HEADER SIGNALING PROTEIN 05-AUG-18 6EB7 TITLE YYCF HOMOLOGUE (SP1227) RECEIVER DOMAIN ACTIVATED BY BEF3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING RESPONSE REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE SEROTYPE 4 (STRAIN SOURCE 3 ATCC BAA-334 / TIGR4); SOURCE 4 ORGANISM_TAXID: 170187; SOURCE 5 STRAIN: ATCC BAA-334 / TIGR4; SOURCE 6 GENE: SP_1227; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BEF3 ACTIVATED, YYCF HOMOLOGUE, RESPONSE REGULATOR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.RIBOLDI-TUNNICLIFFE,N.W.ISSACS REVDAT 2 04-MAY-22 6EB7 1 REMARK REVDAT 1 13-NOV-19 6EB7 0 JRNL AUTH A.RIBOLDI-TUNNICLIFFE JRNL TITL YYCF HOMOLOGUE (SP1227) RECEIVER DOMAIN ACTIVATED BY BEF3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 17699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2146 - 3.0215 0.92 2413 119 0.1631 0.1772 REMARK 3 2 3.0215 - 2.3986 0.97 2419 123 0.1766 0.1975 REMARK 3 3 2.3986 - 2.0955 0.98 2433 128 0.1714 0.1782 REMARK 3 4 2.0955 - 1.9040 0.98 2406 130 0.2067 0.2491 REMARK 3 5 1.9040 - 1.7675 0.98 2378 144 0.2690 0.2856 REMARK 3 6 1.7675 - 1.6633 0.97 2390 128 0.3232 0.3319 REMARK 3 7 1.6633 - 1.5800 0.97 2349 139 0.3747 0.3885 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:10) REMARK 3 ORIGIN FOR THE GROUP (A): 60.3075 63.5616 4.6232 REMARK 3 T TENSOR REMARK 3 T11: 0.2755 T22: 0.2815 REMARK 3 T33: 0.1342 T12: 0.0361 REMARK 3 T13: 0.0088 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 3.6028 L22: 5.0135 REMARK 3 L33: 3.4206 L12: -2.1035 REMARK 3 L13: 0.7157 L23: -0.4906 REMARK 3 S TENSOR REMARK 3 S11: 0.2794 S12: 0.5710 S13: -0.2057 REMARK 3 S21: -0.1596 S22: 0.0127 S23: -0.2742 REMARK 3 S31: -0.0946 S32: 0.2012 S33: -0.3199 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 11:19) REMARK 3 ORIGIN FOR THE GROUP (A): 66.7956 67.2250 0.1495 REMARK 3 T TENSOR REMARK 3 T11: 0.3425 T22: 0.2981 REMARK 3 T33: 0.3149 T12: 0.0215 REMARK 3 T13: 0.0933 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 5.0246 L22: 7.1503 REMARK 3 L33: 2.8662 L12: -0.2427 REMARK 3 L13: 3.5115 L23: -1.1361 REMARK 3 S TENSOR REMARK 3 S11: -0.0529 S12: 0.2870 S13: 0.3627 REMARK 3 S21: -0.2846 S22: -0.0645 S23: -0.6939 REMARK 3 S31: -0.6731 S32: 0.2824 S33: -0.0293 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 20:24) REMARK 3 ORIGIN FOR THE GROUP (A): 60.5893 64.4806 -7.6609 REMARK 3 T TENSOR REMARK 3 T11: 0.5945 T22: 0.3802 REMARK 3 T33: 0.2954 T12: 0.0774 REMARK 3 T13: -0.0255 T23: -0.0690 REMARK 3 L TENSOR REMARK 3 L11: 7.6437 L22: 2.5237 REMARK 3 L33: 1.5155 L12: 0.9616 REMARK 3 L13: -1.2285 L23: -1.9352 REMARK 3 S TENSOR REMARK 3 S11: 0.1798 S12: 0.6782 S13: -1.2268 REMARK 3 S21: -0.6993 S22: 0.3464 S23: -0.6980 REMARK 3 S31: 1.0439 S32: 0.0304 S33: -0.3896 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 25:39) REMARK 3 ORIGIN FOR THE GROUP (A): 57.7236 66.3389 8.2508 REMARK 3 T TENSOR REMARK 3 T11: 0.3658 T22: 0.2497 REMARK 3 T33: 0.1888 T12: 0.0483 REMARK 3 T13: -0.0003 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 2.4598 L22: 2.4536 REMARK 3 L33: 1.6347 L12: -1.1520 REMARK 3 L13: -0.5459 L23: -0.9295 REMARK 3 S TENSOR REMARK 3 S11: -0.0297 S12: -0.1022 S13: 0.3080 REMARK 3 S21: 0.0682 S22: -0.0304 S23: 0.0834 REMARK 3 S31: -0.0743 S32: 0.0191 S33: 0.0544 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 40:44) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5043 65.2593 10.1370 REMARK 3 T TENSOR REMARK 3 T11: 0.2052 T22: 0.3388 REMARK 3 T33: 0.2921 T12: 0.0728 REMARK 3 T13: 0.0232 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 3.4733 L22: 7.6579 REMARK 3 L33: 7.6819 L12: -1.8584 REMARK 3 L13: 4.3603 L23: 0.2999 REMARK 3 S TENSOR REMARK 3 S11: 0.1110 S12: 0.1939 S13: 0.1006 REMARK 3 S21: 0.3872 S22: 0.1496 S23: 0.6899 REMARK 3 S31: -0.4816 S32: -0.2231 S33: -0.1101 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 45:49) REMARK 3 ORIGIN FOR THE GROUP (A): 51.3095 60.2433 4.2101 REMARK 3 T TENSOR REMARK 3 T11: 0.3020 T22: 0.2635 REMARK 3 T33: 0.1185 T12: 0.0665 REMARK 3 T13: 0.0055 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 7.6644 L22: 2.0032 REMARK 3 L33: 2.4283 L12: 2.9086 REMARK 3 L13: 3.3312 L23: -1.7073 REMARK 3 S TENSOR REMARK 3 S11: 0.0589 S12: 0.0233 S13: 0.2878 REMARK 3 S21: -0.1429 S22: 0.0726 S23: 0.9293 REMARK 3 S31: 0.3170 S32: -0.3032 S33: -0.3746 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 50:61) REMARK 3 ORIGIN FOR THE GROUP (A): 64.3123 59.0005 13.9613 REMARK 3 T TENSOR REMARK 3 T11: 0.4393 T22: 0.3093 REMARK 3 T33: 0.1840 T12: 0.0862 REMARK 3 T13: -0.0703 T23: -0.0402 REMARK 3 L TENSOR REMARK 3 L11: 0.9047 L22: 2.4639 REMARK 3 L33: 2.1993 L12: 1.3871 REMARK 3 L13: 1.2846 L23: 2.3111 REMARK 3 S TENSOR REMARK 3 S11: -0.1073 S12: -0.2975 S13: 0.0900 REMARK 3 S21: 1.0874 S22: 0.2555 S23: -0.6137 REMARK 3 S31: 0.1557 S32: 0.1780 S33: 0.0026 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 62:67) REMARK 3 ORIGIN FOR THE GROUP (A): 56.0601 54.8576 16.4910 REMARK 3 T TENSOR REMARK 3 T11: 0.5757 T22: 0.3326 REMARK 3 T33: 0.1748 T12: 0.0376 REMARK 3 T13: 0.0664 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 4.6265 L22: 4.1486 REMARK 3 L33: 4.7666 L12: 4.0984 REMARK 3 L13: -4.0908 L23: -4.3925 REMARK 3 S TENSOR REMARK 3 S11: 0.1385 S12: -0.8711 S13: -0.3559 REMARK 3 S21: 1.0915 S22: -0.2840 S23: 0.0030 REMARK 3 S31: 0.9056 S32: 0.2499 S33: -0.1037 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 68:81) REMARK 3 ORIGIN FOR THE GROUP (A): 57.5392 53.6074 8.9756 REMARK 3 T TENSOR REMARK 3 T11: 0.3071 T22: 0.2720 REMARK 3 T33: 0.1495 T12: 0.0199 REMARK 3 T13: 0.0355 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 5.2879 L22: 2.4494 REMARK 3 L33: 1.0934 L12: 1.0716 REMARK 3 L13: 0.2489 L23: 0.7232 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: -0.1407 S13: 0.0454 REMARK 3 S21: 0.6384 S22: 0.0645 S23: 0.2318 REMARK 3 S31: 0.0818 S32: -0.0907 S33: -0.0483 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 82:91) REMARK 3 ORIGIN FOR THE GROUP (A): 67.3643 45.4395 10.8418 REMARK 3 T TENSOR REMARK 3 T11: 0.5004 T22: 0.2891 REMARK 3 T33: 0.2065 T12: 0.0312 REMARK 3 T13: -0.0901 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.9333 L22: 3.2757 REMARK 3 L33: 3.3472 L12: 3.0167 REMARK 3 L13: 1.6568 L23: 1.0936 REMARK 3 S TENSOR REMARK 3 S11: -0.0610 S12: -0.0747 S13: -0.3324 REMARK 3 S21: 0.7387 S22: 0.1431 S23: -0.6997 REMARK 3 S31: 0.2377 S32: 0.1935 S33: -0.1428 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 92:112) REMARK 3 ORIGIN FOR THE GROUP (A): 64.0835 52.8863 0.2476 REMARK 3 T TENSOR REMARK 3 T11: 0.2780 T22: 0.2213 REMARK 3 T33: 0.1403 T12: 0.0229 REMARK 3 T13: 0.0005 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 4.3417 L22: 3.7758 REMARK 3 L33: 4.6693 L12: -0.7071 REMARK 3 L13: -0.4557 L23: 2.0400 REMARK 3 S TENSOR REMARK 3 S11: 0.0653 S12: 0.0289 S13: 0.1728 REMARK 3 S21: -0.2121 S22: 0.1172 S23: -0.2427 REMARK 3 S31: -0.2130 S32: 0.0587 S33: -0.1643 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 113:118) REMARK 3 ORIGIN FOR THE GROUP (A): 52.5953 51.4909 -4.5054 REMARK 3 T TENSOR REMARK 3 T11: 0.2731 T22: 0.3312 REMARK 3 T33: 0.2329 T12: 0.0420 REMARK 3 T13: -0.1361 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 4.0893 L22: 7.1818 REMARK 3 L33: 5.4503 L12: 1.5291 REMARK 3 L13: 1.8236 L23: 2.5028 REMARK 3 S TENSOR REMARK 3 S11: 0.0996 S12: 0.6629 S13: 0.0737 REMARK 3 S21: -0.1704 S22: -0.2976 S23: 0.6328 REMARK 3 S31: 0.2052 S32: -0.5221 S33: 0.1422 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EB7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000235990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 - 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17717 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 29.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 36% V/V PEG 300, 5% W/V PEG 1,000 100 REMARK 280 MM SODIUM ACETATE PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.72800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 18.72800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.28150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.66200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.28150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.66200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.72800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.28150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.66200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 18.72800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.28150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.66200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 372 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 6 N CA C O CB CG1 CG2 REMARK 480 ILE A 6 CD1 REMARK 480 LEU A 108 N CA C O CB CG CD1 REMARK 480 LEU A 108 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 106 O HOH A 301 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 92 NH2 ARG A 106 4565 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 57 -67.21 69.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 118 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 6 10.35 REMARK 500 LEU A 108 11.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 398 DISTANCE = 6.25 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD1 REMARK 620 2 ASP A 52 OD2 89.1 REMARK 620 3 MET A 54 O 87.8 92.2 REMARK 620 4 BEF A 201 F2 171.9 82.9 92.0 REMARK 620 5 HOH A 306 O 91.3 90.7 176.9 89.2 REMARK 620 6 HOH A 347 O 89.3 176.6 90.7 98.8 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 201 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 52 OD1 REMARK 620 2 BEF A 201 F1 112.6 REMARK 620 3 BEF A 201 F2 108.9 107.7 REMARK 620 4 BEF A 201 F3 113.0 109.0 105.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6EBB RELATED DB: PDB DBREF1 6EB7 A 2 118 UNP A0A0H2UQ68_STRPN DBREF2 6EB7 A A0A0H2UQ68 2 118 SEQRES 1 A 117 LYS LYS ILE LEU ILE VAL ASP ASP GLU LYS PRO ILE SER SEQRES 2 A 117 ASP ILE ILE LYS PHE ASN MET THR LYS GLU GLY TYR GLU SEQRES 3 A 117 VAL VAL THR ALA PHE ASN GLY ARG GLU ALA LEU GLU GLN SEQRES 4 A 117 PHE GLU ALA GLU GLN PRO ASP ILE ILE ILE LEU ASP LEU SEQRES 5 A 117 MET LEU PRO GLU ILE ASP GLY LEU GLU VAL ALA LYS THR SEQRES 6 A 117 ILE ARG LYS THR SER SER VAL PRO ILE LEU MET LEU SER SEQRES 7 A 117 ALA LYS ASP SER GLU PHE ASP LYS VAL ILE GLY LEU GLU SEQRES 8 A 117 LEU GLY ALA ASP ASP TYR VAL THR LYS PRO PHE SER ASN SEQRES 9 A 117 ARG GLU LEU GLN ALA ARG VAL LYS ALA LEU LEU ARG ARG HET BEF A 201 4 HET MN A 202 1 HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM MN MANGANESE (II) ION FORMUL 2 BEF BE F3 1- FORMUL 3 MN MN 2+ FORMUL 4 HOH *98(H2 O) HELIX 1 AA1 GLU A 10 GLU A 24 1 15 HELIX 2 AA2 ASN A 33 GLN A 45 1 13 HELIX 3 AA3 ASP A 59 LYS A 69 1 11 HELIX 4 AA4 SER A 83 LEU A 93 1 11 HELIX 5 AA5 SER A 104 ARG A 118 1 15 SHEET 1 AA1 5 GLU A 27 ALA A 31 0 SHEET 2 AA1 5 LYS A 3 VAL A 7 1 N ILE A 4 O GLU A 27 SHEET 3 AA1 5 ILE A 48 LEU A 51 1 O ILE A 50 N VAL A 7 SHEET 4 AA1 5 ILE A 75 SER A 79 1 O LEU A 76 N ILE A 49 SHEET 5 AA1 5 ASP A 97 THR A 100 1 O VAL A 99 N MET A 77 LINK OD1 ASP A 9 MN MN A 202 1555 1555 2.13 LINK OD1 ASP A 52 BE BEF A 201 1555 1555 1.44 LINK OD2 ASP A 52 MN MN A 202 1555 1555 2.05 LINK O MET A 54 MN MN A 202 1555 1555 2.17 LINK F2 BEF A 201 MN MN A 202 1555 1555 2.05 LINK MN MN A 202 O HOH A 306 1555 1555 2.25 LINK MN MN A 202 O HOH A 347 1555 1555 2.23 CISPEP 1 LYS A 101 PRO A 102 0 2.21 SITE 1 AC1 9 ASP A 52 LEU A 53 MET A 54 SER A 79 SITE 2 AC1 9 ALA A 80 LYS A 101 MN A 202 HOH A 306 SITE 3 AC1 9 HOH A 368 SITE 1 AC2 6 ASP A 9 ASP A 52 MET A 54 BEF A 201 SITE 2 AC2 6 HOH A 306 HOH A 347 CRYST1 74.563 93.324 37.456 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013411 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010715 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026698 0.00000