data_6EB7 # _entry.id 6EB7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.358 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6EB7 pdb_00006eb7 10.2210/pdb6eb7/pdb WWPDB D_1000235990 ? ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 6EBB _pdbx_database_related.db_name PDB _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6EB7 _pdbx_database_status.recvd_initial_deposition_date 2018-08-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Riboldi-Tunnicliffe, A.' 1 0000-0003-2244-2486 'Issacs, N.W.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'YycF homologue (SP1227) Receiver Domain Activated by BeF3' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # _citation_author.citation_id primary _citation_author.name 'Riboldi-Tunnicliffe, A.' _citation_author.ordinal 1 _citation_author.identifier_ORCID 0000-0003-2244-2486 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6EB7 _cell.details ? _cell.formula_units_Z ? _cell.length_a 74.563 _cell.length_a_esd ? _cell.length_b 93.324 _cell.length_b_esd ? _cell.length_c 37.456 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EB7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA-binding response regulator' 13254.328 1 ? ? ? ? 2 non-polymer syn 'BERYLLIUM TRIFLUORIDE ION' 66.007 1 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 4 water nat water 18.015 98 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAK DSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR ; _entity_poly.pdbx_seq_one_letter_code_can ;KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAK DSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 LYS n 1 3 ILE n 1 4 LEU n 1 5 ILE n 1 6 VAL n 1 7 ASP n 1 8 ASP n 1 9 GLU n 1 10 LYS n 1 11 PRO n 1 12 ILE n 1 13 SER n 1 14 ASP n 1 15 ILE n 1 16 ILE n 1 17 LYS n 1 18 PHE n 1 19 ASN n 1 20 MET n 1 21 THR n 1 22 LYS n 1 23 GLU n 1 24 GLY n 1 25 TYR n 1 26 GLU n 1 27 VAL n 1 28 VAL n 1 29 THR n 1 30 ALA n 1 31 PHE n 1 32 ASN n 1 33 GLY n 1 34 ARG n 1 35 GLU n 1 36 ALA n 1 37 LEU n 1 38 GLU n 1 39 GLN n 1 40 PHE n 1 41 GLU n 1 42 ALA n 1 43 GLU n 1 44 GLN n 1 45 PRO n 1 46 ASP n 1 47 ILE n 1 48 ILE n 1 49 ILE n 1 50 LEU n 1 51 ASP n 1 52 LEU n 1 53 MET n 1 54 LEU n 1 55 PRO n 1 56 GLU n 1 57 ILE n 1 58 ASP n 1 59 GLY n 1 60 LEU n 1 61 GLU n 1 62 VAL n 1 63 ALA n 1 64 LYS n 1 65 THR n 1 66 ILE n 1 67 ARG n 1 68 LYS n 1 69 THR n 1 70 SER n 1 71 SER n 1 72 VAL n 1 73 PRO n 1 74 ILE n 1 75 LEU n 1 76 MET n 1 77 LEU n 1 78 SER n 1 79 ALA n 1 80 LYS n 1 81 ASP n 1 82 SER n 1 83 GLU n 1 84 PHE n 1 85 ASP n 1 86 LYS n 1 87 VAL n 1 88 ILE n 1 89 GLY n 1 90 LEU n 1 91 GLU n 1 92 LEU n 1 93 GLY n 1 94 ALA n 1 95 ASP n 1 96 ASP n 1 97 TYR n 1 98 VAL n 1 99 THR n 1 100 LYS n 1 101 PRO n 1 102 PHE n 1 103 SER n 1 104 ASN n 1 105 ARG n 1 106 GLU n 1 107 LEU n 1 108 GLN n 1 109 ALA n 1 110 ARG n 1 111 VAL n 1 112 LYS n 1 113 ALA n 1 114 LEU n 1 115 LEU n 1 116 ARG n 1 117 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 117 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SP_1227 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC BAA-334 / TIGR4' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 170187 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A0H2UQ68_STRPN _struct_ref.pdbx_db_accession A0A0H2UQ68 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAK DSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR ; _struct_ref.pdbx_align_begin 2 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6EB7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 117 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A0H2UQ68 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 118 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 118 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BEF non-polymer . 'BERYLLIUM TRIFLUORIDE ION' ? 'Be F3 -1' 66.007 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6EB7 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;36% v/v PEG 300, 5% w/v PEG 1,000 100 mM Sodium Acetate pH 5.5 ; _exptl_crystal_grow.pdbx_pH_range '6.3 - 6.5' # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR CCD 130 mm' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2001-04-06 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Silicon Crystal' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ELETTRA BEAMLINE 5.2R' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_synchrotron_site ELETTRA # _reflns.B_iso_Wilson_estimate 20.890 _reflns.entry_id 6EB7 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.58 _reflns.d_resolution_low 29.21 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17717 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.42 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.38 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.06079 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.58 _reflns_shell.d_res_low 1.636 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.09 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1742 _reflns_shell.percent_possible_all 95.65 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.6138 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.665 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 86.000 _refine.B_iso_mean 30.9256 _refine.B_iso_min 14.070 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6EB7 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.5800 _refine.ls_d_res_low 29.2100 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17699 _refine.ls_number_reflns_R_free 911 _refine.ls_number_reflns_R_work 16788 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.4400 _refine.ls_percent_reflns_R_free 5.1500 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1960 _refine.ls_R_factor_R_free 0.2155 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1949 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.9000 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.5800 _refine_hist.d_res_low 29.2100 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 98 _refine_hist.number_atoms_total 1032 _refine_hist.pdbx_number_residues_total 116 _refine_hist.pdbx_B_iso_mean_ligand 25.15 _refine_hist.pdbx_B_iso_mean_solvent 43.05 _refine_hist.pdbx_number_atoms_protein 929 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.5800 1.6633 2488 . 139 2349 97.0000 . . . 0.3885 0.0000 0.3747 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 1.6633 1.7675 2518 . 128 2390 97.0000 . . . 0.3319 0.0000 0.3232 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 1.7675 1.9040 2522 . 144 2378 98.0000 . . . 0.2856 0.0000 0.2690 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 1.9040 2.0955 2536 . 130 2406 98.0000 . . . 0.2491 0.0000 0.2067 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.0955 2.3986 2561 . 128 2433 98.0000 . . . 0.1782 0.0000 0.1714 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.3986 3.0215 2542 . 123 2419 97.0000 . . . 0.1975 0.0000 0.1766 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 3.0215 29.2146 2532 . 119 2413 92.0000 . . . 0.1772 0.0000 0.1631 . . . . . . 7 . . . # _struct.entry_id 6EB7 _struct.title 'YycF homologue (SP1227) Receiver Domain Activated by BeF3' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6EB7 _struct_keywords.text 'BeF3 Activated, YycF Homologue, Response Regulator, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 9 ? GLU A 23 ? GLU A 10 GLU A 24 1 ? 15 HELX_P HELX_P2 AA2 ASN A 32 ? GLN A 44 ? ASN A 33 GLN A 45 1 ? 13 HELX_P HELX_P3 AA3 ASP A 58 ? LYS A 68 ? ASP A 59 LYS A 69 1 ? 11 HELX_P HELX_P4 AA4 SER A 82 ? LEU A 92 ? SER A 83 LEU A 93 1 ? 11 HELX_P HELX_P5 AA5 SER A 103 ? ARG A 117 ? SER A 104 ARG A 118 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 8 OD1 ? ? ? 1_555 C MN . MN ? ? A ASP 9 A MN 202 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc2 metalc ? ? A ASP 51 OD1 ? ? ? 1_555 B BEF . BE ? ? A ASP 52 A BEF 201 1_555 ? ? ? ? ? ? ? 1.439 ? ? metalc3 metalc ? ? A ASP 51 OD2 ? ? ? 1_555 C MN . MN ? ? A ASP 52 A MN 202 1_555 ? ? ? ? ? ? ? 2.047 ? ? metalc4 metalc ? ? A MET 53 O ? ? ? 1_555 C MN . MN ? ? A MET 54 A MN 202 1_555 ? ? ? ? ? ? ? 2.169 ? ? metalc5 metalc ? ? B BEF . F2 ? ? ? 1_555 C MN . MN ? ? A BEF 201 A MN 202 1_555 ? ? ? ? ? ? ? 2.049 ? ? metalc6 metalc ? ? C MN . MN ? ? ? 1_555 D HOH . O ? ? A MN 202 A HOH 306 1_555 ? ? ? ? ? ? ? 2.249 ? ? metalc7 metalc ? ? C MN . MN ? ? ? 1_555 D HOH . O ? ? A MN 202 A HOH 347 1_555 ? ? ? ? ? ? ? 2.229 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 100 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 101 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 101 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 102 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.21 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 26 ? ALA A 30 ? GLU A 27 ALA A 31 AA1 2 LYS A 2 ? VAL A 6 ? LYS A 3 VAL A 7 AA1 3 ILE A 47 ? LEU A 50 ? ILE A 48 LEU A 51 AA1 4 ILE A 74 ? SER A 78 ? ILE A 75 SER A 79 AA1 5 ASP A 96 ? THR A 99 ? ASP A 97 THR A 100 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLU A 26 ? O GLU A 27 N ILE A 3 ? N ILE A 4 AA1 2 3 N VAL A 6 ? N VAL A 7 O ILE A 49 ? O ILE A 50 AA1 3 4 N ILE A 48 ? N ILE A 49 O LEU A 75 ? O LEU A 76 AA1 4 5 N MET A 76 ? N MET A 77 O VAL A 98 ? O VAL A 99 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BEF 201 ? 9 'binding site for residue BEF A 201' AC2 Software A MN 202 ? 6 'binding site for residue MN A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 ASP A 51 ? ASP A 52 . ? 1_555 ? 2 AC1 9 LEU A 52 ? LEU A 53 . ? 1_555 ? 3 AC1 9 MET A 53 ? MET A 54 . ? 1_555 ? 4 AC1 9 SER A 78 ? SER A 79 . ? 1_555 ? 5 AC1 9 ALA A 79 ? ALA A 80 . ? 1_555 ? 6 AC1 9 LYS A 100 ? LYS A 101 . ? 1_555 ? 7 AC1 9 MN C . ? MN A 202 . ? 1_555 ? 8 AC1 9 HOH D . ? HOH A 306 . ? 1_555 ? 9 AC1 9 HOH D . ? HOH A 368 . ? 1_555 ? 10 AC2 6 ASP A 8 ? ASP A 9 . ? 1_555 ? 11 AC2 6 ASP A 51 ? ASP A 52 . ? 1_555 ? 12 AC2 6 MET A 53 ? MET A 54 . ? 1_555 ? 13 AC2 6 BEF B . ? BEF A 201 . ? 1_555 ? 14 AC2 6 HOH D . ? HOH A 306 . ? 1_555 ? 15 AC2 6 HOH D . ? HOH A 347 . ? 1_555 ? # _atom_sites.entry_id 6EB7 _atom_sites.fract_transf_matrix[1][1] 0.013411 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010715 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026698 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol BE C F MN N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 2 2 LYS LYS A . n A 1 2 LYS 2 3 3 LYS LYS A . n A 1 3 ILE 3 4 4 ILE ILE A . n A 1 4 LEU 4 5 5 LEU LEU A . n A 1 5 ILE 5 6 6 ILE ILE A . n A 1 6 VAL 6 7 7 VAL VAL A . n A 1 7 ASP 7 8 8 ASP ASP A . n A 1 8 ASP 8 9 9 ASP ASP A . n A 1 9 GLU 9 10 10 GLU GLU A . n A 1 10 LYS 10 11 11 LYS LYS A . n A 1 11 PRO 11 12 12 PRO PRO A . n A 1 12 ILE 12 13 13 ILE ILE A . n A 1 13 SER 13 14 14 SER SER A . n A 1 14 ASP 14 15 15 ASP ASP A . n A 1 15 ILE 15 16 16 ILE ILE A . n A 1 16 ILE 16 17 17 ILE ILE A . n A 1 17 LYS 17 18 18 LYS LYS A . n A 1 18 PHE 18 19 19 PHE PHE A . n A 1 19 ASN 19 20 20 ASN ASN A . n A 1 20 MET 20 21 21 MET MET A . n A 1 21 THR 21 22 22 THR THR A . n A 1 22 LYS 22 23 23 LYS LYS A . n A 1 23 GLU 23 24 24 GLU GLU A . n A 1 24 GLY 24 25 25 GLY GLY A . n A 1 25 TYR 25 26 26 TYR TYR A . n A 1 26 GLU 26 27 27 GLU GLU A . n A 1 27 VAL 27 28 28 VAL VAL A . n A 1 28 VAL 28 29 29 VAL VAL A . n A 1 29 THR 29 30 30 THR THR A . n A 1 30 ALA 30 31 31 ALA ALA A . n A 1 31 PHE 31 32 32 PHE PHE A . n A 1 32 ASN 32 33 33 ASN ASN A . n A 1 33 GLY 33 34 34 GLY GLY A . n A 1 34 ARG 34 35 35 ARG ARG A . n A 1 35 GLU 35 36 36 GLU GLU A . n A 1 36 ALA 36 37 37 ALA ALA A . n A 1 37 LEU 37 38 38 LEU LEU A . n A 1 38 GLU 38 39 39 GLU GLU A . n A 1 39 GLN 39 40 40 GLN GLN A . n A 1 40 PHE 40 41 41 PHE PHE A . n A 1 41 GLU 41 42 42 GLU GLU A . n A 1 42 ALA 42 43 43 ALA ALA A . n A 1 43 GLU 43 44 44 GLU GLU A . n A 1 44 GLN 44 45 45 GLN GLN A . n A 1 45 PRO 45 46 46 PRO PRO A . n A 1 46 ASP 46 47 47 ASP ASP A . n A 1 47 ILE 47 48 48 ILE ILE A . n A 1 48 ILE 48 49 49 ILE ILE A . n A 1 49 ILE 49 50 50 ILE ILE A . n A 1 50 LEU 50 51 51 LEU LEU A . n A 1 51 ASP 51 52 52 ASP ASP A . n A 1 52 LEU 52 53 53 LEU LEU A . n A 1 53 MET 53 54 54 MET MET A . n A 1 54 LEU 54 55 55 LEU LEU A . n A 1 55 PRO 55 56 56 PRO PRO A . n A 1 56 GLU 56 57 57 GLU GLU A . n A 1 57 ILE 57 58 58 ILE ILE A . n A 1 58 ASP 58 59 59 ASP ASP A . n A 1 59 GLY 59 60 60 GLY GLY A . n A 1 60 LEU 60 61 61 LEU LEU A . n A 1 61 GLU 61 62 62 GLU GLU A . n A 1 62 VAL 62 63 63 VAL VAL A . n A 1 63 ALA 63 64 64 ALA ALA A . n A 1 64 LYS 64 65 65 LYS LYS A . n A 1 65 THR 65 66 66 THR THR A . n A 1 66 ILE 66 67 67 ILE ILE A . n A 1 67 ARG 67 68 68 ARG ARG A . n A 1 68 LYS 68 69 69 LYS LYS A . n A 1 69 THR 69 70 70 THR THR A . n A 1 70 SER 70 71 71 SER SER A . n A 1 71 SER 71 72 72 SER SER A . n A 1 72 VAL 72 73 73 VAL VAL A . n A 1 73 PRO 73 74 74 PRO PRO A . n A 1 74 ILE 74 75 75 ILE ILE A . n A 1 75 LEU 75 76 76 LEU LEU A . n A 1 76 MET 76 77 77 MET MET A . n A 1 77 LEU 77 78 78 LEU LEU A . n A 1 78 SER 78 79 79 SER SER A . n A 1 79 ALA 79 80 80 ALA ALA A . n A 1 80 LYS 80 81 81 LYS LYS A . n A 1 81 ASP 81 82 82 ASP ASP A . n A 1 82 SER 82 83 83 SER SER A . n A 1 83 GLU 83 84 84 GLU GLU A . n A 1 84 PHE 84 85 85 PHE PHE A . n A 1 85 ASP 85 86 86 ASP ASP A . n A 1 86 LYS 86 87 87 LYS LYS A . n A 1 87 VAL 87 88 88 VAL VAL A . n A 1 88 ILE 88 89 89 ILE ILE A . n A 1 89 GLY 89 90 90 GLY GLY A . n A 1 90 LEU 90 91 91 LEU LEU A . n A 1 91 GLU 91 92 92 GLU GLU A . n A 1 92 LEU 92 93 93 LEU LEU A . n A 1 93 GLY 93 94 94 GLY GLY A . n A 1 94 ALA 94 95 95 ALA ALA A . n A 1 95 ASP 95 96 96 ASP ASP A . n A 1 96 ASP 96 97 97 ASP ASP A . n A 1 97 TYR 97 98 98 TYR TYR A . n A 1 98 VAL 98 99 99 VAL VAL A . n A 1 99 THR 99 100 100 THR THR A . n A 1 100 LYS 100 101 101 LYS LYS A . n A 1 101 PRO 101 102 102 PRO PRO A . n A 1 102 PHE 102 103 103 PHE PHE A . n A 1 103 SER 103 104 104 SER SER A . n A 1 104 ASN 104 105 105 ASN ASN A . n A 1 105 ARG 105 106 106 ARG ARG A . n A 1 106 GLU 106 107 107 GLU GLU A . n A 1 107 LEU 107 108 108 LEU LEU A . n A 1 108 GLN 108 109 109 GLN GLN A . n A 1 109 ALA 109 110 110 ALA ALA A . n A 1 110 ARG 110 111 111 ARG ARG A . n A 1 111 VAL 111 112 112 VAL VAL A . n A 1 112 LYS 112 113 113 LYS LYS A . n A 1 113 ALA 113 114 114 ALA ALA A . n A 1 114 LEU 114 115 115 LEU LEU A . n A 1 115 LEU 115 116 116 LEU LEU A . n A 1 116 ARG 116 117 117 ARG ARG A . n A 1 117 ARG 117 118 118 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BEF 1 201 131 BEF BEF A . C 3 MN 1 202 1 MN MN A . D 4 HOH 1 301 23 HOH HOH A . D 4 HOH 2 302 119 HOH HOH A . D 4 HOH 3 303 50 HOH HOH A . D 4 HOH 4 304 26 HOH HOH A . D 4 HOH 5 305 49 HOH HOH A . D 4 HOH 6 306 9 HOH HOH A . D 4 HOH 7 307 27 HOH HOH A . D 4 HOH 8 308 66 HOH HOH A . D 4 HOH 9 309 46 HOH HOH A . D 4 HOH 10 310 21 HOH HOH A . D 4 HOH 11 311 73 HOH HOH A . D 4 HOH 12 312 55 HOH HOH A . D 4 HOH 13 313 13 HOH HOH A . D 4 HOH 14 314 11 HOH HOH A . D 4 HOH 15 315 34 HOH HOH A . D 4 HOH 16 316 14 HOH HOH A . D 4 HOH 17 317 47 HOH HOH A . D 4 HOH 18 318 3 HOH HOH A . D 4 HOH 19 319 122 HOH HOH A . D 4 HOH 20 320 6 HOH HOH A . D 4 HOH 21 321 29 HOH HOH A . D 4 HOH 22 322 70 HOH HOH A . D 4 HOH 23 323 33 HOH HOH A . D 4 HOH 24 324 25 HOH HOH A . D 4 HOH 25 325 38 HOH HOH A . D 4 HOH 26 326 53 HOH HOH A . D 4 HOH 27 327 41 HOH HOH A . D 4 HOH 28 328 20 HOH HOH A . D 4 HOH 29 329 35 HOH HOH A . D 4 HOH 30 330 8 HOH HOH A . D 4 HOH 31 331 39 HOH HOH A . D 4 HOH 32 332 2 HOH HOH A . D 4 HOH 33 333 58 HOH HOH A . D 4 HOH 34 334 24 HOH HOH A . D 4 HOH 35 335 64 HOH HOH A . D 4 HOH 36 336 19 HOH HOH A . D 4 HOH 37 337 76 HOH HOH A . D 4 HOH 38 338 48 HOH HOH A . D 4 HOH 39 339 28 HOH HOH A . D 4 HOH 40 340 1 HOH HOH A . D 4 HOH 41 341 10 HOH HOH A . D 4 HOH 42 342 81 HOH HOH A . D 4 HOH 43 343 7 HOH HOH A . D 4 HOH 44 344 31 HOH HOH A . D 4 HOH 45 345 17 HOH HOH A . D 4 HOH 46 346 117 HOH HOH A . D 4 HOH 47 347 40 HOH HOH A . D 4 HOH 48 348 121 HOH HOH A . D 4 HOH 49 349 112 HOH HOH A . D 4 HOH 50 350 109 HOH HOH A . D 4 HOH 51 351 15 HOH HOH A . D 4 HOH 52 352 30 HOH HOH A . D 4 HOH 53 353 94 HOH HOH A . D 4 HOH 54 354 18 HOH HOH A . D 4 HOH 55 355 54 HOH HOH A . D 4 HOH 56 356 51 HOH HOH A . D 4 HOH 57 357 123 HOH HOH A . D 4 HOH 58 358 37 HOH HOH A . D 4 HOH 59 359 16 HOH HOH A . D 4 HOH 60 360 97 HOH HOH A . D 4 HOH 61 361 67 HOH HOH A . D 4 HOH 62 362 63 HOH HOH A . D 4 HOH 63 363 43 HOH HOH A . D 4 HOH 64 364 45 HOH HOH A . D 4 HOH 65 365 69 HOH HOH A . D 4 HOH 66 366 4 HOH HOH A . D 4 HOH 67 367 88 HOH HOH A . D 4 HOH 68 368 105 HOH HOH A . D 4 HOH 69 369 62 HOH HOH A . D 4 HOH 70 370 12 HOH HOH A . D 4 HOH 71 371 44 HOH HOH A . D 4 HOH 72 372 5 HOH HOH A . D 4 HOH 73 373 77 HOH HOH A . D 4 HOH 74 374 60 HOH HOH A . D 4 HOH 75 375 72 HOH HOH A . D 4 HOH 76 376 78 HOH HOH A . D 4 HOH 77 377 106 HOH HOH A . D 4 HOH 78 378 96 HOH HOH A . D 4 HOH 79 379 86 HOH HOH A . D 4 HOH 80 380 104 HOH HOH A . D 4 HOH 81 381 74 HOH HOH A . D 4 HOH 82 382 114 HOH HOH A . D 4 HOH 83 383 85 HOH HOH A . D 4 HOH 84 384 75 HOH HOH A . D 4 HOH 85 385 22 HOH HOH A . D 4 HOH 86 386 57 HOH HOH A . D 4 HOH 87 387 89 HOH HOH A . D 4 HOH 88 388 120 HOH HOH A . D 4 HOH 89 389 79 HOH HOH A . D 4 HOH 90 390 95 HOH HOH A . D 4 HOH 91 391 65 HOH HOH A . D 4 HOH 92 392 108 HOH HOH A . D 4 HOH 93 393 116 HOH HOH A . D 4 HOH 94 394 98 HOH HOH A . D 4 HOH 95 395 56 HOH HOH A . D 4 HOH 96 396 84 HOH HOH A . D 4 HOH 97 397 42 HOH HOH A . D 4 HOH 98 398 111 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 372 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 8 ? A ASP 9 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 OD2 ? A ASP 51 ? A ASP 52 ? 1_555 89.1 ? 2 OD1 ? A ASP 8 ? A ASP 9 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 O ? A MET 53 ? A MET 54 ? 1_555 87.8 ? 3 OD2 ? A ASP 51 ? A ASP 52 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 O ? A MET 53 ? A MET 54 ? 1_555 92.2 ? 4 OD1 ? A ASP 8 ? A ASP 9 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 F2 ? B BEF . ? A BEF 201 ? 1_555 171.9 ? 5 OD2 ? A ASP 51 ? A ASP 52 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 F2 ? B BEF . ? A BEF 201 ? 1_555 82.9 ? 6 O ? A MET 53 ? A MET 54 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 F2 ? B BEF . ? A BEF 201 ? 1_555 92.0 ? 7 OD1 ? A ASP 8 ? A ASP 9 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 O ? D HOH . ? A HOH 306 ? 1_555 91.3 ? 8 OD2 ? A ASP 51 ? A ASP 52 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 O ? D HOH . ? A HOH 306 ? 1_555 90.7 ? 9 O ? A MET 53 ? A MET 54 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 O ? D HOH . ? A HOH 306 ? 1_555 176.9 ? 10 F2 ? B BEF . ? A BEF 201 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 O ? D HOH . ? A HOH 306 ? 1_555 89.2 ? 11 OD1 ? A ASP 8 ? A ASP 9 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 O ? D HOH . ? A HOH 347 ? 1_555 89.3 ? 12 OD2 ? A ASP 51 ? A ASP 52 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 O ? D HOH . ? A HOH 347 ? 1_555 176.6 ? 13 O ? A MET 53 ? A MET 54 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 O ? D HOH . ? A HOH 347 ? 1_555 90.7 ? 14 F2 ? B BEF . ? A BEF 201 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 O ? D HOH . ? A HOH 347 ? 1_555 98.8 ? 15 O ? D HOH . ? A HOH 306 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 O ? D HOH . ? A HOH 347 ? 1_555 86.3 ? 16 OD1 ? A ASP 51 ? A ASP 52 ? 1_555 BE ? B BEF . ? A BEF 201 ? 1_555 F1 ? B BEF . ? A BEF 201 ? 1_555 112.6 ? 17 OD1 ? A ASP 51 ? A ASP 52 ? 1_555 BE ? B BEF . ? A BEF 201 ? 1_555 F2 ? B BEF . ? A BEF 201 ? 1_555 108.9 ? 18 F1 ? B BEF . ? A BEF 201 ? 1_555 BE ? B BEF . ? A BEF 201 ? 1_555 F2 ? B BEF . ? A BEF 201 ? 1_555 107.7 ? 19 OD1 ? A ASP 51 ? A ASP 52 ? 1_555 BE ? B BEF . ? A BEF 201 ? 1_555 F3 ? B BEF . ? A BEF 201 ? 1_555 113.0 ? 20 F1 ? B BEF . ? A BEF 201 ? 1_555 BE ? B BEF . ? A BEF 201 ? 1_555 F3 ? B BEF . ? A BEF 201 ? 1_555 109.0 ? 21 F2 ? B BEF . ? A BEF 201 ? 1_555 BE ? B BEF . ? A BEF 201 ? 1_555 F3 ? B BEF . ? A BEF 201 ? 1_555 105.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-11-13 2 'Structure model' 1 1 2022-05-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_unobs_or_zero_occ_atoms # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 60.3075 63.5616 4.6232 0.2755 0.2815 0.1342 0.0361 0.0088 -0.0308 3.6028 5.0135 3.4206 -2.1035 0.7157 -0.4906 0.2794 0.0127 -0.3199 0.5710 -0.2057 -0.2742 -0.1596 -0.0946 0.2012 'X-RAY DIFFRACTION' 2 ? refined 66.7956 67.2250 0.1495 0.3425 0.2981 0.3149 0.0215 0.0933 -0.0006 5.0246 7.1503 2.8662 -0.2427 3.5115 -1.1361 -0.0529 -0.0645 -0.0293 0.2870 0.3627 -0.6939 -0.2846 -0.6731 0.2824 'X-RAY DIFFRACTION' 3 ? refined 60.5893 64.4806 -7.6609 0.5945 0.3802 0.2954 0.0774 -0.0255 -0.0690 7.6437 2.5237 1.5155 0.9616 -1.2285 -1.9352 0.1798 0.3464 -0.3896 0.6782 -1.2268 -0.6980 -0.6993 1.0439 0.0304 'X-RAY DIFFRACTION' 4 ? refined 57.7236 66.3389 8.2508 0.3658 0.2497 0.1888 0.0483 -0.0003 -0.0180 2.4598 2.4536 1.6347 -1.1520 -0.5459 -0.9295 -0.0297 -0.0304 0.0544 -0.1022 0.3080 0.0834 0.0682 -0.0743 0.0191 'X-RAY DIFFRACTION' 5 ? refined 50.5043 65.2593 10.1370 0.2052 0.3388 0.2921 0.0728 0.0232 -0.0262 3.4733 7.6579 7.6819 -1.8584 4.3603 0.2999 0.1110 0.1496 -0.1101 0.1939 0.1006 0.6899 0.3872 -0.4816 -0.2231 'X-RAY DIFFRACTION' 6 ? refined 51.3095 60.2433 4.2101 0.3020 0.2635 0.1185 0.0665 0.0055 0.0062 7.6644 2.0032 2.4283 2.9086 3.3312 -1.7073 0.0589 0.0726 -0.3746 0.0233 0.2878 0.9293 -0.1429 0.3170 -0.3032 'X-RAY DIFFRACTION' 7 ? refined 64.3123 59.0005 13.9613 0.4393 0.3093 0.1840 0.0862 -0.0703 -0.0402 0.9047 2.4639 2.1993 1.3871 1.2846 2.3111 -0.1073 0.2555 0.0026 -0.2975 0.0900 -0.6137 1.0874 0.1557 0.1780 'X-RAY DIFFRACTION' 8 ? refined 56.0601 54.8576 16.4910 0.5757 0.3326 0.1748 0.0376 0.0664 0.0045 4.6265 4.1486 4.7666 4.0984 -4.0908 -4.3925 0.1385 -0.2840 -0.1037 -0.8711 -0.3559 0.0030 1.0915 0.9056 0.2499 'X-RAY DIFFRACTION' 9 ? refined 57.5392 53.6074 8.9756 0.3071 0.2720 0.1495 0.0199 0.0355 0.0081 5.2879 2.4494 1.0934 1.0716 0.2489 0.7232 -0.0012 0.0645 -0.0483 -0.1407 0.0454 0.2318 0.6384 0.0818 -0.0907 'X-RAY DIFFRACTION' 10 ? refined 67.3643 45.4395 10.8418 0.5004 0.2891 0.2065 0.0312 -0.0901 -0.0100 2.9333 3.2757 3.3472 3.0167 1.6568 1.0936 -0.0610 0.1431 -0.1428 -0.0747 -0.3324 -0.6997 0.7387 0.2377 0.1935 'X-RAY DIFFRACTION' 11 ? refined 64.0835 52.8863 0.2476 0.2780 0.2213 0.1403 0.0229 0.0005 -0.0253 4.3417 3.7758 4.6693 -0.7071 -0.4557 2.0400 0.0653 0.1172 -0.1643 0.0289 0.1728 -0.2427 -0.2121 -0.2130 0.0587 'X-RAY DIFFRACTION' 12 ? refined 52.5953 51.4909 -4.5054 0.2731 0.3312 0.2329 0.0420 -0.1361 -0.0312 4.0893 7.1818 5.4503 1.5291 1.8236 2.5028 0.0996 -0.2976 0.1422 0.6629 0.0737 0.6328 -0.1704 0.2052 -0.5221 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 2 A 10 '(chain A and resid 2:10)' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 11 A 19 '(chain A and resid 11:19)' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 20 A 24 '(chain A and resid 20:24)' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 25 A 39 '(chain A and resid 25:39)' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 40 A 44 '(chain A and resid 40:44)' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 45 A 49 '(chain A and resid 45:49)' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 50 A 61 '(chain A and resid 50:61)' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 62 A 67 '(chain A and resid 62:67)' ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 68 A 81 '(chain A and resid 68:81)' ? ? ? ? ? 'X-RAY DIFFRACTION' 10 10 A 82 A 91 '(chain A and resid 82:91)' ? ? ? ? ? 'X-RAY DIFFRACTION' 11 11 A 92 A 112 '(chain A and resid 92:112)' ? ? ? ? ? 'X-RAY DIFFRACTION' 12 12 A 113 A 118 '(chain A and resid 113:118)' ? ? ? ? ? # _pdbx_phasing_MR.entry_id 6EB7 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 4.450 _pdbx_phasing_MR.d_res_low_rotation 29.210 _pdbx_phasing_MR.d_res_high_translation 4.450 _pdbx_phasing_MR.d_res_low_translation 29.210 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.13_2998 1 ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 2 ? 'data scaling' ? ? 'Phil Evans' ? ? ? ? ? ? http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? Aimless ? ? program . 3 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk 'Sat Dec 23 23:37:16 2017 (svn 8297) (git 7323, 4bfedeb... )' ? ? ? ? http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program 2.8.1 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Sep. 1, 2017' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.24 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NH1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 106 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 301 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.03 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 92 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NH2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ARG _pdbx_validate_symm_contact.auth_seq_id_2 106 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_565 _pdbx_validate_symm_contact.dist 2.04 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 57 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 69.48 _pdbx_validate_torsion.psi -67.21 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 ILE A 6 ? B 10.35 2 1 LEU A 108 ? A 11.94 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 118 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.224 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 398 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.25 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ILE 6 ? N B A ILE 5 N 2 1 Y 0 A ILE 6 ? CA B A ILE 5 CA 3 1 Y 0 A ILE 6 ? C B A ILE 5 C 4 1 Y 0 A ILE 6 ? O B A ILE 5 O 5 1 Y 0 A ILE 6 ? CB B A ILE 5 CB 6 1 Y 0 A ILE 6 ? CG1 B A ILE 5 CG1 7 1 Y 0 A ILE 6 ? CG2 B A ILE 5 CG2 8 1 Y 0 A ILE 6 ? CD1 B A ILE 5 CD1 9 1 Y 0 A LEU 108 ? N A A LEU 107 N 10 1 Y 0 A LEU 108 ? CA A A LEU 107 CA 11 1 Y 0 A LEU 108 ? C A A LEU 107 C 12 1 Y 0 A LEU 108 ? O A A LEU 107 O 13 1 Y 0 A LEU 108 ? CB A A LEU 107 CB 14 1 Y 0 A LEU 108 ? CG A A LEU 107 CG 15 1 Y 0 A LEU 108 ? CD1 A A LEU 107 CD1 16 1 Y 0 A LEU 108 ? CD2 A A LEU 107 CD2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BERYLLIUM TRIFLUORIDE ION' BEF 3 'MANGANESE (II) ION' MN 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'equilibrium centrifugation' _pdbx_struct_assembly_auth_evidence.details ? #