HEADER HYDROLASE 07-AUG-18 6ECD TITLE VLM2 THIOESTERASE DOMAIN WITH GENETICALLY ENCODED 2,3-DIAMINOPROPIONIC TITLE 2 ACID BOUND WITH A TETRADEPSIPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VLM2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THIOESTERASE DOMAIN (UNP RESIDUES 2368-2655); COMPND 5 EC: 3.1.2.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TETRADEPSIPEPTIDE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES TSUSIMAENSIS; SOURCE 3 ORGANISM_TAXID: 285482; SOURCE 4 ATCC: 15141; SOURCE 5 GENE: VLM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS THIOESTERASE, THIOESTERASE DOMAIN, NRPS, NON-RIBOSOMAL PEPTIDE KEYWDS 2 SYNTHETASE, NONRIBOSOMAL PEPTIDE SYNTHETASE, VALINOMYCIN, HYDROLASE, KEYWDS 3 DEPSIPEPTIDE, UNNATURAL AMINO ACID, 2, 3-DIAMINOPROPIONIC ACID EXPDTA X-RAY DIFFRACTION AUTHOR D.A.ALONZO,N.HUGUENIN-DEZOT,G.W.HEBERLIG,M.MAHESH,D.P.NGUYEN, AUTHOR 2 M.H.DORNAN,C.N.BODDY,J.W.CHIN,T.M.SCHMEING REVDAT 6 15-NOV-23 6ECD 1 REMARK REVDAT 5 11-OCT-23 6ECD 1 REMARK REVDAT 4 08-JAN-20 6ECD 1 REMARK REVDAT 3 16-JAN-19 6ECD 1 JRNL REVDAT 2 26-DEC-18 6ECD 1 JRNL REVDAT 1 12-DEC-18 6ECD 0 JRNL AUTH N.HUGUENIN-DEZOT,D.A.ALONZO,G.W.HEBERLIG,M.MAHESH, JRNL AUTH 2 D.P.NGUYEN,M.H.DORNAN,C.N.BODDY,T.M.SCHMEING,J.W.CHIN JRNL TITL TRAPPING BIOSYNTHETIC ACYL-ENZYME INTERMEDIATES WITH ENCODED JRNL TITL 2 2,3-DIAMINOPROPIONIC ACID. JRNL REF NATURE V. 565 112 2019 JRNL REFN ESSN 1476-4687 JRNL PMID 30542153 JRNL DOI 10.1038/S41586-018-0781-Z REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 107.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.530 REMARK 3 FREE R VALUE TEST SET COUNT : 2658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1107.8600 - 5.0700 1.00 2660 156 0.2116 0.2229 REMARK 3 2 5.0700 - 4.0200 1.00 2472 145 0.1488 0.1901 REMARK 3 3 4.0200 - 3.5200 1.00 2433 142 0.1587 0.2057 REMARK 3 4 3.5200 - 3.1900 1.00 2416 142 0.1813 0.1875 REMARK 3 5 3.1900 - 2.9600 1.00 2408 141 0.1943 0.2233 REMARK 3 6 2.9600 - 2.7900 1.00 2385 139 0.2224 0.2197 REMARK 3 7 2.7900 - 2.6500 1.00 2385 140 0.2151 0.2614 REMARK 3 8 2.6500 - 2.5400 1.00 2370 139 0.2033 0.2309 REMARK 3 9 2.5400 - 2.4400 1.00 2369 138 0.1930 0.1904 REMARK 3 10 2.4400 - 2.3500 1.00 2367 138 0.1863 0.2369 REMARK 3 11 2.3500 - 2.2800 1.00 2361 139 0.1850 0.1999 REMARK 3 12 2.2800 - 2.2100 1.00 2346 137 0.1826 0.1959 REMARK 3 13 2.2100 - 2.1600 1.00 2338 138 0.1819 0.2374 REMARK 3 14 2.1600 - 2.1000 1.00 2365 137 0.1818 0.2199 REMARK 3 15 2.1000 - 2.0600 1.00 2342 137 0.2040 0.2300 REMARK 3 16 2.0600 - 2.0100 1.00 2344 138 0.2155 0.2193 REMARK 3 17 2.0100 - 1.9700 1.00 2338 137 0.2221 0.2365 REMARK 3 18 1.9700 - 1.9300 1.00 2341 137 0.2452 0.2608 REMARK 3 19 1.9300 - 1.9000 1.00 2356 138 0.2817 0.3126 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.197 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.797 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 1856 REMARK 3 ANGLE : 1.402 2529 REMARK 3 CHIRALITY : 0.092 285 REMARK 3 PLANARITY : 0.010 335 REMARK 3 DIHEDRAL : 11.340 1092 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 351.7085 132.4787 381.9896 REMARK 3 T TENSOR REMARK 3 T11: 0.2644 T22: 0.2835 REMARK 3 T33: 0.3718 T12: -0.0852 REMARK 3 T13: 0.0033 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 1.4065 L22: 1.1213 REMARK 3 L33: 1.6292 L12: 0.4460 REMARK 3 L13: 0.1113 L23: 0.0130 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: -0.0154 S13: -0.1050 REMARK 3 S21: 0.0670 S22: 0.0303 S23: 0.1926 REMARK 3 S31: 0.0292 S32: -0.0703 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ECD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236064. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48063 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 107.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 37.20 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6ECB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.65 M DL-MALIC ACID, PH 8.0, 25 MM REMARK 280 HEPES, PH 8.0, 100 MM SODIUM CHLORIDE, 0.2 MM TCEP, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2759 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2353 REMARK 465 HIS A 2354 REMARK 465 HIS A 2355 REMARK 465 HIS A 2356 REMARK 465 HIS A 2357 REMARK 465 HIS A 2358 REMARK 465 HIS A 2359 REMARK 465 HIS A 2360 REMARK 465 HIS A 2361 REMARK 465 GLU A 2362 REMARK 465 ASN A 2363 REMARK 465 LEU A 2364 REMARK 465 TYR A 2365 REMARK 465 PHE A 2366 REMARK 465 GLN A 2367 REMARK 465 GLY A 2368 REMARK 465 GLY A 2369 REMARK 465 SER A 2370 REMARK 465 SER A 2371 REMARK 465 THR A 2372 REMARK 465 ALA A 2373 REMARK 465 GLY A 2374 REMARK 465 ARG A 2386 REMARK 465 GLY A 2387 REMARK 465 ALA A 2429 REMARK 465 GLY A 2430 REMARK 465 GLY A 2496 REMARK 465 ASP A 2497 REMARK 465 ILE A 2498 REMARK 465 PRO A 2499 REMARK 465 VAL A 2500 REMARK 465 ALA A 2501 REMARK 465 ASP A 2502 REMARK 465 ALA A 2503 REMARK 465 ASP A 2504 REMARK 465 LEU A 2505 REMARK 465 THR A 2506 REMARK 465 GLU A 2507 REMARK 465 GLU A 2508 REMARK 465 GLU A 2509 REMARK 465 THR A 2510 REMARK 465 ASP A 2526 REMARK 465 ARG A 2527 REMARK 465 ASP A 2528 REMARK 465 ALA A 2529 REMARK 465 LEU A 2530 REMARK 465 LYS A 2531 REMARK 465 ASP A 2532 REMARK 465 LEU A 2533 REMARK 465 PRO A 2534 REMARK 465 TYR A 2535 REMARK 465 SER A 2649 REMARK 465 ASP A 2650 REMARK 465 ASP A 2651 REMARK 465 GLY A 2652 REMARK 465 PRO A 2653 REMARK 465 ARG A 2654 REMARK 465 GLY A 2655 REMARK 465 VAD B 3009 REMARK 465 DVA B 3010 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A2375 CG OD1 OD2 REMARK 470 LYS A2511 CG CD CE NZ REMARK 470 VAL A2512 CG1 CG2 REMARK 470 PHE A2513 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A2514 CG1 CG2 CD1 REMARK 470 LEU A2515 CG CD1 CD2 REMARK 470 MET A2517 CG SD CE REMARK 470 ILE A2519 CG1 CG2 CD1 REMARK 470 LEU A2523 CG CD1 CD2 REMARK 470 ASP A2524 CG OD1 OD2 REMARK 470 GLN A2525 CG CD OE1 NE2 REMARK 470 GLU A2536 CG CD OE1 OE2 REMARK 470 GLU A2537 CG CD OE1 OE2 REMARK 470 LYS A2539 CG CD CE NZ REMARK 470 LEU A2541 CG CD1 CD2 REMARK 470 LEU A2542 CG CD1 CD2 REMARK 470 LEU A2543 CG CD1 CD2 REMARK 470 ASP A2544 CG OD1 OD2 REMARK 470 ARG A2545 CG CD NE CZ NH1 NH2 REMARK 470 LYS A2547 CG CD CE NZ REMARK 470 ASN A2548 CG OD1 ND2 REMARK 470 ARG A2551 CG CD NE CZ NH1 NH2 REMARK 470 GLU A2558 CG CD OE1 OE2 REMARK 470 ARG A2576 CG CD NE CZ NH1 NH2 REMARK 470 LYS A2595 CG CD CE NZ REMARK 470 GLU A2615 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 DPP A2463 -134.01 57.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ECB RELATED DB: PDB REMARK 900 RELATED ID: 6ECC RELATED DB: PDB REMARK 900 RELATED ID: 6ECE RELATED DB: PDB REMARK 900 RELATED ID: 6ECF RELATED DB: PDB DBREF 6ECD A 2368 2655 UNP Q1PSF3 Q1PSF3_9ACTN 2368 2655 DBREF 6ECD B 3009 3012 PDB 6ECD 6ECD 3009 3012 SEQADV 6ECD MET A 2353 UNP Q1PSF3 EXPRESSION TAG SEQADV 6ECD HIS A 2354 UNP Q1PSF3 EXPRESSION TAG SEQADV 6ECD HIS A 2355 UNP Q1PSF3 EXPRESSION TAG SEQADV 6ECD HIS A 2356 UNP Q1PSF3 EXPRESSION TAG SEQADV 6ECD HIS A 2357 UNP Q1PSF3 EXPRESSION TAG SEQADV 6ECD HIS A 2358 UNP Q1PSF3 EXPRESSION TAG SEQADV 6ECD HIS A 2359 UNP Q1PSF3 EXPRESSION TAG SEQADV 6ECD HIS A 2360 UNP Q1PSF3 EXPRESSION TAG SEQADV 6ECD HIS A 2361 UNP Q1PSF3 EXPRESSION TAG SEQADV 6ECD GLU A 2362 UNP Q1PSF3 EXPRESSION TAG SEQADV 6ECD ASN A 2363 UNP Q1PSF3 EXPRESSION TAG SEQADV 6ECD LEU A 2364 UNP Q1PSF3 EXPRESSION TAG SEQADV 6ECD TYR A 2365 UNP Q1PSF3 EXPRESSION TAG SEQADV 6ECD PHE A 2366 UNP Q1PSF3 EXPRESSION TAG SEQADV 6ECD GLN A 2367 UNP Q1PSF3 EXPRESSION TAG SEQRES 1 A 303 MET HIS HIS HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR SEQRES 2 A 303 PHE GLN GLY GLY SER SER THR ALA GLY ASP PRO THR ALA SEQRES 3 A 303 LYS LEU VAL ARG LEU ASN PRO ARG GLY GLY ASP GLY PRO SEQRES 4 A 303 GLY ILE VAL PHE ALA PRO PRO ALA GLY GLY THR VAL LEU SEQRES 5 A 303 GLY TYR ILE GLU LEU ALA ARG HIS LEU LYS GLY PHE GLY SEQRES 6 A 303 GLU ILE HIS GLY VAL GLU ALA PRO GLY LEU GLY ALA GLY SEQRES 7 A 303 GLU THR PRO VAL TYR PRO SER PHE GLU GLU MET VAL GLN SEQRES 8 A 303 PHE CYS SER ASP SER ALA ALA GLY VAL ALA GLY ASP GLY SEQRES 9 A 303 VAL TYR ILE GLY GLY HIS DPP LEU GLY GLY HIS ILE ALA SEQRES 10 A 303 PHE TYR LEU ALA THR MET LEU LEU ASP ARG GLY ILE ARG SEQRES 11 A 303 PRO LYS GLY LEU ILE ILE LEU ASP THR PRO PRO ARG LEU SEQRES 12 A 303 GLY ASP ILE PRO VAL ALA ASP ALA ASP LEU THR GLU GLU SEQRES 13 A 303 GLU THR LYS VAL PHE ILE LEU ALA MET GLY ILE GLY GLY SEQRES 14 A 303 MET LEU ASP GLN ASP ARG ASP ALA LEU LYS ASP LEU PRO SEQRES 15 A 303 TYR GLU GLU ALA LYS GLN LEU LEU LEU ASP ARG ALA LYS SEQRES 16 A 303 ASN ASP PRO ARG VAL SER ALA PHE LEU SER GLU ASP TYR SEQRES 17 A 303 LEU ASP ARG PHE LEU ARG LEU GLN MET HIS GLN LEU MET SEQRES 18 A 303 TYR SER ARG ASP VAL VAL LEU PRO GLN ARG LYS LEU ASP SEQRES 19 A 303 ILE PRO ILE HIS VAL PHE ARG THR LYS ASN HIS ALA PRO SEQRES 20 A 303 GLU VAL ALA ARG LEU PHE SER ALA TRP GLU ASN TYR ALA SEQRES 21 A 303 ALA GLY GLU VAL THR PHE VAL ASP ILE PRO GLY ASP HIS SEQRES 22 A 303 ALA THR MET LEU ARG ALA PRO HIS VAL SER GLU VAL ALA SEQRES 23 A 303 GLN LEU LEU ASP ARG HIS CYS GLY LEU PRO SER ASP ASP SEQRES 24 A 303 GLY PRO ARG GLY SEQRES 1 B 4 VAD DVA 2OP VAL MODRES 6ECD DPP A 2463 SER MODIFIED RESIDUE HET DPP A2463 10 HET 2OP B3011 9 HETNAM DPP DIAMINOPROPANOIC ACID HETNAM 2OP (2S)-2-HYDROXYPROPANOIC ACID FORMUL 1 DPP C3 H8 N2 O2 FORMUL 2 2OP C3 H6 O3 FORMUL 3 HOH *106(H2 O) HELIX 1 AA1 VAL A 2403 GLY A 2405 5 3 HELIX 2 AA2 TYR A 2406 LEU A 2413 1 8 HELIX 3 AA3 SER A 2437 ALA A 2450 1 14 HELIX 4 AA4 DPP A 2463 ARG A 2479 1 17 HELIX 5 AA5 VAL A 2512 GLY A 2518 1 7 HELIX 6 AA6 GLY A 2518 LEU A 2523 1 6 HELIX 7 AA7 GLU A 2537 ASN A 2548 1 12 HELIX 8 AA8 SER A 2557 MET A 2573 1 17 HELIX 9 AA9 SER A 2575 LEU A 2580 1 6 HELIX 10 AB1 ALA A 2598 ARG A 2603 1 6 HELIX 11 AB2 LEU A 2604 ALA A 2612 5 9 HELIX 12 AB3 PRO A 2632 GLY A 2646 1 15 SHEET 1 AA1 7 LYS A2379 ARG A2382 0 SHEET 2 AA1 7 ILE A2419 GLU A2423 -1 O GLU A2423 N LYS A2379 SHEET 3 AA1 7 GLY A2392 ALA A2396 1 N ILE A2393 O HIS A2420 SHEET 4 AA1 7 VAL A2457 HIS A2462 1 O TYR A2458 N GLY A2392 SHEET 5 AA1 7 GLY A2485 LEU A2489 1 O ILE A2487 N ILE A2459 SHEET 6 AA1 7 ILE A2589 ARG A2593 1 O HIS A2590 N ILE A2488 SHEET 7 AA1 7 VAL A2616 ASP A2620 1 O THR A2617 N VAL A2591 LINK C HIS A2462 N DPP A2463 1555 1555 1.32 LINK C DPP A2463 N LEU A2464 1555 1555 1.32 LINK NG DPP A2463 C VAL B3012 1555 1555 1.34 LINK C 2OP B3011 N VAL B3012 1555 1555 1.33 CISPEP 1 ALA A 2631 PRO A 2632 0 -1.13 CRYST1 152.298 152.298 152.298 90.00 90.00 90.00 P 4 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006566 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006566 0.00000