HEADER HYDROLASE/HYDROLASE INHIBITOR 02-AUG-18 6EAA TITLE X-RAY CRYSTAL STRUCTURE OF PF-M1 IN COMPLEX WITH INHIBITOR (6I) AND TITLE 2 CATALYTIC ZINC ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: M1 FAMILY AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 195 TO 1084; COMPND 5 SYNONYM: PFA-M1; COMPND 6 EC: 3.4.11.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE FCB1 / SOURCE 3 COLUMBIA); SOURCE 4 ORGANISM_TAXID: 186763; SOURCE 5 STRAIN: ISOLATE FCB1 / COLUMBIA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PTRCHIS-2B KEYWDS M1 ALANYL-AMINOPEPTIDASE, PROTEASE, INHIBITOR, HYDROXAMIC ACID, KEYWDS 2 HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.DRINKWATER,S.MCGOWAN REVDAT 4 13-MAR-24 6EAA 1 LINK REVDAT 3 01-JAN-20 6EAA 1 REMARK REVDAT 2 24-APR-19 6EAA 1 JRNL REVDAT 1 26-DEC-18 6EAA 0 JRNL AUTH N.B.VINH,N.DRINKWATER,T.R.MALCOLM,M.KASSIOU,L.LUCANTONI, JRNL AUTH 2 P.M.GRIN,G.S.BUTLER,S.DUFFY,C.M.OVERALL,V.M.AVERY, JRNL AUTH 3 P.J.SCAMMELLS,S.MCGOWAN JRNL TITL HYDROXAMIC ACID INHIBITORS PROVIDE CROSS-SPECIES INHIBITION JRNL TITL 2 OF PLASMODIUM M1 AND M17 AMINOPEPTIDASES. JRNL REF J. MED. CHEM. V. 62 622 2019 JRNL REFN ISSN 1520-4804 JRNL PMID 30537832 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01310 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 115967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 5776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4151 - 5.1247 1.00 3936 239 0.1562 0.1678 REMARK 3 2 5.1247 - 4.0684 1.00 3828 189 0.1206 0.1396 REMARK 3 3 4.0684 - 3.5543 1.00 3754 206 0.1228 0.1451 REMARK 3 4 3.5543 - 3.2295 1.00 3782 174 0.1323 0.1546 REMARK 3 5 3.2295 - 2.9980 1.00 3723 198 0.1417 0.1818 REMARK 3 6 2.9980 - 2.8213 1.00 3733 194 0.1461 0.1964 REMARK 3 7 2.8213 - 2.6800 1.00 3705 205 0.1496 0.1885 REMARK 3 8 2.6800 - 2.5634 1.00 3726 191 0.1496 0.1875 REMARK 3 9 2.5634 - 2.4647 1.00 3675 220 0.1458 0.1877 REMARK 3 10 2.4647 - 2.3796 1.00 3721 178 0.1466 0.1975 REMARK 3 11 2.3796 - 2.3052 1.00 3687 196 0.1478 0.1967 REMARK 3 12 2.3052 - 2.2393 1.00 3698 189 0.1452 0.1798 REMARK 3 13 2.2393 - 2.1804 1.00 3677 182 0.1418 0.2045 REMARK 3 14 2.1804 - 2.1272 1.00 3698 204 0.1467 0.1779 REMARK 3 15 2.1272 - 2.0788 1.00 3643 220 0.1414 0.1658 REMARK 3 16 2.0788 - 2.0346 1.00 3652 211 0.1442 0.1777 REMARK 3 17 2.0346 - 1.9939 1.00 3685 200 0.1510 0.1625 REMARK 3 18 1.9939 - 1.9563 1.00 3690 188 0.1555 0.2130 REMARK 3 19 1.9563 - 1.9213 1.00 3650 200 0.1588 0.1901 REMARK 3 20 1.9213 - 1.8888 1.00 3651 190 0.1665 0.1990 REMARK 3 21 1.8888 - 1.8583 1.00 3693 183 0.1788 0.2084 REMARK 3 22 1.8583 - 1.8297 0.99 3641 192 0.1973 0.2486 REMARK 3 23 1.8297 - 1.8028 0.99 3661 154 0.1999 0.2175 REMARK 3 24 1.8028 - 1.7774 0.99 3639 192 0.1935 0.2187 REMARK 3 25 1.7774 - 1.7534 0.98 3562 180 0.1987 0.2205 REMARK 3 26 1.7534 - 1.7306 0.98 3638 178 0.2098 0.2582 REMARK 3 27 1.7306 - 1.7090 0.97 3568 166 0.2292 0.2721 REMARK 3 28 1.7090 - 1.6884 0.96 3491 209 0.2349 0.3084 REMARK 3 29 1.6884 - 1.6688 0.96 3502 178 0.2456 0.2485 REMARK 3 30 1.6688 - 1.6500 0.95 3482 170 0.2621 0.3236 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 7608 REMARK 3 ANGLE : 1.368 10331 REMARK 3 CHIRALITY : 0.115 1139 REMARK 3 PLANARITY : 0.008 1320 REMARK 3 DIHEDRAL : 13.980 2891 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 17.9271 3.8949 10.2300 REMARK 3 T TENSOR REMARK 3 T11: 0.0893 T22: 0.1030 REMARK 3 T33: 0.0894 T12: -0.0070 REMARK 3 T13: 0.0074 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.3433 L22: 0.6286 REMARK 3 L33: 0.4788 L12: -0.1179 REMARK 3 L13: 0.0248 L23: 0.1139 REMARK 3 S TENSOR REMARK 3 S11: -0.0333 S12: -0.0083 S13: 0.0320 REMARK 3 S21: -0.0052 S22: 0.0037 S23: -0.0137 REMARK 3 S31: -0.0364 S32: -0.0018 S33: 0.0294 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EAA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000235992. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SILICON 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116053 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 49.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 1.03000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% (V/V) PEG 8000, 10% (V/V) REMARK 280 GLYCEROL, 0.1 M TRIS PH 8.5, 0.2 M MGCL2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.69950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.86000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.86000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.69950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 LYS A 252 CD CE NZ REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 LYS A 405 CD CE NZ REMARK 470 LYS A 407 CD CE NZ REMARK 470 LYS A 480 CE NZ REMARK 470 LYS A 609 CG CD CE NZ REMARK 470 ASN A 635 CG OD1 ND2 REMARK 470 GLU A 663 CG CD OE1 OE2 REMARK 470 LYS A 682 CG CD CE NZ REMARK 470 GLU A 683 CG CD OE1 OE2 REMARK 470 LYS A 790 CE NZ REMARK 470 HIS A 815 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 941 CG CD CE NZ REMARK 470 LYS A 973 CG CD CE NZ REMARK 470 LYS A1030 CE NZ REMARK 470 LYS A1075 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 274 -42.96 -134.75 REMARK 500 LYS A 311 -118.19 59.05 REMARK 500 VAL A 459 -149.31 -132.22 REMARK 500 GLU A 463 36.32 -90.74 REMARK 500 LEU A 475 -34.47 -130.48 REMARK 500 ASN A 505 -60.26 -95.62 REMARK 500 THR A 508 -167.77 -111.80 REMARK 500 SER A 549 -73.35 -96.03 REMARK 500 PHE A 736 73.49 53.53 REMARK 500 VAL A 986 -55.37 -123.13 REMARK 500 LYS A 988 -132.89 48.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A1008 0.17 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2500 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A2501 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2502 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A2503 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A2504 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A2505 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A2506 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A2507 DISTANCE = 7.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1109 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 250 O REMARK 620 2 HOH A1304 O 92.6 REMARK 620 3 HOH A1433 O 88.5 93.4 REMARK 620 4 HOH A1906 O 167.7 98.5 85.5 REMARK 620 5 HOH A1932 O 96.6 82.5 173.6 90.2 REMARK 620 6 HOH A2036 O 88.5 178.1 88.2 80.6 95.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 496 NE2 REMARK 620 2 HIS A 500 NE2 97.9 REMARK 620 3 GLU A 519 OE1 100.7 101.0 REMARK 620 4 J1V A1102 O 108.7 151.2 85.1 REMARK 620 5 J1V A1102 OAC 96.0 90.1 158.3 76.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1107 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1508 O REMARK 620 2 HOH A1659 O 97.1 REMARK 620 3 HOH A1692 O 89.4 88.9 REMARK 620 4 HOH A2158 O 86.1 176.3 92.9 REMARK 620 5 HOH A2362 O 169.9 88.5 99.2 88.1 REMARK 620 6 HOH A2497 O 78.9 91.6 168.3 87.3 92.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1110 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1301 O REMARK 620 2 HOH A1498 O 89.3 REMARK 620 3 HOH A1776 O 97.6 89.9 REMARK 620 4 HOH A2226 O 93.3 172.5 96.7 REMARK 620 5 HOH A2374 O 172.2 95.9 88.2 80.9 REMARK 620 6 HOH A2444 O 90.7 89.1 171.6 83.8 83.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J1V A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1111 DBREF 6EAA A 196 1084 UNP O96935 AMP1_PLAFQ 196 1084 SEQADV 6EAA GLN A 213 UNP O96935 ASN 213 ENGINEERED MUTATION SEQADV 6EAA GLN A 223 UNP O96935 ASN 223 ENGINEERED MUTATION SEQADV 6EAA PRO A 378 UNP O96935 HIS 378 ENGINEERED MUTATION SEQADV 6EAA GLN A 501 UNP O96935 ASN 501 ENGINEERED MUTATION SEQADV 6EAA GLN A 745 UNP O96935 ASN 745 ENGINEERED MUTATION SEQADV 6EAA GLN A 795 UNP O96935 ASN 795 ENGINEERED MUTATION SEQADV 6EAA GLN A 1069 UNP O96935 ASN 1069 ENGINEERED MUTATION SEQRES 1 A 889 PRO LYS ILE HIS TYR ARG LYS ASP TYR LYS PRO SER GLY SEQRES 2 A 889 PHE ILE ILE ASN GLN VAL THR LEU ASN ILE ASN ILE HIS SEQRES 3 A 889 ASP GLN GLU THR ILE VAL ARG SER VAL LEU ASP MET ASP SEQRES 4 A 889 ILE SER LYS HIS ASN VAL GLY GLU ASP LEU VAL PHE ASP SEQRES 5 A 889 GLY VAL GLY LEU LYS ILE ASN GLU ILE SER ILE ASN ASN SEQRES 6 A 889 LYS LYS LEU VAL GLU GLY GLU GLU TYR THR TYR ASP ASN SEQRES 7 A 889 GLU PHE LEU THR ILE PHE SER LYS PHE VAL PRO LYS SER SEQRES 8 A 889 LYS PHE ALA PHE SER SER GLU VAL ILE ILE HIS PRO GLU SEQRES 9 A 889 THR ASN TYR ALA LEU THR GLY LEU TYR LYS SER LYS ASN SEQRES 10 A 889 ILE ILE VAL SER GLN CYS GLU ALA THR GLY PHE ARG ARG SEQRES 11 A 889 ILE THR PHE PHE ILE ASP ARG PRO ASP MET MET ALA LYS SEQRES 12 A 889 TYR ASP VAL THR VAL THR ALA ASP LYS GLU LYS TYR PRO SEQRES 13 A 889 VAL LEU LEU SER ASN GLY ASP LYS VAL ASN GLU PHE GLU SEQRES 14 A 889 ILE PRO GLY GLY ARG HIS GLY ALA ARG PHE ASN ASP PRO SEQRES 15 A 889 PRO LEU LYS PRO CYS TYR LEU PHE ALA VAL VAL ALA GLY SEQRES 16 A 889 ASP LEU LYS HIS LEU SER ALA THR TYR ILE THR LYS TYR SEQRES 17 A 889 THR LYS LYS LYS VAL GLU LEU TYR VAL PHE SER GLU GLU SEQRES 18 A 889 LYS TYR VAL SER LYS LEU GLN TRP ALA LEU GLU CYS LEU SEQRES 19 A 889 LYS LYS SER MET ALA PHE ASP GLU ASP TYR PHE GLY LEU SEQRES 20 A 889 GLU TYR ASP LEU SER ARG LEU ASN LEU VAL ALA VAL SER SEQRES 21 A 889 ASP PHE ASN VAL GLY ALA MET GLU ASN LYS GLY LEU ASN SEQRES 22 A 889 ILE PHE ASN ALA ASN SER LEU LEU ALA SER LYS LYS ASN SEQRES 23 A 889 SER ILE ASP PHE SER TYR ALA ARG ILE LEU THR VAL VAL SEQRES 24 A 889 GLY HIS GLU TYR PHE HIS GLN TYR THR GLY ASN ARG VAL SEQRES 25 A 889 THR LEU ARG ASP TRP PHE GLN LEU THR LEU LYS GLU GLY SEQRES 26 A 889 LEU THR VAL HIS ARG GLU ASN LEU PHE SER GLU GLU MET SEQRES 27 A 889 THR LYS THR VAL THR THR ARG LEU SER HIS VAL ASP LEU SEQRES 28 A 889 LEU ARG SER VAL GLN PHE LEU GLU ASP SER SER PRO LEU SEQRES 29 A 889 SER HIS PRO ILE ARG PRO GLU SER TYR VAL SER MET GLU SEQRES 30 A 889 ASN PHE TYR THR THR THR VAL TYR ASP LYS GLY SER GLU SEQRES 31 A 889 VAL MET ARG MET TYR LEU THR ILE LEU GLY GLU GLU TYR SEQRES 32 A 889 TYR LYS LYS GLY PHE ASP ILE TYR ILE LYS LYS ASN ASP SEQRES 33 A 889 GLY ASN THR ALA THR CYS GLU ASP PHE ASN TYR ALA MET SEQRES 34 A 889 GLU GLN ALA TYR LYS MET LYS LYS ALA ASP ASN SER ALA SEQRES 35 A 889 ASN LEU ASN GLN TYR LEU LEU TRP PHE SER GLN SER GLY SEQRES 36 A 889 THR PRO HIS VAL SER PHE LYS TYR ASN TYR ASP ALA GLU SEQRES 37 A 889 LYS LYS GLN TYR SER ILE HIS VAL ASN GLN TYR THR LYS SEQRES 38 A 889 PRO ASP GLU ASN GLN LYS GLU LYS LYS PRO LEU PHE ILE SEQRES 39 A 889 PRO ILE SER VAL GLY LEU ILE ASN PRO GLU ASN GLY LYS SEQRES 40 A 889 GLU MET ILE SER GLN THR THR LEU GLU LEU THR LYS GLU SEQRES 41 A 889 SER ASP THR PHE VAL PHE ASN ASN ILE ALA VAL LYS PRO SEQRES 42 A 889 ILE PRO SER LEU PHE ARG GLY PHE SER ALA PRO VAL TYR SEQRES 43 A 889 ILE GLU ASP GLN LEU THR ASP GLU GLU ARG ILE LEU LEU SEQRES 44 A 889 LEU LYS TYR ASP SER ASP ALA PHE VAL ARG TYR ASN SER SEQRES 45 A 889 CYS THR ASN ILE TYR MET LYS GLN ILE LEU MET ASN TYR SEQRES 46 A 889 ASN GLU PHE LEU LYS ALA LYS ASN GLU LYS LEU GLU SER SEQRES 47 A 889 PHE GLN LEU THR PRO VAL ASN ALA GLN PHE ILE ASP ALA SEQRES 48 A 889 ILE LYS TYR LEU LEU GLU ASP PRO HIS ALA ASP ALA GLY SEQRES 49 A 889 PHE LYS SER TYR ILE VAL SER LEU PRO GLN ASP ARG TYR SEQRES 50 A 889 ILE ILE ASN PHE VAL SER ASN LEU ASP THR ASP VAL LEU SEQRES 51 A 889 ALA ASP THR LYS GLU TYR ILE TYR LYS GLN ILE GLY ASP SEQRES 52 A 889 LYS LEU ASN ASP VAL TYR TYR LYS MET PHE LYS SER LEU SEQRES 53 A 889 GLU ALA LYS ALA ASP ASP LEU THR TYR PHE ASN ASP GLU SEQRES 54 A 889 SER HIS VAL ASP PHE ASP GLN MET ASN MET ARG THR LEU SEQRES 55 A 889 ARG ASN THR LEU LEU SER LEU LEU SER LYS ALA GLN TYR SEQRES 56 A 889 PRO ASN ILE LEU ASN GLU ILE ILE GLU HIS SER LYS SER SEQRES 57 A 889 PRO TYR PRO SER ASN TRP LEU THR SER LEU SER VAL SER SEQRES 58 A 889 ALA TYR PHE ASP LYS TYR PHE GLU LEU TYR ASP LYS THR SEQRES 59 A 889 TYR LYS LEU SER LYS ASP ASP GLU LEU LEU LEU GLN GLU SEQRES 60 A 889 TRP LEU LYS THR VAL SER ARG SER ASP ARG LYS ASP ILE SEQRES 61 A 889 TYR GLU ILE LEU LYS LYS LEU GLU ASN GLU VAL LEU LYS SEQRES 62 A 889 ASP SER LYS ASN PRO ASN ASP ILE ARG ALA VAL TYR LEU SEQRES 63 A 889 PRO PHE THR ASN ASN LEU ARG ARG PHE HIS ASP ILE SER SEQRES 64 A 889 GLY LYS GLY TYR LYS LEU ILE ALA GLU VAL ILE THR LYS SEQRES 65 A 889 THR ASP LYS PHE ASN PRO MET VAL ALA THR GLN LEU CYS SEQRES 66 A 889 GLU PRO PHE LYS LEU TRP ASN LYS LEU ASP THR LYS ARG SEQRES 67 A 889 GLN GLU LEU MET LEU ASN GLU MET ASN THR MET LEU GLN SEQRES 68 A 889 GLU PRO GLN ILE SER ASN ASN LEU LYS GLU TYR LEU LEU SEQRES 69 A 889 ARG LEU THR ASN LYS HET ZN A1101 1 HET J1V A1102 29 HET GOL A1103 6 HET GOL A1104 6 HET GOL A1105 6 HET GOL A1106 6 HET MG A1107 1 HET PO4 A1108 5 HET MG A1109 1 HET MG A1110 1 HET GOL A1111 6 HETNAM ZN ZINC ION HETNAM J1V N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(3',4',5'-TRIFLUORO[1, HETNAM 2 J1V 1'-BIPHENYL]-4-YL)ETHYL]CYCLOHEXANECARBOXAMIDE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 J1V C21 H21 F3 N2 O3 FORMUL 4 GOL 5(C3 H8 O3) FORMUL 8 MG 3(MG 2+) FORMUL 9 PO4 O4 P 3- FORMUL 13 HOH *1307(H2 O) HELIX 1 AA1 LYS A 202 TYR A 204 5 3 HELIX 2 AA2 SER A 280 VAL A 283 5 4 HELIX 3 AA3 HIS A 297 ASN A 301 5 5 HELIX 4 AA4 GLY A 322 ILE A 326 5 5 HELIX 5 AA5 PRO A 381 PHE A 385 5 5 HELIX 6 AA6 LYS A 417 LYS A 421 5 5 HELIX 7 AA7 LEU A 422 GLY A 441 1 20 HELIX 8 AA8 ASN A 473 LEU A 475 5 3 HELIX 9 AA9 ASP A 484 HIS A 500 1 17 HELIX 10 AB1 ASP A 511 PHE A 513 5 3 HELIX 11 AB2 GLN A 514 LYS A 535 1 22 HELIX 12 AB3 VAL A 537 SER A 556 1 20 HELIX 13 AB4 SER A 570 PHE A 574 5 5 HELIX 14 AB5 THR A 576 ASP A 611 1 36 HELIX 15 AB6 THR A 616 ALA A 633 1 18 HELIX 16 AB7 ASN A 640 TYR A 642 5 3 HELIX 17 AB8 LEU A 643 GLN A 648 1 6 HELIX 18 AB9 THR A 747 ASP A 758 1 12 HELIX 19 AC1 ASP A 760 GLU A 789 1 30 HELIX 20 AC2 ASN A 800 GLU A 812 1 13 HELIX 21 AC3 ASP A 817 VAL A 825 1 9 HELIX 22 AC4 GLN A 829 ILE A 834 1 6 HELIX 23 AC5 ASN A 835 VAL A 837 5 3 HELIX 24 AC6 ASP A 841 LEU A 871 1 31 HELIX 25 AC7 LEU A 871 ASP A 876 1 6 HELIX 26 AC8 ASP A 888 ALA A 908 1 21 HELIX 27 AC9 ASN A 912 SER A 921 1 10 HELIX 28 AD1 TYR A 925 SER A 936 1 12 HELIX 29 AD2 ALA A 937 PHE A 939 5 3 HELIX 30 AD3 LYS A 941 LYS A 954 1 14 HELIX 31 AD4 ASP A 956 ARG A 969 1 14 HELIX 32 AD5 ASP A 974 VAL A 986 1 13 HELIX 33 AD6 ASN A 992 ASN A 1005 1 14 HELIX 34 AD7 ASN A 1006 HIS A 1011 1 6 HELIX 35 AD8 GLY A 1015 LYS A 1030 1 16 HELIX 36 AD9 ASN A 1032 CYS A 1040 1 9 HELIX 37 AE1 GLU A 1041 LEU A 1049 5 9 HELIX 38 AE2 ASP A 1050 GLN A 1066 1 17 HELIX 39 AE3 SER A 1071 THR A 1082 1 12 SHEET 1 AA1 2 HIS A 199 TYR A 200 0 SHEET 2 AA1 2 SER A 567 TYR A 568 -1 O TYR A 568 N HIS A 199 SHEET 1 AA2 8 LYS A 261 LYS A 262 0 SHEET 2 AA2 8 LYS A 252 ILE A 258 -1 N ILE A 258 O LYS A 261 SHEET 3 AA2 8 PHE A 288 ILE A 296 -1 O GLU A 293 N ASN A 254 SHEET 4 AA2 8 THR A 225 ILE A 235 -1 N LEU A 231 O PHE A 290 SHEET 5 AA2 8 PHE A 209 ILE A 220 -1 N ASN A 217 O ARG A 228 SHEET 6 AA2 8 ALA A 337 ASP A 346 1 O THR A 342 N ILE A 218 SHEET 7 AA2 8 ARG A 369 LYS A 380 -1 O PHE A 374 N VAL A 341 SHEET 8 AA2 8 ASP A 358 ILE A 365 -1 N VAL A 360 O ARG A 373 SHEET 1 AA3 3 LEU A 244 ASP A 247 0 SHEET 2 AA3 3 PHE A 275 ILE A 278 -1 O ILE A 278 N LEU A 244 SHEET 3 AA3 3 TYR A 269 TYR A 271 -1 N THR A 270 O THR A 277 SHEET 1 AA4 4 GLY A 306 SER A 310 0 SHEET 2 AA4 4 ILE A 313 GLN A 317 -1 O GLN A 317 N GLY A 306 SHEET 3 AA4 4 VAL A 387 GLY A 390 -1 O ALA A 389 N ILE A 314 SHEET 4 AA4 4 VAL A 352 SER A 355 -1 N LEU A 354 O VAL A 388 SHEET 1 AA5 5 LEU A 392 ILE A 400 0 SHEET 2 AA5 5 LYS A 407 GLU A 415 -1 O VAL A 408 N TYR A 399 SHEET 3 AA5 5 ARG A 448 VAL A 454 1 O LEU A 451 N PHE A 413 SHEET 4 AA5 5 LEU A 467 ASN A 471 1 O PHE A 470 N VAL A 452 SHEET 5 AA5 5 ALA A 461 MET A 462 -1 N MET A 462 O ILE A 469 SHEET 1 AA6 2 THR A 508 LEU A 509 0 SHEET 2 AA6 2 THR A 614 ALA A 615 1 O ALA A 615 N THR A 508 SHEET 1 AA7 4 SER A 716 PHE A 721 0 SHEET 2 AA7 4 GLN A 666 TYR A 674 -1 N TYR A 667 O PHE A 721 SHEET 3 AA7 4 HIS A 653 ASP A 661 -1 N HIS A 653 O TYR A 674 SHEET 4 AA7 4 TYR A 741 GLU A 743 1 O TYR A 741 N VAL A 654 SHEET 1 AA8 3 THR A 708 LEU A 712 0 SHEET 2 AA8 3 ILE A 689 ILE A 696 -1 N ILE A 689 O LEU A 712 SHEET 3 AA8 3 ILE A 729 LEU A 732 -1 O SER A 731 N GLY A 694 LINK O GLY A 250 MG MG A1109 1555 1555 2.03 LINK NE2 HIS A 496 ZN ZN A1101 1555 1555 2.07 LINK NE2 HIS A 500 ZN ZN A1101 1555 1555 2.09 LINK OE1 GLU A 519 ZN ZN A1101 1555 1555 2.05 LINK ZN ZN A1101 O J1V A1102 1555 1555 2.05 LINK ZN ZN A1101 OAC J1V A1102 1555 1555 2.20 LINK MG MG A1107 O HOH A1508 1555 1555 2.39 LINK MG MG A1107 O HOH A1659 1555 1555 2.28 LINK MG MG A1107 O HOH A1692 1555 1555 2.00 LINK MG MG A1107 O HOH A2158 1555 1555 2.14 LINK MG MG A1107 O HOH A2362 1555 1555 1.96 LINK MG MG A1107 O HOH A2497 1555 1555 2.28 LINK MG MG A1109 O HOH A1304 1555 2555 2.16 LINK MG MG A1109 O HOH A1433 1555 1555 2.21 LINK MG MG A1109 O HOH A1906 1555 1555 2.16 LINK MG MG A1109 O HOH A1932 1555 1555 1.93 LINK MG MG A1109 O HOH A2036 1555 1555 2.36 LINK MG MG A1110 O HOH A1301 1555 1555 2.04 LINK MG MG A1110 O HOH A1498 1555 1555 2.22 LINK MG MG A1110 O HOH A1776 1555 1555 2.19 LINK MG MG A1110 O HOH A2226 1555 1555 2.21 LINK MG MG A1110 O HOH A2374 1555 1555 2.35 LINK MG MG A1110 O HOH A2444 1555 1555 2.22 CISPEP 1 GLU A 319 ALA A 320 0 -3.42 SITE 1 AC1 4 HIS A 496 HIS A 500 GLU A 519 J1V A1102 SITE 1 AC2 20 THR A 305 GLN A 317 GLU A 319 ALA A 320 SITE 2 AC2 20 ASN A 458 VAL A 459 GLY A 460 ALA A 461 SITE 3 AC2 20 GLU A 463 ARG A 489 HIS A 496 GLU A 497 SITE 4 AC2 20 HIS A 500 GLU A 519 GLU A 572 TYR A 575 SITE 5 AC2 20 TYR A 580 MET A1034 ZN A1101 GOL A1105 SITE 1 AC3 7 VAL A 245 ASP A 247 PHE A 275 ILE A 330 SITE 2 AC3 7 HOH A1276 HOH A1439 HOH A1453 SITE 1 AC4 7 ASN A 573 TYR A 575 THR A 576 THR A1037 SITE 2 AC4 7 TYR A1077 HOH A1204 HOH A1224 SITE 1 AC5 7 TYR A 575 THR A 576 TYR A 580 ASP A 581 SITE 2 AC5 7 J1V A1102 HOH A1347 HOH A1814 SITE 1 AC6 6 VAL A 825 SER A 826 TYR A 853 THR A 900 SITE 2 AC6 6 SER A 903 HOH A2027 SITE 1 AC7 6 HOH A1508 HOH A1659 HOH A1692 HOH A2158 SITE 2 AC7 6 HOH A2362 HOH A2497 SITE 1 AC8 7 ASN A 273 GLU A 699 ASN A 700 TYR A 757 SITE 2 AC8 7 HOH A1304 HOH A1317 HOH A2152 SITE 1 AC9 6 GLY A 250 HOH A1304 HOH A1433 HOH A1906 SITE 2 AC9 6 HOH A1932 HOH A2036 SITE 1 AD1 7 GLU A 957 HOH A1301 HOH A1498 HOH A1776 SITE 2 AD1 7 HOH A2226 HOH A2374 HOH A2444 SITE 1 AD2 10 ALA A 303 THR A 305 ARG A 325 GLU A 572 SITE 2 AD2 10 PRO A1033 HOH A1331 HOH A1638 HOH A1643 SITE 3 AD2 10 HOH A1867 HOH A1945 CRYST1 75.399 108.850 117.720 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013263 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008495 0.00000