HEADER VIRAL PROTEIN 08-AUG-18 6ECO TITLE HEXAMER-2-FOLDON HIV-1 CAPSID PLATFORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 CAPSID PLATFORM PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PR55GAG; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HIV-1 CAPSID PLATFORM PROTEIN; COMPND 9 CHAIN: D; COMPND 10 SYNONYM: PR55GAG; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 GENE: GAG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 13 ORGANISM_COMMON: HIV-1; SOURCE 14 ORGANISM_TAXID: 11676; SOURCE 15 GENE: GAG; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS DISULFIDE, CAPSID, TEMPLATE-DRIVEN POLYMERIZATION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.J.SUMMERS,Y.XIONG REVDAT 4 13-NOV-24 6ECO 1 REMARK REVDAT 3 11-OCT-23 6ECO 1 REMARK REVDAT 2 01-JAN-20 6ECO 1 REMARK REVDAT 1 18-SEP-19 6ECO 0 JRNL AUTH B.J.SUMMERS,K.M.DIGIANANTONIO,S.S.SMAGA,P.T.HUANG,K.ZHOU, JRNL AUTH 2 E.E.GERBER,W.WANG,Y.XIONG JRNL TITL MODULAR HIV-1 CAPSID ASSEMBLIES REVEAL DIVERSE HOST-CAPSID JRNL TITL 2 RECOGNITION MECHANISMS. JRNL REF CELL HOST MICROBE V. 26 203 2019 JRNL REFN ESSN 1934-6069 JRNL PMID 31415753 JRNL DOI 10.1016/J.CHOM.2019.07.007 REMARK 2 REMARK 2 RESOLUTION. 4.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 4690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.288 REMARK 3 R VALUE (WORKING SET) : 0.286 REMARK 3 FREE R VALUE : 0.316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 214 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 327 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.4750 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3252 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 256.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.68000 REMARK 3 B22 (A**2) : -12.68000 REMARK 3 B33 (A**2) : 41.15000 REMARK 3 B12 (A**2) : -6.34000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 1.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 2.393 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 375.953 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3323 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4517 ; 1.349 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 422 ; 4.601 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;33.166 ;24.926 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 551 ;11.464 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.074 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 510 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2487 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 221 D 1 221 520 0.16 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 221 REMARK 3 RESIDUE RANGE : D 148 D 221 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3138 281.6923 152.5298 REMARK 3 T TENSOR REMARK 3 T11: 0.5844 T22: 0.2116 REMARK 3 T33: 0.8190 T12: -0.1560 REMARK 3 T13: -0.4363 T23: -0.1643 REMARK 3 L TENSOR REMARK 3 L11: 1.7933 L22: 3.2035 REMARK 3 L33: 2.1222 L12: -0.4593 REMARK 3 L13: -1.3642 L23: -1.4776 REMARK 3 S TENSOR REMARK 3 S11: -0.2358 S12: 0.0647 S13: -0.0569 REMARK 3 S21: 0.0259 S22: 0.0966 S23: -0.1844 REMARK 3 S31: 0.2294 S32: -0.1382 S33: 0.1392 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ECO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20180126 REMARK 200 DATA SCALING SOFTWARE : XDS 20180126 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8601 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.31 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 7.0.0 REMARK 200 STARTING MODEL: 4XFX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CHLORIDE, 0.1M HEPES PH REMARK 280 7.5, 12% PEG 8000, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 5 REMARK 465 LEU A 6 REMARK 465 GLN A 7 REMARK 465 ALA A 88 REMARK 465 GLY A 89 REMARK 465 PRO A 90 REMARK 465 ILE A 91 REMARK 465 ALA A 92 REMARK 465 PRO A 93 REMARK 465 GLY A 94 REMARK 465 GLN A 95 REMARK 465 GLY A 222 REMARK 465 GLY A 223 REMARK 465 PRO A 224 REMARK 465 GLY A 225 REMARK 465 HIS A 226 REMARK 465 GLY A 227 REMARK 465 TYR A 228 REMARK 465 ILE A 229 REMARK 465 PRO A 230 REMARK 465 GLU A 231 REMARK 465 ALA A 232 REMARK 465 PRO A 233 REMARK 465 ARG A 234 REMARK 465 ASP A 235 REMARK 465 GLY A 236 REMARK 465 GLN A 237 REMARK 465 ALA A 238 REMARK 465 TYR A 239 REMARK 465 VAL A 240 REMARK 465 ARG A 241 REMARK 465 LYS A 242 REMARK 465 ASP A 243 REMARK 465 GLY A 244 REMARK 465 GLU A 245 REMARK 465 TRP A 246 REMARK 465 VAL A 247 REMARK 465 LEU A 248 REMARK 465 LEU A 249 REMARK 465 SER A 250 REMARK 465 THR A 251 REMARK 465 PHE A 252 REMARK 465 LEU A 253 REMARK 465 VAL D 86 REMARK 465 HIS D 87 REMARK 465 ALA D 88 REMARK 465 GLY D 89 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 3 CG1 CG2 REMARK 470 GLN A 4 CG CD OE1 NE2 REMARK 470 GLN A 9 CG CD OE1 NE2 REMARK 470 MET A 10 CG SD CE REMARK 470 VAL A 11 CG1 CG2 REMARK 470 VAL A 24 CG1 CG2 REMARK 470 PHE A 32 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 ILE A 37 CG1 CG2 CD1 REMARK 470 THR A 58 OG1 CG2 REMARK 470 GLN A 63 CG CD OE1 NE2 REMARK 470 VAL A 86 CG1 CG2 REMARK 470 HIS A 87 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 138 CG CD1 CD2 REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 5 CG OD1 ND2 REMARK 470 GLN D 9 CG CD OE1 NE2 REMARK 470 GLU D 35 CG CD OE1 OE2 REMARK 470 ILE D 37 CG1 CG2 CD1 REMARK 470 MET D 39 CG SD CE REMARK 470 GLU D 42 CG CD OE1 OE2 REMARK 470 ILE D 91 CG1 CG2 CD1 REMARK 470 GLN D 95 CG CD OE1 NE2 REMARK 470 MET D 96 CG SD CE REMARK 470 THR D 108 OG1 CG2 REMARK 470 LYS D 131 CG CD CE NZ REMARK 470 ASN D 139 CG OD1 ND2 REMARK 470 ARG D 143 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 176 CG CD OE1 NE2 REMARK 470 ASP D 204 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 -120.03 60.81 REMARK 500 GLU A 35 -6.46 -58.64 REMARK 500 PRO A 207 30.52 -92.61 REMARK 500 ALA D 31 -128.49 63.73 REMARK 500 SER D 44 44.96 -103.26 REMARK 500 SER D 146 78.35 -155.99 REMARK 500 PRO D 147 94.02 -37.46 REMARK 500 PRO D 207 31.09 -95.20 REMARK 500 REMARK 500 REMARK: NULL DBREF 6ECO A 1 226 UNP P04591 GAG_HV1H2 133 358 DBREF 6ECO D 1 221 UNP P04591 GAG_HV1H2 133 353 SEQADV 6ECO LEU A 6 UNP P04591 ILE 138 CONFLICT SEQADV 6ECO CYS A 45 UNP P04591 GLU 177 ENGINEERED MUTATION SEQADV 6ECO GLU A 54 UNP P04591 THR 186 ENGINEERED MUTATION SEQADV 6ECO LEU A 83 UNP P04591 VAL 215 CONFLICT SEQADV 6ECO HIS A 120 UNP P04591 ASN 252 CONFLICT SEQADV 6ECO GLY A 208 UNP P04591 ALA 340 CONFLICT SEQADV 6ECO GLY A 227 UNP P04591 EXPRESSION TAG SEQADV 6ECO TYR A 228 UNP P04591 EXPRESSION TAG SEQADV 6ECO ILE A 229 UNP P04591 EXPRESSION TAG SEQADV 6ECO PRO A 230 UNP P04591 EXPRESSION TAG SEQADV 6ECO GLU A 231 UNP P04591 EXPRESSION TAG SEQADV 6ECO ALA A 232 UNP P04591 EXPRESSION TAG SEQADV 6ECO PRO A 233 UNP P04591 EXPRESSION TAG SEQADV 6ECO ARG A 234 UNP P04591 EXPRESSION TAG SEQADV 6ECO ASP A 235 UNP P04591 EXPRESSION TAG SEQADV 6ECO GLY A 236 UNP P04591 EXPRESSION TAG SEQADV 6ECO GLN A 237 UNP P04591 EXPRESSION TAG SEQADV 6ECO ALA A 238 UNP P04591 EXPRESSION TAG SEQADV 6ECO TYR A 239 UNP P04591 EXPRESSION TAG SEQADV 6ECO VAL A 240 UNP P04591 EXPRESSION TAG SEQADV 6ECO ARG A 241 UNP P04591 EXPRESSION TAG SEQADV 6ECO LYS A 242 UNP P04591 EXPRESSION TAG SEQADV 6ECO ASP A 243 UNP P04591 EXPRESSION TAG SEQADV 6ECO GLY A 244 UNP P04591 EXPRESSION TAG SEQADV 6ECO GLU A 245 UNP P04591 EXPRESSION TAG SEQADV 6ECO TRP A 246 UNP P04591 EXPRESSION TAG SEQADV 6ECO VAL A 247 UNP P04591 EXPRESSION TAG SEQADV 6ECO LEU A 248 UNP P04591 EXPRESSION TAG SEQADV 6ECO LEU A 249 UNP P04591 EXPRESSION TAG SEQADV 6ECO SER A 250 UNP P04591 EXPRESSION TAG SEQADV 6ECO THR A 251 UNP P04591 EXPRESSION TAG SEQADV 6ECO PHE A 252 UNP P04591 EXPRESSION TAG SEQADV 6ECO LEU A 253 UNP P04591 EXPRESSION TAG SEQADV 6ECO LEU D 6 UNP P04591 ILE 138 CONFLICT SEQADV 6ECO CYS D 14 UNP P04591 ALA 146 ENGINEERED MUTATION SEQADV 6ECO GLU D 42 UNP P04591 ALA 174 ENGINEERED MUTATION SEQADV 6ECO LEU D 83 UNP P04591 VAL 215 CONFLICT SEQADV 6ECO HIS D 120 UNP P04591 ASN 252 CONFLICT SEQADV 6ECO ASP D 204 UNP P04591 ALA 336 ENGINEERED MUTATION SEQADV 6ECO GLY D 208 UNP P04591 ALA 340 CONFLICT SEQRES 1 A 253 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 A 253 ALA ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 A 253 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 A 253 PHE SER ALA LEU SER CYS GLY ALA THR PRO GLN ASP LEU SEQRES 5 A 253 ASN GLU MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 A 253 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 A 253 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 A 253 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 A 253 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 A 253 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 A 253 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 A 253 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 A 253 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 A 253 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 A 253 ASN TRP MET THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 A 253 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 A 253 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 A 253 GLY GLY PRO GLY HIS GLY TYR ILE PRO GLU ALA PRO ARG SEQRES 19 A 253 ASP GLY GLN ALA TYR VAL ARG LYS ASP GLY GLU TRP VAL SEQRES 20 A 253 LEU LEU SER THR PHE LEU SEQRES 1 D 221 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 D 221 CYS ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 D 221 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 D 221 PHE SER GLU LEU SER GLU GLY ALA THR PRO GLN ASP LEU SEQRES 5 D 221 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 D 221 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 D 221 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 D 221 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 D 221 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 D 221 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 D 221 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 D 221 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 D 221 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 D 221 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 D 221 ASN TRP MET THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 D 221 PRO ASP CYS LYS THR ILE LEU LYS ASP LEU GLY PRO GLY SEQRES 17 D 221 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL HELIX 1 AA1 SER A 16 ALA A 31 1 16 HELIX 2 AA2 GLU A 35 SER A 44 1 10 HELIX 3 AA3 THR A 48 THR A 58 1 11 HELIX 4 AA4 HIS A 62 HIS A 84 1 23 HELIX 5 AA5 ARG A 100 ALA A 105 1 6 HELIX 6 AA6 THR A 110 THR A 119 1 10 HELIX 7 AA7 PRO A 125 SER A 146 1 22 HELIX 8 AA8 SER A 149 ILE A 153 5 5 HELIX 9 AA9 PRO A 160 ALA A 174 1 15 HELIX 10 AB1 SER A 178 ASN A 193 1 16 HELIX 11 AB2 ASN A 195 GLY A 206 1 12 HELIX 12 AB3 THR A 210 CYS A 218 1 9 HELIX 13 AB4 SER D 16 ALA D 31 1 16 HELIX 14 AB5 GLU D 35 SER D 44 1 10 HELIX 15 AB6 THR D 48 THR D 58 1 11 HELIX 16 AB7 HIS D 62 HIS D 84 1 23 HELIX 17 AB8 ARG D 100 ALA D 105 1 6 HELIX 18 AB9 THR D 110 THR D 119 1 10 HELIX 19 AC1 PRO D 125 SER D 146 1 22 HELIX 20 AC2 SER D 149 ILE D 153 5 5 HELIX 21 AC3 PRO D 160 ALA D 174 1 15 HELIX 22 AC4 SER D 178 ASN D 193 1 16 HELIX 23 AC5 ASN D 195 GLY D 206 1 12 HELIX 24 AC6 THR D 210 CYS D 218 1 9 SHEET 1 AA1 2 ILE A 2 VAL A 3 0 SHEET 2 AA1 2 VAL A 11 HIS A 12 -1 O VAL A 11 N VAL A 3 SHEET 1 AA2 2 ILE D 2 GLN D 4 0 SHEET 2 AA2 2 MET D 10 HIS D 12 -1 O VAL D 11 N VAL D 3 SSBOND 1 CYS A 45 CYS D 14 1555 1555 2.03 CISPEP 1 ASN A 121 PRO A 122 0 3.63 CISPEP 2 ASN D 121 PRO D 122 0 5.11 CRYST1 95.250 95.250 122.570 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010499 0.006061 0.000000 0.00000 SCALE2 0.000000 0.012123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008159 0.00000