ? metalc11 metalc ? ? A G 22 O6 ? ? ? 1_555 J K . K ? ? B G 22 B K 109 1_555 ? ? ? ? ? ? ? 2.742 ? ? metalc12 metalc ? ? A G 24 O6 ? ? ? 1_555 J K . K ? ? B G 24 B K 109 1_555 ? ? ? ? ? ? ? 2.757 ? ? metalc13 metalc ? ? A G 25 OP1 ? ? ? 1_555 B MG . MG ? ? B G 25 B MG 101 1_555 ? ? ? ? ? ? ? 2.211 ? ? metalc14 metalc ? ? A G 28 OP2 ? ? ? 1_555 C MG . MG ? ? B G 28 B MG 102 1_555 ? ? ? ? ? ? ? 2.026 ? ? metalc15 metalc ? ? A U 29 O4 ? ? ? 1_555 C MG . MG ? ? B U 29 B MG 102 1_555 ? ? ? ? ? ? ? 2.203 ? ? metalc16 metalc ? ? B MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 101 B HOH 223 1_555 ? ? ? ? ? ? ? 2.211 ? ? metalc17 metalc ? ? B MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 101 B HOH 227 1_555 ? ? ? ? ? ? ? 1.874 ? ? metalc18 metalc ? ? B MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 101 B HOH 267 1_555 ? ? ? ? ? ? ? 2.032 ? ? metalc19 metalc ? ? B MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 101 B HOH 292 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc20 metalc ? ? B MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 101 B HOH 307 1_555 ? ? ? ? ? ? ? 1.992 ? ? metalc21 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 102 B HOH 275 1_555 ? ? ? ? ? ? ? 2.002 ? ? metalc22 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 102 B HOH 293 1_555 ? ? ? ? ? ? ? 2.170 ? ? metalc23 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 102 B HOH 294 1_555 ? ? ? ? ? ? ? 2.039 ? ? metalc24 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 102 B HOH 312 1_555 ? ? ? ? ? ? ? 2.107 ? ? metalc25 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 103 B HOH 211 1_555 ? ? ? ? ? ? ? 2.049 ? ? metalc26 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 103 B HOH 226 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc27 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 103 B HOH 250 1_555 ? ? ? ? ? ? ? 2.025 ? ? metalc28 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 103 B HOH 272 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc29 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 103 B HOH 299 1_555 ? ? ? ? ? ? ? 2.129 ? ? metalc30 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 103 B HOH 327 1_555 ? ? ? ? ? ? ? 2.020 ? ? metalc31 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 104 B HOH 210 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc32 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 104 B HOH 232 1_555 ? ? ? ? ? ? ? 2.117 ? ? metalc33 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 104 B HOH 258 1_555 ? ? ? ? ? ? ? 2.113 ? ? metalc34 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 104 B HOH 274 1_555 ? ? ? ? ? ? ? 2.231 ? ? metalc35 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 104 B HOH 339 1_555 ? ? ? ? ? ? ? 2.071 ? ? metalc36 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 104 B HOH 342 1_555 ? ? ? ? ? ? ? 2.208 ? ? metalc37 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 105 B HOH 249 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc38 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 105 B HOH 249 10_555 ? ? ? ? ? ? ? 2.058 ? ? metalc39 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 105 B HOH 260 1_555 ? ? ? ? ? ? ? 2.137 ? ? metalc40 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 105 B HOH 260 10_555 ? ? ? ? ? ? ? 2.137 ? ? metalc41 metalc ? ? H NA . NA ? ? ? 1_555 K HOH . O ? ? B NA 107 B HOH 276 1_555 ? ? ? ? ? ? ? 2.550 ? ? metalc42 metalc ? ? H NA . NA ? ? ? 1_555 K HOH . O ? ? B NA 107 B HOH 303 1_555 ? ? ? ? ? ? ? 2.217 ? ? metalc43 metalc ? ? H NA . NA ? ? ? 1_555 K HOH . O ? ? B NA 107 B HOH 314 1_555 ? ? ? ? ? ? ? 2.225 ? ? metalc44 metalc ? ? H NA . NA ? ? ? 1_555 K HOH . O ? ? B NA 107 B HOH 315 1_555 ? ? ? ? ? ? ? 2.189 ? ? metalc45 metalc ? ? I NA . NA ? ? ? 1_555 K HOH . O ? ? B NA 108 B HOH 218 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc46 metalc ? ? I NA . NA ? ? ? 1_555 K HOH . O ? ? B NA 108 B HOH 236 1_555 ? ? ? ? ? ? ? 2.391 ? ? metalc47 metalc ? ? I NA . NA ? ? ? 1_555 K HOH . O ? ? B NA 108 B HOH 320 1_555 ? ? ? ? ? ? ? 2.316 ? ? metalc48 metalc ? ? I NA . NA ? ? ? 1_555 K HOH . O ? ? B NA 108 B HOH 325 1_555 ? ? ? ? ? ? ? 2.333 ? ? metalc49 metalc ? ? I NA . NA ? ? ? 1_555 K HOH . O ? ? B NA 108 B HOH 341 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc50 metalc ? ? I NA . NA ? ? ? 1_555 K HOH . O ? ? B NA 108 B HOH 343 1_555 ? ? ? ? ? ? ? 2.404 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 37 N3 ? ? B G 1 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 37 O2 ? ? B G 1 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 37 N4 ? ? B G 1 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 36 N1 ? ? B U 2 B A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 36 N6 ? ? B U 2 B A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 35 N3 ? ? B A 3 B U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 35 O4 ? ? B A 3 B U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 34 N1 ? ? B C 4 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 34 O6 ? ? B C 4 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 34 N2 ? ? B C 4 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N1 A ? ? 1_555 A C 33 N3 ? ? B G 5 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 B ? ? 1_555 A C 33 N3 ? ? B G 5 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 A ? ? 1_555 A C 33 O2 ? ? B G 5 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 N2 B ? ? 1_555 A C 33 O2 ? ? B G 5 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 5 O6 A ? ? 1_555 A C 33 N4 ? ? B G 5 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 5 O6 B ? ? 1_555 A C 33 N4 ? ? B G 5 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 32 N3 ? ? B A 6 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 32 O4 ? ? B A 6 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 7 N1 ? ? ? 1_555 A G 31 N1 ? ? B A 7 B G 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog20 hydrog ? ? A A 7 N6 ? ? ? 1_555 A G 31 O6 ? ? B A 7 B G 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog21 hydrog ? ? A G 8 N1 ? ? ? 1_555 A G 12 O6 ? ? B G 8 B G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A G 8 N2 ? ? ? 1_555 A G 12 N7 ? ? B G 8 B G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A G 8 N7 ? ? ? 1_555 A G 24 N2 ? ? B G 8 B G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A G 8 O6 ? ? ? 1_555 A G 24 N1 ? ? B G 8 B G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A G 9 N1 ? ? ? 1_555 A G 13 O6 ? ? B G 9 B G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A G 9 N2 ? ? ? 1_555 A G 13 N7 ? ? B G 9 B G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A G 9 N7 ? ? ? 1_555 A G 22 N2 ? ? B G 9 B G 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A G 9 O6 ? ? ? 1_555 A G 22 N1 ? ? B G 9 B G 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A A 11 N6 ? ? ? 1_555 A G 23 O6 ? ? B A 11 B G 23 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog30 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 30 N3 ? ? B A 11 B U 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 30 O4 ? ? B A 11 B U 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 12 N1 ? ? ? 1_555 A G 17 O6 ? ? B G 12 B G 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? A G 12 N2 ? ? ? 1_555 A G 17 N7 ? ? B G 12 B G 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? A G 13 N1 ? ? ? 1_555 A G 18 O6 ? ? B G 13 B G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? A G 13 N2 ? ? ? 1_555 A G 18 N7 ? ? B G 13 B G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? A U 14 N3 ? ? ? 1_555 A U 21 O4 ? ? B U 14 B U 21 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog37 hydrog ? ? A U 14 O4 ? ? ? 1_555 A U 21 N3 ? ? B U 14 B U 21 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog38 hydrog ? ? A G 17 N1 ? ? ? 1_555 A G 24 O6 ? ? B G 17 B G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? A G 17 N2 ? ? ? 1_555 A G 24 N7 ? ? B G 17 B G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? A G 17 N2 ? ? ? 1_555 A U 29 O2 ? ? B G 17 B U 29 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog41 hydrog ? ? A G 18 N1 ? ? ? 1_555 A G 22 O6 ? ? B G 18 B G 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog42 hydrog ? ? A G 18 N2 ? ? ? 1_555 A G 22 N7 ? ? B G 18 B G 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog43 hydrog ? ? A G 18 N1 ? ? ? 1_555 A G 24 O6 ? ? B G 18 B G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog44 hydrog ? ? A G 18 N2 ? ? ? 1_555 A G 24 N7 ? ? B G 18 B G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog45 hydrog ? ? A A 20 N6 ? ? ? 1_555 A A 27 N7 ? ? B A 20 B A 27 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog46 hydrog ? ? A A 20 N7 ? ? ? 1_555 A A 27 N6 ? ? B A 20 B A 27 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog47 hydrog ? ? A G 23 N1 ? ? ? 1_555 A U 30 O4 ? ? B G 23 B U 30 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog48 hydrog ? ? A G 25 N1 ? ? ? 1_555 A G 28 O6 ? ? B G 25 B G 28 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 101 ? 6 'binding site for residue MG B 101' AC2 Software B MG 102 ? 6 'binding site for residue MG B 102' AC3 Software B MG 103 ? 6 'binding site for residue MG B 103' AC4 Software B MG 104 ? 6 'binding site for residue MG B 104' AC5 Software B MG 105 ? 6 'binding site for residue MG B 105' AC6 Software B HZD 106 ? 19 'binding site for residue HZD B 106' AC7 Software B NA 107 ? 6 'binding site for residue NA B 107' AC8 Software B NA 108 ? 6 'binding site for residue NA B 108' AC9 Software B K 109 ? 8 'binding site for residue K B 109' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 G A 25 ? G B 25 . ? 1_555 ? 2 AC1 6 HOH K . ? HOH B 223 . ? 1_555 ? 3 AC1 6 HOH K . ? HOH B 227 . ? 1_555 ? 4 AC1 6 HOH K . ? HOH B 267 . ? 1_555 ? 5 AC1 6 HOH K . ? HOH B 292 . ? 1_555 ? 6 AC1 6 HOH K . ? HOH B 307 . ? 1_555 ? 7 AC2 6 G A 28 ? G B 28 . ? 1_555 ? 8 AC2 6 U A 29 ? U B 29 . ? 1_555 ? 9 AC2 6 HOH K . ? HOH B 275 . ? 1_555 ? 10 AC2 6 HOH K . ? HOH B 293 . ? 1_555 ? 11 AC2 6 HOH K . ? HOH B 294 . ? 1_555 ? 12 AC2 6 HOH K . ? HOH B 312 . ? 1_555 ? 13 AC3 6 HOH K . ? HOH B 211 . ? 1_555 ? 14 AC3 6 HOH K . ? HOH B 226 . ? 1_555 ? 15 AC3 6 HOH K . ? HOH B 250 . ? 1_555 ? 16 AC3 6 HOH K . ? HOH B 272 . ? 1_555 ? 17 AC3 6 HOH K . ? HOH B 299 . ? 1_555 ? 18 AC3 6 HOH K . ? HOH B 327 . ? 1_555 ? 19 AC4 6 HOH K . ? HOH B 210 . ? 1_555 ? 20 AC4 6 HOH K . ? HOH B 232 . ? 1_555 ? 21 AC4 6 HOH K . ? HOH B 258 . ? 1_555 ? 22 AC4 6 HOH K . ? HOH B 274 . ? 1_555 ? 23 AC4 6 HOH K . ? HOH B 339 . ? 1_555 ? 24 AC4 6 HOH K . ? HOH B 342 . ? 1_555 ? 25 AC5 6 U A 19 ? U B 19 . ? 10_555 ? 26 AC5 6 U A 19 ? U B 19 . ? 1_555 ? 27 AC5 6 HOH K . ? HOH B 249 . ? 10_555 ? 28 AC5 6 HOH K . ? HOH B 249 . ? 1_555 ? 29 AC5 6 HOH K . ? HOH B 260 . ? 10_555 ? 30 AC5 6 HOH K . ? HOH B 260 . ? 1_555 ? 31 AC6 19 G A 9 ? G B 9 . ? 1_555 ? 32 AC6 19 G A 13 ? G B 13 . ? 1_555 ? 33 AC6 19 U A 14 ? U B 14 . ? 1_555 ? 34 AC6 19 U A 14 ? U B 14 . ? 5_554 ? 35 AC6 19 U A 15 ? U B 15 . ? 5_554 ? 36 AC6 19 U A 16 ? U B 16 . ? 5_554 ? 37 AC6 19 U A 16 ? U B 16 . ? 1_555 ? 38 AC6 19 G A 18 ? G B 18 . ? 1_555 ? 39 AC6 19 U A 19 ? U B 19 . ? 1_555 ? 40 AC6 19 A A 20 ? A B 20 . ? 10_555 ? 41 AC6 19 U A 21 ? U B 21 . ? 1_555 ? 42 AC6 19 G A 22 ? G B 22 . ? 1_555 ? 43 AC6 19 A A 27 ? A B 27 . ? 10_555 ? 44 AC6 19 HOH K . ? HOH B 201 . ? 1_555 ? 45 AC6 19 HOH K . ? HOH B 217 . ? 5_554 ? 46 AC6 19 HOH K . ? HOH B 228 . ? 1_555 ? 47 AC6 19 HOH K . ? HOH B 241 . ? 1_555 ? 48 AC6 19 HOH K . ? HOH B 279 . ? 1_555 ? 49 AC6 19 HOH K . ? HOH B 309 . ? 1_555 ? 50 AC7 6 U A 14 ? U B 14 . ? 1_555 ? 51 AC7 6 U A 15 ? U B 15 . ? 1_555 ? 52 AC7 6 HOH K . ? HOH B 276 . ? 1_555 ? 53 AC7 6 HOH K . ? HOH B 303 . ? 1_555 ? 54 AC7 6 HOH K . ? HOH B 314 . ? 1_555 ? 55 AC7 6 HOH K . ? HOH B 315 . ? 1_555 ? 56 AC8 6 HOH K . ? HOH B 218 . ? 1_555 ? 57 AC8 6 HOH K . ? HOH B 236 . ? 1_555 ? 58 AC8 6 HOH K . ? HOH B 320 . ? 1_555 ? 59 AC8 6 HOH K . ? HOH B 325 . ? 1_555 ? 60 AC8 6 HOH K . ? HOH B 341 . ? 1_555 ? 61 AC8 6 HOH K . ? HOH B 343 . ? 1_555 ? 62 AC9 8 G A 8 ? G B 8 . ? 1_555 ? 63 AC9 8 G A 9 ? G B 9 . ? 1_555 ? 64 AC9 8 G A 12 ? G B 12 . ? 1_555 ? 65 AC9 8 G A 13 ? G B 13 . ? 1_555 ? 66 AC9 8 G A 17 ? G B 17 . ? 1_555 ? 67 AC9 8 G A 18 ? G B 18 . ? 1_555 ? 68 AC9 8 G A 22 ? G B 22 . ? 1_555 ? 69 AC9 8 G A 24 ? G B 24 . ? 1_555 ? # _atom_sites.entry_id 6E8U _atom_sites.fract_transf_matrix[1][1] 0.018772 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018772 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005318 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? 25.62398 1.50364 ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? K ? ? 8.66788 8.58341 1.68052 12.31593 0.56275 110.00227 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 9.41153 2.53737 ? 2.59044 63.03566 ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? 19.97189 1.75589 ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? 3.38349 72.32734 ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? 15.80542 1.70748 ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? 1.42069 35.72801 ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? 1.23737 29.19336 ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G B . n A 1 2 U 2 2 2 U U B . n A 1 3 A 3 3 3 A A B . n A 1 4 C 4 4 4 C C B . n A 1 5 G 5 5 5 G G B . n A 1 6 A 6 6 6 A A B . n A 1 7 A 7 7 7 A A B . n A 1 8 G 8 8 8 G G B . n A 1 9 G 9 9 9 G G B . n A 1 10 A 10 10 10 A A B . n A 1 11 A 11 11 11 A A B . n A 1 12 G 12 12 12 G G B . n A 1 13 G 13 13 13 G G B . n A 1 14 U 14 14 14 U U B . n A 1 15 U 15 15 15 U U B . n A 1 16 U 16 16 16 U U B . n A 1 17 G 17 17 17 G G B . n A 1 18 G 18 18 18 G G B . n A 1 19 U 19 19 19 U U B . n A 1 20 A 20 20 20 A A B . n A 1 21 U 21 21 21 U U B . n A 1 22 G 22 22 22 G G B . n A 1 23 G 23 23 23 G G B . n A 1 24 G 24 24 24 G G B . n A 1 25 G 25 25 25 G G B . n A 1 26 U 26 26 26 U U B . n A 1 27 A 27 27 27 A A B . n A 1 28 G 28 28 28 G G B . n A 1 29 U 29 29 29 U U B . n A 1 30 U 30 30 30 U U B . n A 1 31 G 31 31 31 G G B . n A 1 32 U 32 32 32 U U B . n A 1 33 C 33 33 33 C C B . n A 1 34 G 34 34 34 G G B . n A 1 35 U 35 35 35 U U B . n A 1 36 A 36 36 36 A A B . n A 1 37 C 37 37 37 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 1 MG MG B . C 2 MG 1 102 2 MG MG B . D 2 MG 1 103 3 MG MG B . E 2 MG 1 104 4 MG MG B . F 2 MG 1 105 5 MG MG B . G 3 HZD 1 106 1 HZD TO1 B . H 4 NA 1 107 1 NA NA B . I 4 NA 1 108 2 NA NA B . J 5 K 1 109 1 K K B . K 6 HOH 1 201 7 HOH HOH B . K 6 HOH 2 202 31 HOH HOH B . K 6 HOH 3 203 79 HOH HOH B . K 6 HOH 4 204 43 HOH HOH B . K 6 HOH 5 205 26 HOH HOH B . K 6 HOH 6 206 45 HOH HOH B . K 6 HOH 7 207 17 HOH HOH B . K 6 HOH 8 208 138 HOH HOH B . K 6 HOH 9 209 28 HOH HOH B . K 6 HOH 10 210 52 HOH HOH B . K 6 HOH 11 211 46 HOH HOH B . K 6 HOH 12 212 108 HOH HOH B . K 6 HOH 13 213 116 HOH HOH B . K 6 HOH 14 214 134 HOH HOH B . K 6 HOH 15 215 120 HOH HOH B . K 6 HOH 16 216 20 HOH HOH B . K 6 HOH 17 217 1 HOH HOH B . K 6 HOH 18 218 69 HOH HOH B . K 6 HOH 19 219 33 HOH HOH B . K 6 HOH 20 220 99 HOH HOH B . K 6 HOH 21 221 19 HOH HOH B . K 6 HOH 22 222 112 HOH HOH B . K 6 HOH 23 223 75 HOH HOH B . K 6 HOH 24 224 102 HOH HOH B . K 6 HOH 25 225 113 HOH HOH B . K 6 HOH 26 226 126 HOH HOH B . K 6 HOH 27 227 56 HOH HOH B . K 6 HOH 28 228 135 HOH HOH B . K 6 HOH 29 229 100 HOH HOH B . K 6 HOH 30 230 130 HOH HOH B . K 6 HOH 31 231 86 HOH HOH B . K 6 HOH 32 232 53 HOH HOH B . K 6 HOH 33 233 132 HOH HOH B . K 6 HOH 34 234 101 HOH HOH B . K 6 HOH 35 235 22 HOH HOH B . K 6 HOH 36 236 142 HOH HOH B . K 6 HOH 37 237 78 HOH HOH B . K 6 HOH 38 238 81 HOH HOH B . K 6 HOH 39 239 42 HOH HOH B . K 6 HOH 40 240 68 HOH HOH B . K 6 HOH 41 241 109 HOH HOH B . K 6 HOH 42 242 96 HOH HOH B . K 6 HOH 43 243 122 HOH HOH B . K 6 HOH 44 244 82 HOH HOH B . K 6 HOH 45 245 44 HOH HOH B . K 6 HOH 46 246 90 HOH HOH B . K 6 HOH 47 247 5 HOH HOH B . K 6 HOH 48 248 18 HOH HOH B . K 6 HOH 49 249 143 HOH HOH B . K 6 HOH 50 250 98 HOH HOH B . K 6 HOH 51 251 105 HOH HOH B . K 6 HOH 52 252 36 HOH HOH B . K 6 HOH 53 253 107 HOH HOH B . K 6 HOH 54 254 121 HOH HOH B . K 6 HOH 55 255 30 HOH HOH B . K 6 HOH 56 256 92 HOH HOH B . K 6 HOH 57 257 76 HOH HOH B . K 6 HOH 58 258 125 HOH HOH B . K 6 HOH 59 259 94 HOH HOH B . K 6 HOH 60 260 84 HOH HOH B . K 6 HOH 61 261 114 HOH HOH B . K 6 HOH 62 262 64 HOH HOH B . K 6 HOH 63 263 72 HOH HOH B . K 6 HOH 64 264 67 HOH HOH B . K 6 HOH 65 265 87 HOH HOH B . K 6 HOH 66 266 89 HOH HOH B . K 6 HOH 67 267 118 HOH HOH B . K 6 HOH 68 268 55 HOH HOH B . K 6 HOH 69 269 95 HOH HOH B . K 6 HOH 70 270 4 HOH HOH B . K 6 HOH 71 271 88 HOH HOH B . K 6 HOH 72 272 47 HOH HOH B . K 6 HOH 73 273 104 HOH HOH B . K 6 HOH 74 274 131 HOH HOH B . K 6 HOH 75 275 139 HOH HOH B . K 6 HOH 76 276 24 HOH HOH B . K 6 HOH 77 277 85 HOH HOH B . K 6 HOH 78 278 6 HOH HOH B . K 6 HOH 79 279 21 HOH HOH B . K 6 HOH 80 280 29 HOH HOH B . K 6 HOH 81 281 117 HOH HOH B . K 6 HOH 82 282 50 HOH HOH B . K 6 HOH 83 283 77 HOH HOH B . K 6 HOH 84 284 38 HOH HOH B . K 6 HOH 85 285 136 HOH HOH B . K 6 HOH 86 286 80 HOH HOH B . K 6 HOH 87 287 103 HOH HOH B . K 6 HOH 88 288 97 HOH HOH B . K 6 HOH 89 289 49 HOH HOH B . K 6 HOH 90 290 27 HOH HOH B . K 6 HOH 91 291 74 HOH HOH B . K 6 HOH 92 292 71 HOH HOH B . K 6 HOH 93 293 110 HOH HOH B . K 6 HOH 94 294 141 HOH HOH B . K 6 HOH 95 295 93 HOH HOH B . K 6 HOH 96 296 91 HOH HOH B . K 6 HOH 97 297 3 HOH HOH B . K 6 HOH 98 298 137 HOH HOH B . K 6 HOH 99 299 14 HOH HOH B . K 6 HOH 100 300 41 HOH HOH B . K 6 HOH 101 301 63 HOH HOH B . K 6 HOH 102 302 10 HOH HOH B . K 6 HOH 103 303 59 HOH HOH B . K 6 HOH 104 304 32 HOH HOH B . K 6 HOH 105 305 13 HOH HOH B . K 6 HOH 106 306 37 HOH HOH B . K 6 HOH 107 307 2 HOH HOH B . K 6 HOH 108 308 12 HOH HOH B . K 6 HOH 109 309 115 HOH HOH B . K 6 HOH 110 310 9 HOH HOH B . K 6 HOH 111 311 119 HOH HOH B . K 6 HOH 112 312 140 HOH HOH B . K 6 HOH 113 313 70 HOH HOH B . K 6 HOH 114 314 57 HOH HOH B . K 6 HOH 115 315 54 HOH HOH B . K 6 HOH 116 316 11 HOH HOH B . K 6 HOH 117 317 8 HOH HOH B . K 6 HOH 118 318 128 HOH HOH B . K 6 HOH 119 319 65 HOH HOH B . K 6 HOH 120 320 15 HOH HOH B . K 6 HOH 121 321 58 HOH HOH B . K 6 HOH 122 322 34 HOH HOH B . K 6 HOH 123 323 124 HOH HOH B . K 6 HOH 124 324 106 HOH HOH B . K 6 HOH 125 325 133 HOH HOH B . K 6 HOH 126 326 62 HOH HOH B . K 6 HOH 127 327 48 HOH HOH B . K 6 HOH 128 328 129 HOH HOH B . K 6 HOH 129 329 123 HOH HOH B . K 6 HOH 130 330 66 HOH HOH B . K 6 HOH 131 331 39 HOH HOH B . K 6 HOH 132 332 51 HOH HOH B . K 6 HOH 133 333 111 HOH HOH B . K 6 HOH 134 334 35 HOH HOH B . K 6 HOH 135 335 16 HOH HOH B . K 6 HOH 136 336 83 HOH HOH B . K 6 HOH 137 337 40 HOH HOH B . K 6 HOH 138 338 60 HOH HOH B . K 6 HOH 139 339 73 HOH HOH B . K 6 HOH 140 340 127 HOH HOH B . K 6 HOH 141 341 25 HOH HOH B . K 6 HOH 142 342 61 HOH HOH B . K 6 HOH 143 343 23 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B MG 105 ? F MG . 2 1 B HOH 324 ? K HOH . 3 1 B HOH 329 ? K HOH . 4 1 B HOH 340 ? K HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 8 ? B G 8 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 9 ? B G 9 ? 1_555 75.9 ? 2 O6 ? A G 8 ? B G 8 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 71.8 ? 3 O6 ? A G 9 ? B G 9 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 85.1 ? 4 O6 ? A G 8 ? B G 8 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 133.1 ? 5 O6 ? A G 9 ? B G 9 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 70.4 ? 6 O6 ? A G 12 ? B G 12 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 73.7 ? 7 O6 ? A G 8 ? B G 8 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 17 ? B G 17 ? 1_555 115.5 ? 8 O6 ? A G 9 ? B G 9 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 17 ? B G 17 ? 1_555 152.0 ? 9 O6 ? A G 12 ? B G 12 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 17 ? B G 17 ? 1_555 75.5 ? 10 O6 ? A G 13 ? B G 13 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 17 ? B G 17 ? 1_555 84.7 ? 11 O6 ? A G 8 ? B G 8 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 18 ? B G 18 ? 1_555 152.7 ? 12 O6 ? A G 9 ? B G 9 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 18 ? B G 18 ? 1_555 114.7 ? 13 O6 ? A G 12 ? B G 12 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 18 ? B G 18 ? 1_555 131.9 ? 14 O6 ? A G 13 ? B G 13 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 18 ? B G 18 ? 1_555 73.2 ? 15 O6 ? A G 17 ? B G 17 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 18 ? B G 18 ? 1_555 67.7 ? 16 O6 ? A G 8 ? B G 8 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 22 ? B G 22 ? 1_555 85.4 ? 17 O6 ? A G 9 ? B G 9 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 22 ? B G 22 ? 1_555 73.4 ? 18 O6 ? A G 12 ? B G 12 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 22 ? B G 22 ? 1_555 152.0 ? 19 O6 ? A G 13 ? B G 13 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 22 ? B G 22 ? 1_555 113.9 ? 20 O6 ? A G 17 ? B G 17 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 22 ? B G 22 ? 1_555 130.6 ? 21 O6 ? A G 18 ? B G 18 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 22 ? B G 22 ? 1_555 74.6 ? 22 O6 ? A G 8 ? B G 8 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 73.6 ? 23 O6 ? A G 9 ? B G 9 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 131.9 ? 24 O6 ? A G 12 ? B G 12 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 118.5 ? 25 O6 ? A G 13 ? B G 13 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 152.6 ? 26 O6 ? A G 17 ? B G 17 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 75.9 ? 27 O6 ? A G 18 ? B G 18 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 81.6 ? 28 O6 ? A G 22 ? B G 22 ? 1_555 K ? J K . ? B K 109 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 67.9 ? 29 OP1 ? A U 14 ? B U 14 ? 1_555 NA ? H NA . ? B NA 107 ? 1_555 OP1 ? A U 15 ? B U 15 ? 1_555 90.0 ? 30 OP1 ? A U 14 ? B U 14 ? 1_555 NA ? H NA . ? B NA 107 ? 1_555 O ? K HOH . ? B HOH 276 ? 1_555 71.9 ? 31 OP1 ? A U 15 ? B U 15 ? 1_555 NA ? H NA . ? B NA 107 ? 1_555 O ? K HOH . ? B HOH 276 ? 1_555 157.7 ? 32 OP1 ? A U 14 ? B U 14 ? 1_555 NA ? H NA . ? B NA 107 ? 1_555 O ? K HOH . ? B HOH 303 ? 1_555 85.2 ? 33 OP1 ? A U 15 ? B U 15 ? 1_555 NA ? H NA . ? B NA 107 ? 1_555 O ? K HOH . ? B HOH 303 ? 1_555 85.8 ? 34 O ? K HOH . ? B HOH 276 ? 1_555 NA ? H NA . ? B NA 107 ? 1_555 O ? K HOH . ? B HOH 303 ? 1_555 105.1 ? 35 OP1 ? A U 14 ? B U 14 ? 1_555 NA ? H NA . ? B NA 107 ? 1_555 O ? K HOH . ? B HOH 314 ? 1_555 94.0 ? 36 OP1 ? A U 15 ? B U 15 ? 1_555 NA ? H NA . ? B NA 107 ? 1_555 O ? K HOH . ? B HOH 314 ? 1_555 91.7 ? 37 O ? K HOH . ? B HOH 276 ? 1_555 NA ? H NA . ? B NA 107 ? 1_555 O ? K HOH . ? B HOH 314 ? 1_555 77.0 ? 38 O ? K HOH . ? B HOH 303 ? 1_555 NA ? H NA . ? B NA 107 ? 1_555 O ? K HOH . ? B HOH 314 ? 1_555 177.3 ? 39 OP1 ? A U 14 ? B U 14 ? 1_555 NA ? H NA . ? B NA 107 ? 1_555 O ? K HOH . ? B HOH 315 ? 1_555 175.3 ? 40 OP1 ? A U 15 ? B U 15 ? 1_555 NA ? H NA . ? B NA 107 ? 1_555 O ? K HOH . ? B HOH 315 ? 1_555 93.1 ? 41 O ? K HOH . ? B HOH 276 ? 1_555 NA ? H NA . ? B NA 107 ? 1_555 O ? K HOH . ? B HOH 315 ? 1_555 105.7 ? 42 O ? K HOH . ? B HOH 303 ? 1_555 NA ? H NA . ? B NA 107 ? 1_555 O ? K HOH . ? B HOH 315 ? 1_555 91.5 ? 43 O ? K HOH . ? B HOH 314 ? 1_555 NA ? H NA . ? B NA 107 ? 1_555 O ? K HOH . ? B HOH 315 ? 1_555 89.4 ? 44 OP1 ? A U 19 ? B U 19 ? 1_555 MG ? F MG . ? B MG 105 ? 1_555 OP1 ? A U 19 ? B U 19 ? 1_555 0.0 ? 45 OP1 ? A U 19 ? B U 19 ? 1_555 MG ? F MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 249 ? 1_555 85.2 ? 46 OP1 ? A U 19 ? B U 19 ? 1_555 MG ? F MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 249 ? 1_555 85.2 ? 47 OP1 ? A U 19 ? B U 19 ? 1_555 MG ? F MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 249 ? 10_555 93.9 ? 48 OP1 ? A U 19 ? B U 19 ? 1_555 MG ? F MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 249 ? 10_555 93.9 ? 49 O ? K HOH . ? B HOH 249 ? 1_555 MG ? F MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 249 ? 10_555 98.9 ? 50 OP1 ? A U 19 ? B U 19 ? 1_555 MG ? F MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 260 ? 1_555 88.2 ? 51 OP1 ? A U 19 ? B U 19 ? 1_555 MG ? F MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 260 ? 1_555 88.2 ? 52 O ? K HOH . ? B HOH 249 ? 1_555 MG ? F MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 260 ? 1_555 88.6 ? 53 O ? K HOH . ? B HOH 249 ? 10_555 MG ? F MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 260 ? 1_555 172.3 ? 54 OP1 ? A U 19 ? B U 19 ? 1_555 MG ? F MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 260 ? 10_555 92.9 ? 55 OP1 ? A U 19 ? B U 19 ? 1_555 MG ? F MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 260 ? 10_555 92.9 ? 56 O ? K HOH . ? B HOH 249 ? 1_555 MG ? F MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 260 ? 10_555 172.3 ? 57 O ? K HOH . ? B HOH 249 ? 10_555 MG ? F MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 260 ? 10_555 88.6 ? 58 O ? K HOH . ? B HOH 260 ? 1_555 MG ? F MG . ? B MG 105 ? 1_555 O ? K HOH . ? B HOH 260 ? 10_555 83.9 ? 59 OP1 ? A G 25 ? B G 25 ? 1_555 MG ? B MG . ? B MG 101 ? 1_555 O ? K HOH . ? B HOH 223 ? 1_555 100.5 ? 60 OP1 ? A G 25 ? B G 25 ? 1_555 MG ? B MG . ? B MG 101 ? 1_555 O ? K HOH . ? B HOH 227 ? 1_555 78.6 ? 61 O ? K HOH . ? B HOH 223 ? 1_555 MG ? B MG . ? B MG 101 ? 1_555 O ? K HOH . ? B HOH 227 ? 1_555 166.8 ? 62 OP1 ? A G 25 ? B G 25 ? 1_555 MG ? B MG . ? B MG 101 ? 1_555 O ? K HOH . ? B HOH 267 ? 1_555 94.9 ? 63 O ? K HOH . ? B HOH 223 ? 1_555 MG ? B MG . ? B MG 101 ? 1_555 O ? K HOH . ? B HOH 267 ? 1_555 84.9 ? 64 O ? K HOH . ? B HOH 227 ? 1_555 MG ? B MG . ? B MG 101 ? 1_555 O ? K HOH . ? B HOH 267 ? 1_555 82.1 ? 65 OP1 ? A G 25 ? B G 25 ? 1_555 MG ? B MG . ? B MG 101 ? 1_555 O ? K HOH . ? B HOH 292 ? 1_555 170.6 ? 66 O ? K HOH . ? B HOH 223 ? 1_555 MG ? B MG . ? B MG 101 ? 1_555 O ? K HOH . ? B HOH 292 ? 1_555 88.8 ? 67 O ? K HOH . ? B HOH 227 ? 1_555 MG ? B MG . ? B MG 101 ? 1_555 O ? K HOH . ? B HOH 292 ? 1_555 92.8 ? 68 O ? K HOH . ? B HOH 267 ? 1_555 MG ? B MG . ? B MG 101 ? 1_555 O ? K HOH . ? B HOH 292 ? 1_555 87.6 ? 69 OP1 ? A G 25 ? B G 25 ? 1_555 MG ? B MG . ? B MG 101 ? 1_555 O ? K HOH . ? B HOH 307 ? 1_555 92.8 ? 70 O ? K HOH . ? B HOH 223 ? 1_555 MG ? B MG . ? B MG 101 ? 1_555 O ? K HOH . ? B HOH 307 ? 1_555 80.8 ? 71 O ? K HOH . ? B HOH 227 ? 1_555 MG ? B MG . ? B MG 101 ? 1_555 O ? K HOH . ? B HOH 307 ? 1_555 112.4 ? 72 O ? K HOH . ? B HOH 267 ? 1_555 MG ? B MG . ? B MG 101 ? 1_555 O ? K HOH . ? B HOH 307 ? 1_555 164.8 ? 73 O ? K HOH . ? B HOH 292 ? 1_555 MG ? B MG . ? B MG 101 ? 1_555 O ? K HOH . ? B HOH 307 ? 1_555 86.9 ? 74 OP2 ? A G 28 ? B G 28 ? 1_555 MG ? C MG . ? B MG 102 ? 1_555 O4 ? A U 29 ? B U 29 ? 1_555 91.5 ? 75 OP2 ? A G 28 ? B G 28 ? 1_555 MG ? C MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 275 ? 1_555 88.3 ? 76 O4 ? A U 29 ? B U 29 ? 1_555 MG ? C MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 275 ? 1_555 86.0 ? 77 OP2 ? A G 28 ? B G 28 ? 1_555 MG ? C MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 293 ? 1_555 171.8 ? 78 O4 ? A U 29 ? B U 29 ? 1_555 MG ? C MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 293 ? 1_555 82.9 ? 79 O ? K HOH . ? B HOH 275 ? 1_555 MG ? C MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 293 ? 1_555 85.4 ? 80 OP2 ? A G 28 ? B G 28 ? 1_555 MG ? C MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 294 ? 1_555 91.3 ? 81 O4 ? A U 29 ? B U 29 ? 1_555 MG ? C MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 294 ? 1_555 87.7 ? 82 O ? K HOH . ? B HOH 275 ? 1_555 MG ? C MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 294 ? 1_555 173.7 ? 83 O ? K HOH . ? B HOH 293 ? 1_555 MG ? C MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 294 ? 1_555 94.4 ? 84 OP2 ? A G 28 ? B G 28 ? 1_555 MG ? C MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 312 ? 1_555 98.5 ? 85 O4 ? A U 29 ? B U 29 ? 1_555 MG ? C MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 312 ? 1_555 166.3 ? 86 O ? K HOH . ? B HOH 275 ? 1_555 MG ? C MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 312 ? 1_555 85.0 ? 87 O ? K HOH . ? B HOH 293 ? 1_555 MG ? C MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 312 ? 1_555 86.1 ? 88 O ? K HOH . ? B HOH 294 ? 1_555 MG ? C MG . ? B MG 102 ? 1_555 O ? K HOH . ? B HOH 312 ? 1_555 101.2 ? 89 O ? K HOH . ? B HOH 211 ? 1_555 MG ? D MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 226 ? 1_555 90.7 ? 90 O ? K HOH . ? B HOH 211 ? 1_555 MG ? D MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 250 ? 1_555 89.3 ? 91 O ? K HOH . ? B HOH 226 ? 1_555 MG ? D MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 250 ? 1_555 176.8 ? 92 O ? K HOH . ? B HOH 211 ? 1_555 MG ? D MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 272 ? 1_555 92.9 ? 93 O ? K HOH . ? B HOH 226 ? 1_555 MG ? D MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 272 ? 1_555 88.8 ? 94 O ? K HOH . ? B HOH 250 ? 1_555 MG ? D MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 272 ? 1_555 94.4 ? 95 O ? K HOH . ? B HOH 211 ? 1_555 MG ? D MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 299 ? 1_555 90.2 ? 96 O ? K HOH . ? B HOH 226 ? 1_555 MG ? D MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 299 ? 1_555 90.9 ? 97 O ? K HOH . ? B HOH 250 ? 1_555 MG ? D MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 299 ? 1_555 85.9 ? 98 O ? K HOH . ? B HOH 272 ? 1_555 MG ? D MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 299 ? 1_555 176.9 ? 99 O ? K HOH . ? B HOH 211 ? 1_555 MG ? D MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 327 ? 1_555 170.6 ? 100 O ? K HOH . ? B HOH 226 ? 1_555 MG ? D MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 327 ? 1_555 80.2 ? 101 O ? K HOH . ? B HOH 250 ? 1_555 MG ? D MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 327 ? 1_555 99.6 ? 102 O ? K HOH . ? B HOH 272 ? 1_555 MG ? D MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 327 ? 1_555 89.2 ? 103 O ? K HOH . ? B HOH 299 ? 1_555 MG ? D MG . ? B MG 103 ? 1_555 O ? K HOH . ? B HOH 327 ? 1_555 87.7 ? 104 O ? K HOH . ? B HOH 210 ? 1_555 MG ? E MG . ? B MG 104 ? 1_555 O ? K HOH . ? B HOH 232 ? 1_555 93.5 ? 105 O ? K HOH . ? B HOH 210 ? 1_555 MG ? E MG . ? B MG 104 ? 1_555 O ? K HOH . ? B HOH 258 ? 1_555 87.0 ? 106 O ? K HOH . ? B HOH 232 ? 1_555 MG ? E MG . ? B MG 104 ? 1_555 O ? K HOH . ? B HOH 258 ? 1_555 90.4 ? 107 O ? K HOH . ? B HOH 210 ? 1_555 MG ? E MG . ? B MG 104 ? 1_555 O ? K HOH . ? B HOH 274 ? 1_555 87.7 ? 108 O ? K HOH . ? B HOH 232 ? 1_555 MG ? E MG . ? B MG 104 ? 1_555 O ? K HOH . ? B HOH 274 ? 1_555 89.9 ? 109 O ? K HOH . ? B HOH 258 ? 1_555 MG ? E MG . ? B MG 104 ? 1_555 O ? K HOH . ? B HOH 274 ? 1_555 174.7 ? 110 O ? K HOH . ? B HOH 210 ? 1_555 MG ? E MG . ? B MG 104 ? 1_555 O ? K HOH . ? B HOH 339 ? 1_555 175.1 ? 111 O ? K HOH . ? B HOH 232 ? 1_555 MG ? E MG . ? B MG 104 ? 1_555 O ? K HOH . ? B HOH 339 ? 1_555 91.3 ? 112 O ? K HOH . ? B HOH 258 ? 1_555 MG ? E MG . ? B MG 104 ? 1_555 O ? K HOH . ? B HOH 339 ? 1_555 93.9 ? 113 O ? K HOH . ? B HOH 274 ? 1_555 MG ? E MG . ? B MG 104 ? 1_555 O ? K HOH . ? B HOH 339 ? 1_555 91.3 ? 114 O ? K HOH . ? B HOH 210 ? 1_555 MG ? E MG . ? B MG 104 ? 1_555 O ? K HOH . ? B HOH 342 ? 1_555 84.4 ? 115 O ? K HOH . ? B HOH 232 ? 1_555 MG ? E MG . ? B MG 104 ? 1_555 O ? K HOH . ? B HOH 342 ? 1_555 173.4 ? 116 O ? K HOH . ? B HOH 258 ? 1_555 MG ? E MG . ? B MG 104 ? 1_555 O ? K HOH . ? B HOH 342 ? 1_555 83.3 ? 117 O ? K HOH . ? B HOH 274 ? 1_555 MG ? E MG . ? B MG 104 ? 1_555 O ? K HOH . ? B HOH 342 ? 1_555 96.2 ? 118 O ? K HOH . ? B HOH 339 ? 1_555 MG ? E MG . ? B MG 104 ? 1_555 O ? K HOH . ? B HOH 342 ? 1_555 90.9 ? 119 O ? K HOH . ? B HOH 218 ? 1_555 NA ? I NA . ? B NA 108 ? 1_555 O ? K HOH . ? B HOH 236 ? 1_555 91.2 ? 120 O ? K HOH . ? B HOH 218 ? 1_555 NA ? I NA . ? B NA 108 ? 1_555 O ? K HOH . ? B HOH 320 ? 1_555 104.6 ? 121 O ? K HOH . ? B HOH 236 ? 1_555 NA ? I NA . ? B NA 108 ? 1_555 O ? K HOH . ? B HOH 320 ? 1_555 78.8 ? 122 O ? K HOH . ? B HOH 218 ? 1_555 NA ? I NA . ? B NA 108 ? 1_555 O ? K HOH . ? B HOH 325 ? 1_555 74.9 ? 123 O ? K HOH . ? B HOH 236 ? 1_555 NA ? I NA . ? B NA 108 ? 1_555 O ? K HOH . ? B HOH 325 ? 1_555 81.2 ? 124 O ? K HOH . ? B HOH 320 ? 1_555 NA ? I NA . ? B NA 108 ? 1_555 O ? K HOH . ? B HOH 325 ? 1_555 159.9 ? 125 O ? K HOH . ? B HOH 218 ? 1_555 NA ? I NA . ? B NA 108 ? 1_555 O ? K HOH . ? B HOH 341 ? 1_555 108.7 ? 126 O ? K HOH . ? B HOH 236 ? 1_555 NA ? I NA . ? B NA 108 ? 1_555 O ? K HOH . ? B HOH 341 ? 1_555 155.6 ? 127 O ? K HOH . ? B HOH 320 ? 1_555 NA ? I NA . ? B NA 108 ? 1_555 O ? K HOH . ? B HOH 341 ? 1_555 82.5 ? 128 O ? K HOH . ? B HOH 325 ? 1_555 NA ? I NA . ? B NA 108 ? 1_555 O ? K HOH . ? B HOH 341 ? 1_555 117.0 ? 129 O ? K HOH . ? B HOH 218 ? 1_555 NA ? I NA . ? B NA 108 ? 1_555 O ? K HOH . ? B HOH 343 ? 1_555 169.5 ? 130 O ? K HOH . ? B HOH 236 ? 1_555 NA ? I NA . ? B NA 108 ? 1_555 O ? K HOH . ? B HOH 343 ? 1_555 79.4 ? 131 O ? K HOH . ? B HOH 320 ? 1_555 NA ? I NA . ? B NA 108 ? 1_555 O ? K HOH . ? B HOH 343 ? 1_555 78.3 ? 132 O ? K HOH . ? B HOH 325 ? 1_555 NA ? I NA . ? B NA 108 ? 1_555 O ? K HOH . ? B HOH 343 ? 1_555 98.9 ? 133 O ? K HOH . ? B HOH 341 ? 1_555 NA ? I NA . ? B NA 108 ? 1_555 O ? K HOH . ? B HOH 343 ? 1_555 81.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-04-17 2 'Structure model' 1 1 2019-04-24 3 'Structure model' 1 2 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model 7 3 'Structure model' pdbx_struct_conn_angle 8 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_volume' 3 2 'Structure model' '_citation.page_first' 4 2 'Structure model' '_citation.page_last' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation_author.identifier_ORCID' 8 2 'Structure model' '_citation_author.name' 9 3 'Structure model' '_database_2.pdbx_DOI' 10 3 'Structure model' '_database_2.pdbx_database_accession' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 25 3 'Structure model' '_pdbx_struct_conn_angle.value' 26 3 'Structure model' '_struct_conn.pdbx_dist_value' 27 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 28 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 31 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 32 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 33 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 3 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y+1/2,x,z+3/4 3 y+1/2,-x,z+3/4 4 x+1/2,-y,-z+3/4 5 -x+1/2,y,-z+3/4 6 -x,-y,z 7 y,x,-z 8 -y,-x,-z 9 x+1/2,y+1/2,z+1/2 10 -y+1,x+1/2,z+5/4 11 y+1,-x+1/2,z+5/4 12 x+1,-y+1/2,-z+5/4 13 -x+1,y+1/2,-z+5/4 14 -x+1/2,-y+1/2,z+1/2 15 y+1/2,x+1/2,-z+1/2 16 -y+1/2,-x+1/2,-z+1/2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.13_2998 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.13_2998 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O2'" B U 19 ? ? O B HOH 201 ? ? 2.03 2 1 O B HOH 220 ? ? O B HOH 332 ? ? 2.04 3 1 O B HOH 213 ? ? O B HOH 322 ? ? 2.06 4 1 O B HOH 322 ? ? O B HOH 330 ? ? 2.09 5 1 O B HOH 205 ? ? O B HOH 333 ? ? 2.09 6 1 O B HOH 330 ? ? O B HOH 338 ? ? 2.12 7 1 O B HOH 213 ? ? O B HOH 335 ? ? 2.14 8 1 O B HOH 206 ? ? O B HOH 335 ? ? 2.16 9 1 OP2 B G 13 ? ? O B HOH 202 ? ? 2.16 10 1 O B HOH 309 ? ? O B HOH 330 ? ? 2.17 11 1 O B HOH 335 ? ? O B HOH 338 ? ? 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O4'" _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 U _pdbx_validate_symm_contact.auth_seq_id_1 15 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 201 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_554 _pdbx_validate_symm_contact.dist 2.10 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B G 1 ? "O5'" ? A G 1 "O5'" 2 1 Y 1 B G 1 ? "C5'" ? A G 1 "C5'" 3 1 Y 1 B U 26 ? N1 ? A U 26 N1 4 1 Y 1 B U 26 ? C2 ? A U 26 C2 5 1 Y 1 B U 26 ? O2 ? A U 26 O2 6 1 Y 1 B U 26 ? N3 ? A U 26 N3 7 1 Y 1 B U 26 ? C4 ? A U 26 C4 8 1 Y 1 B U 26 ? O4 ? A U 26 O4 9 1 Y 1 B U 26 ? C5 ? A U 26 C5 10 1 Y 1 B U 26 ? C6 ? A U 26 C6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 HZD C10 C N N 114 HZD C01 C N N 115 HZD C03 C Y N 116 HZD C04 C Y N 117 HZD C05 C Y N 118 HZD C06 C N N 119 HZD C07 C Y N 120 HZD C09 C N N 121 HZD C13 C N N 122 HZD C14 C N N 123 HZD C16 C N N 124 HZD C17 C N N 125 HZD C19 C N N 126 HZD C20 C N N 127 HZD C22 C N N 128 HZD C23 C N N 129 HZD C25 C N N 130 HZD C27 C N N 131 HZD C28 C N N 132 HZD C29 C N N 133 HZD C30 C N N 134 HZD C31 C N R 135 HZD C33 C N N 136 HZD C34 C N S 137 HZD C36 C N N 138 HZD C39 C N R 139 HZD C40 C Y N 140 HZD C41 C Y N 141 HZD C43 C Y N 142 HZD C44 C Y N 143 HZD C45 C Y N 144 HZD C46 C Y N 145 HZD C47 C Y N 146 HZD C48 C Y N 147 HZD C49 C Y N 148 HZD C50 C Y N 149 HZD C51 C Y N 150 HZD C52 C Y N 151 HZD N02 N Y N 152 HZD N08 N Y N 153 HZD N12 N N N 154 HZD N24 N N N 155 HZD N35 N N N 156 HZD N38 N N N 157 HZD O11 O N N 158 HZD O15 O N N 159 HZD O18 O N N 160 HZD O21 O N N 161 HZD O26 O N N 162 HZD O37 O N N 163 HZD S32 S N N 164 HZD S42 S Y N 165 HZD H1 H N N 166 HZD H2 H N N 167 HZD H3 H N N 168 HZD H4 H N N 169 HZD H5 H N N 170 HZD H6 H N N 171 HZD H7 H N N 172 HZD H8 H N N 173 HZD H9 H N N 174 HZD H10 H N N 175 HZD H11 H N N 176 HZD H12 H N N 177 HZD H13 H N N 178 HZD H14 H N N 179 HZD H15 H N N 180 HZD H16 H N N 181 HZD H17 H N N 182 HZD H18 H N N 183 HZD H19 H N N 184 HZD H20 H N N 185 HZD H21 H N N 186 HZD H22 H N N 187 HZD H23 H N N 188 HZD H24 H N N 189 HZD H25 H N N 190 HZD H26 H N N 191 HZD H27 H N N 192 HZD H28 H N N 193 HZD H29 H N N 194 HZD H30 H N N 195 HZD H31 H N N 196 HZD H32 H N N 197 HZD H33 H N N 198 HZD H34 H N N 199 HZD H35 H N N 200 HZD H36 H N N 201 HZD H37 H N N 202 HZD H38 H N N 203 HZD H39 H N N 204 HZD H40 H N N 205 HZD H41 H N N 206 HZD H42 H N N 207 HZD H43 H N N 208 HZD H44 H N N 209 HZD H45 H N N 210 HZD H46 H N N 211 HZD H47 H N N 212 HZD H48 H N N 213 HZD H49 H N N 214 HZD H50 H N N 215 K K K N N 216 MG MG MG N N 217 NA NA NA N N 218 U OP3 O N N 219 U P P N N 220 U OP1 O N N 221 U OP2 O N N 222 U "O5'" O N N 223 U "C5'" C N N 224 U "C4'" C N R 225 U "O4'" O N N 226 U "C3'" C N S 227 U "O3'" O N N 228 U "C2'" C N R 229 U "O2'" O N N 230 U "C1'" C N R 231 U N1 N N N 232 U C2 C N N 233 U O2 O N N 234 U N3 N N N 235 U C4 C N N 236 U O4 O N N 237 U C5 C N N 238 U C6 C N N 239 U HOP3 H N N 240 U HOP2 H N N 241 U "H5'" H N N 242 U "H5''" H N N 243 U "H4'" H N N 244 U "H3'" H N N 245 U "HO3'" H N N 246 U "H2'" H N N 247 U "HO2'" H N N 248 U "H1'" H N N 249 U H3 H N N 250 U H5 H N N 251 U H6 H N N 252 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 HZD C50 C51 doub Y N 118 HZD C50 C49 sing Y N 119 HZD C51 C52 sing Y N 120 HZD C49 C48 doub Y N 121 HZD C52 C47 doub Y N 122 HZD C48 C47 sing Y N 123 HZD C48 N02 sing Y N 124 HZD C47 C05 sing Y N 125 HZD C01 N02 sing N N 126 HZD N02 C03 doub Y N 127 HZD C05 C06 sing N N 128 HZD C05 C04 doub Y N 129 HZD C06 C07 sing N N 130 HZD C09 N08 sing N N 131 HZD C09 C10 sing N N 132 HZD C03 C04 sing Y N 133 HZD C07 N08 doub Y N 134 HZD C07 S42 sing Y N 135 HZD O11 C10 doub N N 136 HZD N08 C40 sing Y N 137 HZD C10 N12 sing N N 138 HZD S42 C41 sing Y N 139 HZD C40 C46 doub Y N 140 HZD C40 C41 sing Y N 141 HZD C46 C45 sing Y N 142 HZD C41 C43 doub Y N 143 HZD N12 C13 sing N N 144 HZD C45 C44 doub Y N 145 HZD C43 C44 sing Y N 146 HZD C13 C14 sing N N 147 HZD O15 C14 sing N N 148 HZD O15 C16 sing N N 149 HZD C23 C22 sing N N 150 HZD C23 N24 sing N N 151 HZD C16 C17 sing N N 152 HZD O18 C17 sing N N 153 HZD O18 C19 sing N N 154 HZD C22 O21 sing N N 155 HZD O21 C20 sing N N 156 HZD N24 C25 sing N N 157 HZD C20 C19 sing N N 158 HZD O26 C25 doub N N 159 HZD C25 C27 sing N N 160 HZD C28 C27 sing N N 161 HZD C28 C29 sing N N 162 HZD C29 C30 sing N N 163 HZD C30 C31 sing N N 164 HZD C31 S32 sing N N 165 HZD C31 C39 sing N N 166 HZD S32 C33 sing N N 167 HZD C39 N38 sing N N 168 HZD C39 C34 sing N N 169 HZD N38 C36 sing N N 170 HZD C33 C34 sing N N 171 HZD C34 N35 sing N N 172 HZD C36 O37 doub N N 173 HZD C36 N35 sing N N 174 HZD C01 H1 sing N N 175 HZD C01 H2 sing N N 176 HZD C01 H3 sing N N 177 HZD C03 H4 sing N N 178 HZD C04 H5 sing N N 179 HZD C06 H6 sing N N 180 HZD C06 H7 sing N N 181 HZD C09 H8 sing N N 182 HZD C09 H9 sing N N 183 HZD C13 H10 sing N N 184 HZD C13 H11 sing N N 185 HZD C14 H12 sing N N 186 HZD C14 H13 sing N N 187 HZD C16 H14 sing N N 188 HZD C16 H15 sing N N 189 HZD C17 H16 sing N N 190 HZD C17 H17 sing N N 191 HZD C19 H18 sing N N 192 HZD C19 H19 sing N N 193 HZD C20 H20 sing N N 194 HZD C20 H21 sing N N 195 HZD C22 H22 sing N N 196 HZD C22 H23 sing N N 197 HZD C23 H24 sing N N 198 HZD C23 H25 sing N N 199 HZD C27 H26 sing N N 200 HZD C27 H27 sing N N 201 HZD C28 H28 sing N N 202 HZD C28 H29 sing N N 203 HZD C29 H30 sing N N 204 HZD C29 H31 sing N N 205 HZD C30 H32 sing N N 206 HZD C30 H33 sing N N 207 HZD C31 H34 sing N N 208 HZD C33 H35 sing N N 209 HZD C33 H36 sing N N 210 HZD C34 H37 sing N N 211 HZD C39 H38 sing N N 212 HZD C43 H39 sing N N 213 HZD C44 H40 sing N N 214 HZD C45 H41 sing N N 215 HZD C46 H42 sing N N 216 HZD C49 H43 sing N N 217 HZD C50 H44 sing N N 218 HZD C51 H45 sing N N 219 HZD C52 H46 sing N N 220 HZD N12 H47 sing N N 221 HZD N24 H48 sing N N 222 HZD N35 H49 sing N N 223 HZD N38 H50 sing N N 224 U OP3 P sing N N 225 U OP3 HOP3 sing N N 226 U P OP1 doub N N 227 U P OP2 sing N N 228 U P "O5'" sing N N 229 U OP2 HOP2 sing N N 230 U "O5'" "C5'" sing N N 231 U "C5'" "C4'" sing N N 232 U "C5'" "H5'" sing N N 233 U "C5'" "H5''" sing N N 234 U "C4'" "O4'" sing N N 235 U "C4'" "C3'" sing N N 236 U "C4'" "H4'" sing N N 237 U "O4'" "C1'" sing N N 238 U "C3'" "O3'" sing N N 239 U "C3'" "C2'" sing N N 240 U "C3'" "H3'" sing N N 241 U "O3'" "HO3'" sing N N 242 U "C2'" "O2'" sing N N 243 U "C2'" "C1'" sing N N 244 U "C2'" "H2'" sing N N 245 U "O2'" "HO2'" sing N N 246 U "C1'" N1 sing N N 247 U "C1'" "H1'" sing N N 248 U N1 C2 sing N N 249 U N1 C6 sing N N 250 U C2 O2 doub N N 251 U C2 N3 sing N N 252 U N3 C4 sing N N 253 U N3 H3 sing N N 254 U C4 O4 doub N N 255 U C4 C5 sing N N 256 U C5 C6 doub N N 257 U C5 H5 sing N N 258 U C6 H6 sing N N 259 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6E8U 'double helix' 6E8U 'a-form double helix' 6E8U 'bulge loop' 6E8U 'mismatched base pair' 6E8U 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 37 1_555 -0.306 -0.238 0.255 -1.459 -13.868 -1.581 1 B_G1:C37_B B 1 ? B 37 ? 19 1 1 A U 2 1_555 A A 36 1_555 0.035 -0.107 0.249 0.823 -16.922 2.239 2 B_U2:A36_B B 2 ? B 36 ? 20 1 1 A A 3 1_555 A U 35 1_555 0.025 -0.107 0.247 2.762 -12.109 -1.961 3 B_A3:U35_B B 3 ? B 35 ? 20 1 1 A C 4 1_555 A G 34 1_555 0.274 -0.147 -0.035 6.055 -12.605 0.005 4 B_C4:G34_B B 4 ? B 34 ? 19 1 1 A G 5 1_555 A C 33 1_555 -0.131 -0.141 -0.114 -7.112 -13.665 1.773 5 B_G5:C33_B B 5 ? B 33 ? 19 1 1 A A 6 1_555 A U 32 1_555 0.143 -0.016 -0.113 -13.097 -3.106 -2.406 6 B_A6:U32_B B 6 ? B 32 ? 20 1 1 A A 7 1_555 A G 31 1_555 0.092 1.451 -0.311 -1.813 -0.233 -17.119 7 B_A7:G31_B B 7 ? B 31 ? 8 1 1 A A 11 1_555 A U 30 1_555 -0.279 -0.031 0.123 -10.360 -7.467 -3.641 8 B_A11:U30_B B 11 ? B 30 ? 20 1 1 A G 12 1_555 A G 17 1_555 1.839 3.247 0.116 -6.835 4.489 -89.955 9 B_G12:G17_B B 12 ? B 17 ? 6 3 1 A U 14 1_555 A U 21 1_555 -1.670 1.285 0.210 -5.233 2.219 -177.464 10 B_U14:U21_B B 14 ? B 21 ? 12 2 1 A G 9 1_555 A G 22 1_555 -1.676 -3.445 -0.134 -3.704 -6.164 88.858 11 B_G9:G22_B B 9 ? B 22 ? 6 3 1 A G 13 1_555 A G 18 1_555 1.618 3.491 0.321 -3.423 -8.557 -89.880 12 B_G13:G18_B B 13 ? B 18 ? 6 3 1 A A 20 1_555 A A 27 1_555 -5.361 4.874 -0.317 -25.813 -40.994 -177.548 13 B_A20:A27_B B 20 ? B 27 ? 2 8 1 A G 25 1_555 A G 28 1_555 2.283 1.907 0.010 -38.962 24.828 -114.314 14 B_G25:G28_B B 25 ? B 28 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 37 1_555 A U 2 1_555 A A 36 1_555 0.035 -1.201 3.132 -0.740 8.048 35.524 -2.951 -0.151 2.802 12.984 1.193 36.403 1 BB_G1U2:A36C37_BB B 1 ? B 37 ? B 2 ? B 36 ? 1 A U 2 1_555 A A 36 1_555 A A 3 1_555 A U 35 1_555 -0.368 -1.345 2.933 -1.222 13.354 32.671 -3.854 0.459 2.242 22.590 2.067 35.246 2 BB_U2A3:U35A36_BB B 2 ? B 36 ? B 3 ? B 35 ? 1 A A 3 1_555 A U 35 1_555 A C 4 1_555 A G 34 1_555 0.372 -1.310 3.137 2.862 7.375 33.133 -3.321 -0.215 2.810 12.708 -4.931 34.038 3 BB_A3C4:G34U35_BB B 3 ? B 35 ? B 4 ? B 34 ? 1 A C 4 1_555 A G 34 1_555 A G 5 1_555 A C 33 1_555 0.722 -1.990 3.530 2.112 12.670 28.701 -5.974 -0.952 2.495 24.094 -4.017 31.389 4 BB_C4G5:C33G34_BB B 4 ? B 34 ? B 5 ? B 33 ? 1 A G 5 1_555 A C 33 1_555 A A 6 1_555 A U 32 1_555 0.093 -2.170 3.360 1.261 6.868 33.646 -4.710 0.033 2.876 11.709 -2.150 34.342 5 BB_G5A6:U32C33_BB B 5 ? B 33 ? B 6 ? B 32 ? 1 A A 6 1_555 A U 32 1_555 A A 7 1_555 A G 31 1_555 -1.063 -1.889 3.122 4.847 -0.100 27.353 -3.913 3.298 2.901 -0.210 -10.149 27.772 6 BB_A6A7:G31U32_BB B 6 ? B 32 ? B 7 ? B 31 ? 1 A A 7 1_555 A G 31 1_555 A A 11 1_555 A U 30 1_555 -3.352 -2.046 3.464 -3.749 -3.306 61.600 -1.823 3.073 3.737 -3.223 3.654 61.782 7 BB_A7A11:U30G31_BB B 7 ? B 31 ? B 11 ? B 30 ? 1 A A 11 1_555 A U 30 1_555 A G 12 1_555 A G 17 1_555 -1.203 -3.251 2.968 4.710 0.065 66.676 -2.954 1.259 2.885 0.059 -4.280 66.823 8 BB_A11G12:G17U30_BB B 11 ? B 30 ? B 12 ? B 17 ? 1 A U 14 1_555 A U 21 1_555 A G 9 1_555 A G 22 1_555 -2.546 0.579 -6.098 -6.122 24.042 125.298 0.685 1.517 -5.929 13.478 3.432 126.678 9 BB_U14G9:G22U21_BB B 14 ? B 21 ? B 9 ? B 22 ? 1 A G 9 1_555 A G 22 1_555 A G 13 1_555 A G 18 1_555 -1.627 -3.416 -0.221 -12.531 10.658 179.348 -1.708 0.813 -0.221 5.329 6.266 179.355 10 BB_G9G13:G18G22_BB B 9 ? B 22 ? B 13 ? B 18 ? 1 A A 20 1_555 A A 27 1_555 A G 25 1_555 A G 28 1_555 1.744 -0.011 4.501 2.798 5.034 98.651 -0.119 -1.086 4.533 3.317 -1.844 98.775 11 BB_A20G25:G28A27_BB B 20 ? B 27 ? B 25 ? B 28 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 ;4-[(3-{2,16-dioxo-20-[(3aR,4R,6aS)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-6,9,12-trioxa-3,15-diazaicosan-1-yl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium ; HZD 4 'SODIUM ION' NA 5 'POTASSIUM ION' K 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6E8S _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'light scattering' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'I 41 2 2' _space_group.name_Hall 'I 4bw 2bw' _space_group.IT_number 98 _space_group.crystal_system tetragonal _space_group.id 1 #