HEADER BIOSYNTHETIC PROTEIN 07-AUG-18 6EC8 TITLE GLUTAMYLATION DOMAIN, TBTB, FROM THIOMURACIN BIOSYNTHESIS BOUND TO 5'- TITLE 2 PHOSPHODESMETHYLGLUTAMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LANTIBIOTIC DEHYDRATASE DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBISPORA BISPORA (STRAIN ATCC 19993 / DSM SOURCE 3 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51); SOURCE 4 ORGANISM_TAXID: 469371; SOURCE 5 STRAIN: ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 SOURCE 6 / R51; SOURCE 7 VARIANT: ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC SOURCE 8 14880 / R51; SOURCE 9 ATCC: 19993; SOURCE 10 GENE: TBIS_0550; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS RIPP, THIOPEPTIDE, THIOMURACIN, TRNA-DEPENDENT, GLUTAMYLATION, KEYWDS 2 DEHYDRATASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.P.COGAN,S.K.NAIR REVDAT 3 11-OCT-23 6EC8 1 REMARK REVDAT 2 25-SEP-19 6EC8 1 JRNL REVDAT 1 19-JUN-19 6EC8 0 JRNL AUTH I.R.BOTHWELL,D.P.COGAN,T.KIM,C.J.REINHARDT,W.A.VAN DER DONK, JRNL AUTH 2 S.K.NAIR JRNL TITL CHARACTERIZATION OF GLUTAMYL-TRNA-DEPENDENT DEHYDRATASES JRNL TITL 2 USING NONREACTIVE SUBSTRATE MIMICS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 17245 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31409709 JRNL DOI 10.1073/PNAS.1905240116 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 45754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2430 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3336 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6295 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.85000 REMARK 3 B22 (A**2) : -1.77000 REMARK 3 B33 (A**2) : -2.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.75000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.272 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.211 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.535 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6479 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6276 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8816 ; 1.824 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14389 ; 1.073 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 799 ; 8.014 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 289 ;29.978 ;20.796 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1040 ;16.889 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 98 ;19.557 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 979 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7177 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1436 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3208 ; 4.090 ; 4.699 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3207 ; 4.086 ; 4.699 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4003 ; 6.264 ; 7.035 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4004 ; 6.264 ; 7.035 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3271 ; 4.104 ; 5.125 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3272 ; 4.103 ; 5.124 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4814 ; 6.336 ; 7.509 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7233 ; 9.484 ;56.511 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7195 ; 9.482 ;56.420 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EC8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48184 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.148 REMARK 200 RESOLUTION RANGE LOW (A) : 96.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.72700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6EC7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 15% PEG, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.04900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 LEU A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 5 REMARK 465 ARG A 6 REMARK 465 ARG A 7 REMARK 465 PHE A 8 REMARK 465 PRO A 9 REMARK 465 VAL A 10 REMARK 465 ALA A 11 REMARK 465 MET A 12 REMARK 465 THR A 13 REMARK 465 SER A 14 REMARK 465 THR A 15 REMARK 465 ALA A 16 REMARK 465 ASP A 73 REMARK 465 GLY A 74 REMARK 465 ASP A 75 REMARK 465 ASP A 76 REMARK 465 GLY A 77 REMARK 465 LEU A 78 REMARK 465 ARG A 79 REMARK 465 LEU A 709 REMARK 465 HIS A 710 REMARK 465 PRO A 711 REMARK 465 SER A 712 REMARK 465 ALA A 713 REMARK 465 PRO A 714 REMARK 465 PRO A 715 REMARK 465 LEU A 716 REMARK 465 LEU A 717 REMARK 465 ARG A 718 REMARK 465 ILE A 719 REMARK 465 GLY A 720 REMARK 465 GLU A 721 REMARK 465 VAL A 722 REMARK 465 PRO A 723 REMARK 465 PRO A 724 REMARK 465 ALA A 786 REMARK 465 TRP A 787 REMARK 465 GLN A 788 REMARK 465 GLU A 789 REMARK 465 ARG A 790 REMARK 465 MET A 791 REMARK 465 VAL A 792 REMARK 465 GLN A 793 REMARK 465 ALA A 794 REMARK 465 GLY A 795 REMARK 465 GLN A 796 REMARK 465 ASP A 797 REMARK 465 LYS A 798 REMARK 465 ALA A 799 REMARK 465 ARG A 800 REMARK 465 GLU A 858 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 708 CG CD1 CD2 REMARK 470 GLN A 726 CG CD OE1 NE2 REMARK 470 GLU A 727 CG CD OE1 OE2 REMARK 470 LYS A 801 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 218 O GLY A 219 1.03 REMARK 500 O SER A 206 N PHE A 208 1.30 REMARK 500 OD2 ASP A 224 NH2 ARG A 229 2.05 REMARK 500 CG2 THR A 633 O TYR A 635 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 360 C - N - CA ANGL. DEV. = 19.2 DEGREES REMARK 500 PRO A 360 C - N - CD ANGL. DEV. = -20.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 81 -62.39 78.40 REMARK 500 ASP A 154 127.29 -38.86 REMARK 500 SER A 165 75.49 -151.78 REMARK 500 ARG A 181 69.01 -114.21 REMARK 500 ARG A 182 102.44 -57.10 REMARK 500 THR A 202 58.07 -94.25 REMARK 500 TYR A 205 -8.28 -140.92 REMARK 500 SER A 206 153.50 128.94 REMARK 500 THR A 207 -6.86 -0.04 REMARK 500 ASN A 218 81.59 -15.32 REMARK 500 GLU A 220 -56.84 56.93 REMARK 500 ASP A 221 49.34 -82.30 REMARK 500 TRP A 222 34.33 -146.94 REMARK 500 ASP A 224 -75.94 -38.55 REMARK 500 ARG A 275 39.02 -94.16 REMARK 500 ASP A 277 -51.96 -168.62 REMARK 500 GLU A 288 78.37 -114.85 REMARK 500 ASP A 317 108.61 -47.36 REMARK 500 ARG A 327 36.75 -98.59 REMARK 500 ASP A 328 -44.89 -135.59 REMARK 500 GLU A 332 93.92 -7.23 REMARK 500 ARG A 356 -88.44 -40.49 REMARK 500 PRO A 360 -57.39 -5.15 REMARK 500 GLU A 361 22.69 166.27 REMARK 500 HIS A 374 112.42 -39.47 REMARK 500 HIS A 377 136.38 -31.14 REMARK 500 MET A 398 -46.71 -170.23 REMARK 500 ALA A 406 109.22 66.56 REMARK 500 SER A 497 139.50 149.54 REMARK 500 ALA A 499 -166.11 174.15 REMARK 500 TRP A 501 -82.44 -119.27 REMARK 500 PRO A 503 100.85 -47.39 REMARK 500 ALA A 506 -55.59 85.04 REMARK 500 HIS A 507 40.95 -105.83 REMARK 500 ASP A 602 86.24 -69.76 REMARK 500 VAL A 630 107.53 -51.53 REMARK 500 PRO A 640 -81.61 -32.23 REMARK 500 PHE A 641 48.57 -105.23 REMARK 500 GLN A 726 -7.25 91.23 REMARK 500 ARG A 738 -20.17 78.64 REMARK 500 ALA A 750 -64.53 -16.95 REMARK 500 ASP A 762 -54.40 -140.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J4G A 901 DBREF 6EC8 A 1 858 UNP D6Y502 D6Y502_THEBD 1 858 SEQADV 6EC8 SER A -2 UNP D6Y502 EXPRESSION TAG SEQADV 6EC8 GLY A -1 UNP D6Y502 EXPRESSION TAG SEQADV 6EC8 SER A 0 UNP D6Y502 EXPRESSION TAG SEQRES 1 A 861 SER GLY SER MET ARG LEU VAL GLU ARG ARG PHE PRO VAL SEQRES 2 A 861 ALA MET THR SER THR ALA PRO LYS VAL ALA VAL ARG GLU SEQRES 3 A 861 CYS GLY LEU PRO VAL SER ALA ILE GLU SER LEU CYS CYS SEQRES 4 A 861 THR ASP SER PHE ALA LEU ILE ARG ARG GLN VAL ARG GLU SEQRES 5 A 861 THR ALA TRP LEU LYS GLY GLU GLY LYS ARG LEU ALA VAL SEQRES 6 A 861 ASP LEU GLY LEU LEU ILE GLY GLU ARG GLY ASP GLY ASP SEQRES 7 A 861 ASP GLY LEU ARG PRO VAL LEU VAL GLY LEU ARG ARG ALA SEQRES 8 A 861 LEU HIS THR GLY ARG LEU PRO ASP ALA ARG GLU TRP THR SEQRES 9 A 861 PRO ARG VAL ALA SER ALA LEU PRO ALA GLU LEU ALA ALA SEQRES 10 A 861 ARG VAL ALA ASP TRP VAL THR ARG MET ARG ALA LEU THR SEQRES 11 A 861 ARG ALA ARG ARG GLU LEU PRO GLU LEU PHE ALA ALA GLU SEQRES 12 A 861 ALA ARG VAL LYS GLU LYS VAL LEU ALA GLN VAL ALA ALA SEQRES 13 A 861 ASP PRO GLY PHE ARG ARG ALA LEU SER LEU ALA SER PRO SEQRES 14 A 861 GLU LEU ALA ALA ASP LEU ASP ARG TRP LEU ALA GLU PRO SEQRES 15 A 861 ALA ARG ARG PRO LYS THR GLN LYS LEU LEU ARG LEU ALA SEQRES 16 A 861 LYS TYR VAL ALA ARG ALA ALA VAL LYS THR SER PRO TYR SEQRES 17 A 861 SER THR PHE THR SER MET GLY VAL ALA VAL TRP GLU ASN SEQRES 18 A 861 GLY GLU ASP TRP ALA ASP GLY ALA ILE VAL ARG PHE ALA SEQRES 19 A 861 PRO ARG GLU PRO PRO SER VAL ILE LEU GLU PRO SER GLY SEQRES 20 A 861 GLU TRP LEU HIS GLY ALA LEU ARG ALA TRP LEU ALA ARG SEQRES 21 A 861 PRO GLU ASN LEU VAL ARG SER ARG LEU ARG LEU ASN PRO SEQRES 22 A 861 SER LEU VAL ILE ARG ALA ASP LYS ALA GLU PHE LEU GLY SEQRES 23 A 861 PHE PRO PRO ARG GLU PRO ILE ILE ARG MET GLY LEU THR SEQRES 24 A 861 PRO VAL VAL ALA THR VAL LEU ARG LEU ALA GLU PRO ALA SEQRES 25 A 861 ALA ASP ALA ASP GLY TRP ILE ASP PRO MET GLY PHE ARG SEQRES 26 A 861 ASP ARG LEU ALA ARG ASP LEU PRO ALA GLU PRO GLU GLN SEQRES 27 A 861 VAL ASP ARG LEU LEU ARG SER LEU ILE GLU ALA GLY VAL SEQRES 28 A 861 LEU GLU ALA HIS PRO LEU THR ARG ALA GLY LEU PRO GLU SEQRES 29 A 861 THR GLY GLU TRP ALA GLU ILE ARG ALA ALA LEU ARG HIS SEQRES 30 A 861 ASP PRO HIS GLY GLU ASP PRO GLU ALA TYR ARG VAL ARG SEQRES 31 A 861 LEU ALA ARG LEU LYS ARG ALA MET THR MET MET TRP PRO SEQRES 32 A 861 GLN GLY ASP THR THR ALA LEU LEU HIS GLU THR ALA VAL SEQRES 33 A 861 VAL THR ARG PRO VAL ALA SER LEU ASN PRO THR ALA TRP SEQRES 34 A 861 GLY ARG GLY LEU SER ASP LEU ASP VAL VAL ARG ARG TRP SEQRES 35 A 861 LEU SER VAL PHE ASP GLY LYS LEU PRO ILE ARG ILE VAL SEQRES 36 A 861 VAL ALA GLU TYR LEU ARG ALA ARG TYR GLY GLU HIS ALA SEQRES 37 A 861 ARG VAL PRO PHE LEU THR PHE HIS ARG HIS VAL GLN GLU SEQRES 38 A 861 GLU ILE ALA GLY ASP ALA PRO SER GLY ALA ASP LEU ARG SEQRES 39 A 861 THR PHE VAL GLY ARG SER ALA ALA ILE TRP ALA PRO PRO SEQRES 40 A 861 LEU ALA HIS SER ARG LEU PRO ARG LEU ARG GLU LEU ALA SEQRES 41 A 861 LYS LEU ARG GLU ALA ALA ARG GLU LEU ALA LEU GLY ARG SEQRES 42 A 861 PRO GLU HIS ASP GLY ILE GLN ARG VAL ASP PRO GLU GLU SEQRES 43 A 861 LEU ILE LYS GLN MET ALA THR TRP PRO GLU TRP ILE VAL SEQRES 44 A 861 VAL PRO ARG SER CYS ALA CYS TYR VAL GLN PRO ALA PRO SEQRES 45 A 861 GLU GLY ARG LEU VAL LEU ASN VAL VAL HIS GLY GLY HIS SEQRES 46 A 861 GLY ARG GLY LEU ARG ARG LEU SER HIS LEU ILE GLY ARG SEQRES 47 A 861 VAL ARG GLY GLU ALA VAL ASP HIS PRO MET VAL ALA ASP SEQRES 48 A 861 GLU PRO GLU GLY THR VAL TYR ALA GLU LEU SER GLY SER SEQRES 49 A 861 LEU GLY SER THR LEU ASN VAL HIS VAL PRO GLY THR ARG SEQRES 50 A 861 TYR GLU ILE ASP TYR PRO PHE SER PRO GLY ASP ARG SER SEQRES 51 A 861 ARG ASP ARG ARG LEU PRO LEU SER ASP LEU GLU VAL VAL SEQRES 52 A 861 LEU ALA PRO GLU THR GLY LEU ALA GLU LEU ARG SER ARG SEQRES 53 A 861 ARG LEU GLY PHE ARG VAL ILE PRO LEU HIS LEU GLY MET SEQRES 54 A 861 ALA ALA GLU PHE GLN LEU PRO PRO ALA ALA ARG PHE LEU SEQRES 55 A 861 GLU ARG ALA PHE GLY VAL THR TYR LEU LEU HIS PRO SER SEQRES 56 A 861 ALA PRO PRO LEU LEU ARG ILE GLY GLU VAL PRO PRO PRO SEQRES 57 A 861 GLN GLU VAL THR ARG TYR PRO ARG VAL GLU VAL GLY ARG SEQRES 58 A 861 VAL VAL VAL GLN ARG ARG ARG TRP LEU ALA PRO ALA GLY SEQRES 59 A 861 THR LEU PRO ILE ARG ALA LYS GLY GLU ASP ASP ALA SER SEQRES 60 A 861 TYR LEU LEU ARG LEU VAL ALA TRP THR ASP ALA ASN GLY SEQRES 61 A 861 ILE PRO THR ARG SER PHE VAL ARG ALA TRP GLN GLU ARG SEQRES 62 A 861 MET VAL GLN ALA GLY GLN ASP LYS ALA ARG LYS PRO LEU SEQRES 63 A 861 PHE LEU ASP LEU ALA ASN PRO PHE LEU VAL LYS VAL PHE SEQRES 64 A 861 GLU ARG GLN ILE ARG ASP CYS ALA PHE VAL LEU PHE GLU SEQRES 65 A 861 GLU ALA LEU PRO ASP PRO ALA ASP ALA PRO PRO ARG GLU SEQRES 66 A 861 GLY SER ASP LEU PRO ARG VAL ILE GLU PHE LEU VAL GLU SEQRES 67 A 861 LEU GLY GLU HET J4G A 901 64 HETNAM J4G 3'-DEOXY-3'-[(L-ALPHA-GLUTAMYL)AMINO]ADENOSINE 5'- HETNAM 2 J4G (DIHYDROGEN PHOSPHATE) FORMUL 2 J4G C15 H22 N7 O9 P FORMUL 3 HOH *256(H2 O) HELIX 1 AA1 PRO A 27 SER A 33 1 7 HELIX 2 AA2 CYS A 36 GLU A 70 1 35 HELIX 3 AA3 VAL A 81 GLY A 92 1 12 HELIX 4 AA4 THR A 101 LEU A 108 1 8 HELIX 5 AA5 PRO A 109 ALA A 153 1 45 HELIX 6 AA6 ASP A 154 SER A 165 1 12 HELIX 7 AA7 SER A 165 GLU A 178 1 14 HELIX 8 AA8 LYS A 184 LYS A 201 1 18 HELIX 9 AA9 SER A 243 ALA A 256 1 14 HELIX 10 AB1 ARG A 257 LEU A 261 5 5 HELIX 11 AB2 THR A 296 ALA A 306 1 11 HELIX 12 AB3 ASP A 317 ARG A 327 1 11 HELIX 13 AB4 GLU A 332 ALA A 346 1 15 HELIX 14 AB5 THR A 362 HIS A 374 1 13 HELIX 15 AB6 ASP A 380 MET A 397 1 18 HELIX 16 AB7 GLY A 427 LEU A 440 1 14 HELIX 17 AB8 SER A 441 ASP A 444 5 4 HELIX 18 AB9 LYS A 446 GLY A 462 1 17 HELIX 19 AC1 PHE A 469 GLY A 482 1 14 HELIX 20 AC2 ALA A 484 SER A 486 5 3 HELIX 21 AC3 GLY A 487 GLY A 495 1 9 HELIX 22 AC4 LEU A 510 GLY A 529 1 20 HELIX 23 AC5 ASP A 540 THR A 550 1 11 HELIX 24 AC6 GLY A 585 GLY A 598 1 14 HELIX 25 AC7 SER A 624 VAL A 628 5 5 HELIX 26 AC8 SER A 647 ASP A 649 5 3 HELIX 27 AC9 ALA A 688 LEU A 692 5 5 HELIX 28 AD1 PRO A 693 GLY A 704 1 12 HELIX 29 AD2 GLY A 751 LEU A 753 5 3 HELIX 30 AD3 ALA A 763 ASN A 776 1 14 HELIX 31 AD4 ASN A 809 ILE A 820 1 12 HELIX 32 AD5 ASP A 834 ALA A 838 5 5 SHEET 1 AA110 VAL A 228 PHE A 230 0 SHEET 2 AA110 ALA A 419 LEU A 421 -1 O SER A 420 N ARG A 229 SHEET 3 AA110 THR A 209 TRP A 216 1 N VAL A 215 O LEU A 421 SHEET 4 AA110 LYS A 18 CYS A 24 -1 N VAL A 19 O ALA A 214 SHEET 5 AA110 ILE A 850 LEU A 856 -1 O GLU A 851 N ARG A 22 SHEET 6 AA110 CYS A 561 ALA A 568 -1 N VAL A 565 O PHE A 852 SHEET 7 AA110 ARG A 572 GLY A 580 -1 O VAL A 574 N GLN A 566 SHEET 8 AA110 VAL A 739 GLN A 742 1 O VAL A 740 N LEU A 573 SHEET 9 AA110 ARG A 733 VAL A 736 -1 N VAL A 734 O GLN A 742 SHEET 10 AA110 ILE A 536 VAL A 539 1 N VAL A 539 O GLU A 735 SHEET 1 AA2 2 SER A 237 PRO A 242 0 SHEET 2 AA2 2 LEU A 408 VAL A 413 -1 O VAL A 413 N SER A 237 SHEET 1 AA3 2 SER A 264 LEU A 268 0 SHEET 2 AA3 2 LEU A 349 PRO A 353 -1 O GLU A 350 N ARG A 267 SHEET 1 AA4 3 VAL A 273 ILE A 274 0 SHEET 2 AA4 3 LYS A 278 LEU A 282 -1 O GLU A 280 N VAL A 273 SHEET 3 AA4 3 ILE A 290 GLY A 294 -1 O ILE A 291 N PHE A 281 SHEET 1 AA5 7 ARG A 466 PRO A 468 0 SHEET 2 AA5 7 LEU A 657 LEU A 661 -1 O VAL A 659 N VAL A 467 SHEET 3 AA5 7 ALA A 668 SER A 672 -1 O ARG A 671 N GLU A 658 SHEET 4 AA5 7 ARG A 678 LEU A 682 -1 O VAL A 679 N LEU A 670 SHEET 5 AA5 7 THR A 613 LEU A 618 1 N VAL A 614 O ILE A 680 SHEET 6 AA5 7 TYR A 635 ASP A 638 1 O ILE A 637 N GLU A 617 SHEET 7 AA5 7 ARG A 651 PRO A 653 1 O LEU A 652 N GLU A 636 SHEET 1 AA6 5 THR A 729 TYR A 731 0 SHEET 2 AA6 5 ARG A 745 PRO A 749 -1 O LEU A 747 N THR A 729 SHEET 3 AA6 5 PHE A 825 GLU A 830 -1 O PHE A 828 N TRP A 746 SHEET 4 AA6 5 ARG A 781 VAL A 784 -1 N PHE A 783 O GLU A 829 SHEET 5 AA6 5 LEU A 803 ASP A 806 -1 O LEU A 805 N SER A 782 CISPEP 1 PRO A 285 PRO A 286 0 5.14 CISPEP 2 GLU A 609 PRO A 610 0 -7.94 CISPEP 3 LEU A 832 PRO A 833 0 -5.27 SITE 1 AC1 20 ARG A 22 ARG A 197 LYS A 201 THR A 202 SITE 2 AC1 20 SER A 203 PRO A 204 TYR A 564 GLN A 566 SITE 3 AC1 20 ASN A 576 ARG A 743 PHE A 783 LYS A 801 SITE 4 AC1 20 GLU A 829 GLU A 830 ALA A 831 LEU A 832 SITE 5 AC1 20 GLU A 851 HOH A1085 HOH A1093 HOH A1120 CRYST1 44.503 96.098 107.128 90.00 98.84 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022470 0.000000 0.003493 0.00000 SCALE2 0.000000 0.010406 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009447 0.00000