HEADER DNA BINDING PROTEIN/DNA 31-JUL-18 6E94 TITLE CRYSTAL STRUCTURE OF ZBTB38 C-TERMINAL ZINC FINGERS 6-9 K1055R IN TITLE 2 COMPLEX WITH METHYLATED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 38; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*GP*TP*CP*TP*GP*(DCM)P*GP*CP*(DCM) COMPND 8 P*GP*AP*TP*GP*AP*GP*TP*GP*C)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*GP*CP*AP*CP*TP*CP*AP*TP*(DCM)P*GP*GP*(DCM) COMPND 13 P*GP*CP*AP*GP*AP*C)-3'); COMPND 14 CHAIN: D; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZBTB38; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21D; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606 KEYWDS ZBTB38 METHYLATED DNA ZINC FINGER, DNA BINDING PROTEIN, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.O.HUDSON,F.G.WHITBY,B.A.BUCK-KOEHNTOP REVDAT 4 13-MAR-24 6E94 1 REMARK REVDAT 3 27-NOV-19 6E94 1 REMARK REVDAT 2 02-JAN-19 6E94 1 JRNL REVDAT 1 07-NOV-18 6E94 0 JRNL AUTH N.O.HUDSON,F.G.WHITBY,B.A.BUCK-KOEHNTOP JRNL TITL STRUCTURAL INSIGHTS INTO METHYLATED DNA RECOGNITION BY THE JRNL TITL 2 C-TERMINAL ZINC FINGERS OF THE DNA READER PROTEIN ZBTB38. JRNL REF J. BIOL. CHEM. V. 293 19835 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30355731 JRNL DOI 10.1074/JBC.RA118.005147 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 37492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 7161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4107 - 4.9490 1.00 2210 240 0.1391 0.1599 REMARK 3 2 4.9490 - 3.9298 1.00 2191 244 0.1405 0.1398 REMARK 3 3 3.9298 - 3.4336 1.00 2205 240 0.1595 0.1714 REMARK 3 4 3.4336 - 3.1198 0.99 2191 238 0.1837 0.1984 REMARK 3 5 3.1198 - 2.8963 1.00 2189 247 0.1978 0.2782 REMARK 3 6 2.8963 - 2.7256 1.00 2210 249 0.1974 0.2455 REMARK 3 7 2.7256 - 2.5892 0.99 2178 243 0.2028 0.2180 REMARK 3 8 2.5892 - 2.4765 1.00 2198 248 0.1881 0.2285 REMARK 3 9 2.4765 - 2.3812 1.00 2186 242 0.1932 0.2117 REMARK 3 10 2.3812 - 2.2990 1.00 2221 249 0.1905 0.2282 REMARK 3 11 2.2990 - 2.2271 0.96 2118 228 0.2252 0.2766 REMARK 3 12 2.2271 - 2.1635 1.00 2161 247 0.1988 0.2370 REMARK 3 13 2.1635 - 2.1065 1.00 2200 243 0.1994 0.2524 REMARK 3 14 2.1065 - 2.0552 0.94 2086 226 0.2411 0.2977 REMARK 3 15 2.0552 - 2.0084 1.00 2208 240 0.2197 0.2551 REMARK 3 16 2.0084 - 1.9657 1.00 2172 246 0.2117 0.2455 REMARK 3 17 1.9657 - 1.9264 0.98 2160 249 0.2377 0.2607 REMARK 3 18 1.9264 - 1.8900 0.94 2089 227 0.3209 0.3276 REMARK 3 19 1.8900 - 1.8563 0.99 2187 244 0.2541 0.2690 REMARK 3 20 1.8563 - 1.8248 1.00 2203 237 0.2092 0.2236 REMARK 3 21 1.8248 - 1.7954 1.00 2175 241 0.2183 0.2027 REMARK 3 22 1.7954 - 1.7678 0.99 2225 249 0.2046 0.2157 REMARK 3 23 1.7678 - 1.7418 1.00 2160 243 0.2091 0.2430 REMARK 3 24 1.7418 - 1.7172 0.99 2197 240 0.2476 0.2816 REMARK 3 25 1.7172 - 1.6940 1.00 2169 240 0.2444 0.2853 REMARK 3 26 1.6940 - 1.6720 0.99 2228 251 0.2299 0.2446 REMARK 3 27 1.6720 - 1.6511 0.99 2182 243 0.2516 0.2763 REMARK 3 28 1.6511 - 1.6312 0.99 2165 237 0.2596 0.2844 REMARK 3 29 1.6312 - 1.6123 0.99 2188 241 0.3144 0.3259 REMARK 3 30 1.6123 - 1.5941 0.61 1321 149 0.3803 0.4097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1782 REMARK 3 ANGLE : 1.016 2549 REMARK 3 CHIRALITY : 0.049 266 REMARK 3 PLANARITY : 0.005 201 REMARK 3 DIHEDRAL : 21.209 909 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -12.6447 -20.0975 -14.0457 REMARK 3 T TENSOR REMARK 3 T11: 0.1387 T22: 0.1381 REMARK 3 T33: 0.1397 T12: -0.0295 REMARK 3 T13: 0.0034 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.4080 L22: 0.3427 REMARK 3 L33: 0.8392 L12: -0.0589 REMARK 3 L13: 0.4373 L23: 0.1759 REMARK 3 S TENSOR REMARK 3 S11: -0.0762 S12: 0.0464 S13: 0.0203 REMARK 3 S21: -0.0232 S22: 0.0024 S23: 0.0075 REMARK 3 S31: -0.0452 S32: 0.1044 S33: -0.0020 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E94 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000235905. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 277.15 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37856 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 38.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25M AMMONIUM CHLORIDE MES (PH:6.0) REMARK 280 19% PEG 6000, PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.87800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.87800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.40200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.63500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.40200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.63500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.87800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.40200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.63500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.87800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.40200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 38.63500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 130 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 138 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1006 REMARK 465 SER A 1007 REMARK 465 ARG A 1008 REMARK 465 HIS A 1120 REMARK 465 ASN A 1121 REMARK 465 GLY A 1122 REMARK 465 LYS A 1123 REMARK 465 GLY A 1124 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A1015 -0.27 -142.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1405 DISTANCE = 6.61 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1012 SG REMARK 620 2 CYS A1015 SG 116.2 REMARK 620 3 HIS A1028 NE2 111.6 99.3 REMARK 620 4 HIS A1032 NE2 108.8 115.8 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1040 SG REMARK 620 2 CYS A1043 SG 115.9 REMARK 620 3 HIS A1056 NE2 108.3 107.3 REMARK 620 4 HIS A1060 NE2 104.9 116.7 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1068 SG REMARK 620 2 CYS A1071 SG 117.6 REMARK 620 3 HIS A1084 NE2 110.0 106.7 REMARK 620 4 HIS A1088 NE2 104.0 115.6 101.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1096 SG REMARK 620 2 CYS A1099 SG 120.1 REMARK 620 3 HIS A1112 NE2 101.2 110.9 REMARK 620 4 HIS A1116 NE2 106.1 116.8 98.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1204 DBREF 6E94 A 1006 1124 UNP Q8NAP3 ZBT38_HUMAN 1006 1124 DBREF 6E94 C 19 36 PDB 6E94 6E94 19 36 DBREF 6E94 D 1 18 PDB 6E94 6E94 1 18 SEQADV 6E94 ARG A 1055 UNP Q8NAP3 LYS 1055 ENGINEERED MUTATION SEQRES 1 A 119 THR SER ARG PRO TYR ALA CYS GLU LEU CYS ALA LYS GLN SEQRES 2 A 119 PHE GLN SER PRO SER THR LEU LYS MET HIS MET ARG CYS SEQRES 3 A 119 HIS THR GLY GLU LYS PRO TYR GLN CYS LYS THR CYS GLY SEQRES 4 A 119 ARG CYS PHE SER VAL GLN GLY ASN LEU GLN ARG HIS GLU SEQRES 5 A 119 ARG ILE HIS LEU GLY LEU LYS GLU PHE VAL CYS GLN TYR SEQRES 6 A 119 CYS ASN LYS ALA PHE THR LEU ASN GLU THR LEU LYS ILE SEQRES 7 A 119 HIS GLU ARG ILE HIS THR GLY GLU LYS ARG TYR HIS CYS SEQRES 8 A 119 GLN PHE CYS PHE GLN ARG PHE LEU TYR LEU SER THR LYS SEQRES 9 A 119 ARG ASN HIS GLU GLN ARG HIS ILE ARG GLU HIS ASN GLY SEQRES 10 A 119 LYS GLY SEQRES 1 C 18 DG DT DC DT DG 5CM DG DC 5CM DG DA DT DG SEQRES 2 C 18 DA DG DT DG DC SEQRES 1 D 18 DG DC DA DC DT DC DA DT 5CM DG DG 5CM DG SEQRES 2 D 18 DC DA DG DA DC HET 5CM C 24 33 HET 5CM C 27 33 HET 5CM D 9 33 HET 5CM D 12 33 HET ZN A1201 1 HET ZN A1202 1 HET ZN A1203 1 HET ZN A1204 1 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION FORMUL 2 5CM 4(C10 H16 N3 O7 P) FORMUL 4 ZN 4(ZN 2+) FORMUL 8 HOH *202(H2 O) HELIX 1 AA1 SER A 1021 GLY A 1034 1 14 HELIX 2 AA2 VAL A 1049 GLY A 1062 1 14 HELIX 3 AA3 LEU A 1077 GLY A 1090 1 14 HELIX 4 AA4 TYR A 1105 GLU A 1119 1 15 SHEET 1 AA1 2 TYR A1010 ALA A1011 0 SHEET 2 AA1 2 GLN A1018 PHE A1019 -1 O PHE A1019 N TYR A1010 SHEET 1 AA2 2 TYR A1038 GLN A1039 0 SHEET 2 AA2 2 CYS A1046 PHE A1047 -1 O PHE A1047 N TYR A1038 SHEET 1 AA3 2 PHE A1066 VAL A1067 0 SHEET 2 AA3 2 ALA A1074 PHE A1075 -1 O PHE A1075 N PHE A1066 SHEET 1 AA4 2 TYR A1094 HIS A1095 0 SHEET 2 AA4 2 ARG A1102 PHE A1103 -1 O PHE A1103 N TYR A1094 LINK O3' DG C 23 P 5CM C 24 1555 1555 1.60 LINK O3' 5CM C 24 P DG C 25 1555 1555 1.60 LINK O3' DC C 26 P 5CM C 27 1555 1555 1.60 LINK O3' 5CM C 27 P DG C 28 1555 1555 1.60 LINK O3' DT D 8 P 5CM D 9 1555 1555 1.61 LINK O3' 5CM D 9 P DG D 10 1555 1555 1.61 LINK O3' DG D 11 P 5CM D 12 1555 1555 1.60 LINK O3' 5CM D 12 P DG D 13 1555 1555 1.60 LINK SG CYS A1012 ZN ZN A1204 1555 1555 2.31 LINK SG CYS A1015 ZN ZN A1204 1555 1555 2.28 LINK NE2 HIS A1028 ZN ZN A1204 1555 1555 2.03 LINK NE2 HIS A1032 ZN ZN A1204 1555 1555 2.14 LINK SG CYS A1040 ZN ZN A1201 1555 1555 2.26 LINK SG CYS A1043 ZN ZN A1201 1555 1555 2.27 LINK NE2 HIS A1056 ZN ZN A1201 1555 1555 2.08 LINK NE2 HIS A1060 ZN ZN A1201 1555 1555 1.95 LINK SG CYS A1068 ZN ZN A1203 1555 1555 2.34 LINK SG CYS A1071 ZN ZN A1203 1555 1555 2.22 LINK NE2 HIS A1084 ZN ZN A1203 1555 1555 2.10 LINK NE2 HIS A1088 ZN ZN A1203 1555 1555 2.13 LINK SG CYS A1096 ZN ZN A1202 1555 1555 2.30 LINK SG CYS A1099 ZN ZN A1202 1555 1555 2.28 LINK NE2 HIS A1112 ZN ZN A1202 1555 1555 2.07 LINK NE2 HIS A1116 ZN ZN A1202 1555 1555 2.08 SITE 1 AC1 4 CYS A1040 CYS A1043 HIS A1056 HIS A1060 SITE 1 AC2 4 CYS A1096 CYS A1099 HIS A1112 HIS A1116 SITE 1 AC3 4 CYS A1068 CYS A1071 HIS A1084 HIS A1088 SITE 1 AC4 4 CYS A1012 CYS A1015 HIS A1028 HIS A1032 CRYST1 70.804 77.270 103.756 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014123 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012942 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009638 0.00000 CONECT 30 1730 CONECT 53 1730 CONECT 157 1730 CONECT 192 1730 CONECT 255 1727 CONECT 277 1727 CONECT 381 1727 CONECT 419 1727 CONECT 481 1729 CONECT 508 1729 CONECT 615 1729 CONECT 653 1729 CONECT 721 1728 CONECT 747 1728 CONECT 868 1728 CONECT 907 1728 CONECT 1023 1054 CONECT 1037 1038 1043 1046 CONECT 1038 1037 1039 1044 CONECT 1039 1038 1040 CONECT 1040 1039 1041 1045 CONECT 1041 1040 1042 1043 CONECT 1042 1041 1057 1058 1059 CONECT 1043 1037 1041 1060 CONECT 1044 1038 CONECT 1045 1040 1061 1062 CONECT 1046 1037 1047 1050 1063 CONECT 1047 1046 1048 1064 1065 CONECT 1048 1047 1049 1051 1066 CONECT 1049 1048 1050 1052 1067 CONECT 1050 1046 1049 CONECT 1051 1048 1070 CONECT 1052 1049 1053 1068 1069 CONECT 1053 1052 1054 CONECT 1054 1023 1053 1055 1056 CONECT 1055 1054 CONECT 1056 1054 CONECT 1057 1042 CONECT 1058 1042 CONECT 1059 1042 CONECT 1060 1043 CONECT 1061 1045 CONECT 1062 1045 CONECT 1063 1046 CONECT 1064 1047 CONECT 1065 1047 CONECT 1066 1048 CONECT 1067 1049 CONECT 1068 1052 CONECT 1069 1052 CONECT 1070 1051 CONECT 1100 1128 CONECT 1111 1112 1117 1120 CONECT 1112 1111 1113 1118 CONECT 1113 1112 1114 CONECT 1114 1113 1115 1119 CONECT 1115 1114 1116 1117 CONECT 1116 1115 1131 1132 1133 CONECT 1117 1111 1115 1134 CONECT 1118 1112 CONECT 1119 1114 1135 1136 CONECT 1120 1111 1121 1124 1137 CONECT 1121 1120 1122 1138 1139 CONECT 1122 1121 1123 1125 1140 CONECT 1123 1122 1124 1126 1141 CONECT 1124 1120 1123 CONECT 1125 1122 1144 CONECT 1126 1123 1127 1142 1143 CONECT 1127 1126 1128 CONECT 1128 1100 1127 1129 1130 CONECT 1129 1128 CONECT 1130 1128 CONECT 1131 1116 CONECT 1132 1116 CONECT 1133 1116 CONECT 1134 1117 CONECT 1135 1119 CONECT 1136 1119 CONECT 1137 1120 CONECT 1138 1121 CONECT 1139 1121 CONECT 1140 1122 CONECT 1141 1123 CONECT 1142 1126 CONECT 1143 1126 CONECT 1144 1125 CONECT 1480 1509 CONECT 1492 1493 1498 1501 CONECT 1493 1492 1494 1499 CONECT 1494 1493 1495 CONECT 1495 1494 1496 1500 CONECT 1496 1495 1497 1498 CONECT 1497 1496 1512 1513 1514 CONECT 1498 1492 1496 1515 CONECT 1499 1493 CONECT 1500 1495 1516 1517 CONECT 1501 1492 1502 1505 1518 CONECT 1502 1501 1503 1519 1520 CONECT 1503 1502 1504 1506 1521 CONECT 1504 1503 1505 1507 1522 CONECT 1505 1501 1504 CONECT 1506 1503 1525 CONECT 1507 1504 1508 1523 1524 CONECT 1508 1507 1509 CONECT 1509 1480 1508 1510 1511 CONECT 1510 1509 CONECT 1511 1509 CONECT 1512 1497 CONECT 1513 1497 CONECT 1514 1497 CONECT 1515 1498 CONECT 1516 1500 CONECT 1517 1500 CONECT 1518 1501 CONECT 1519 1502 CONECT 1520 1502 CONECT 1521 1503 CONECT 1522 1504 CONECT 1523 1507 CONECT 1524 1507 CONECT 1525 1506 CONECT 1555 1586 CONECT 1569 1570 1575 1578 CONECT 1570 1569 1571 1576 CONECT 1571 1570 1572 CONECT 1572 1571 1573 1577 CONECT 1573 1572 1574 1575 CONECT 1574 1573 1589 1590 1591 CONECT 1575 1569 1573 1592 CONECT 1576 1570 CONECT 1577 1572 1593 1594 CONECT 1578 1569 1579 1582 1595 CONECT 1579 1578 1580 1596 1597 CONECT 1580 1579 1581 1583 1598 CONECT 1581 1580 1582 1584 1599 CONECT 1582 1578 1581 CONECT 1583 1580 1602 CONECT 1584 1581 1585 1600 1601 CONECT 1585 1584 1586 CONECT 1586 1555 1585 1587 1588 CONECT 1587 1586 CONECT 1588 1586 CONECT 1589 1574 CONECT 1590 1574 CONECT 1591 1574 CONECT 1592 1575 CONECT 1593 1577 CONECT 1594 1577 CONECT 1595 1578 CONECT 1596 1579 CONECT 1597 1579 CONECT 1598 1580 CONECT 1599 1581 CONECT 1600 1584 CONECT 1601 1584 CONECT 1602 1583 CONECT 1727 255 277 381 419 CONECT 1728 721 747 868 907 CONECT 1729 481 508 615 653 CONECT 1730 30 53 157 192 MASTER 365 0 8 4 8 0 4 6 1877 3 160 14 END