HEADER VIRUS LIKE PARTICLE 09-AUG-18 6EDJ TITLE CRYO-EM STRUCTURE OF WOODCHUCK HEPATITIS VIRUS CAPSID COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTERNAL CORE ANTIGEN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 31-179; COMPND 5 SYNONYM: CAPSID, HBEAG, PRECORE PROTEIN, P25; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WOODCHUCK HEPATITIS VIRUS; SOURCE 3 ORGANISM_COMMON: WHV; SOURCE 4 ORGANISM_TAXID: 35269; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS WHV, CAPSID STRUCTURE, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR Z.ZHAO,J.C.WANG,A.ZLOTNICK REVDAT 4 13-MAR-24 6EDJ 1 REMARK REVDAT 3 18-DEC-19 6EDJ 1 REMARK REVDAT 2 13-NOV-19 6EDJ 1 JRNL REVDAT 1 01-MAY-19 6EDJ 0 JRNL AUTH Z.ZHAO,J.C.WANG,G.GONZALEZ-GUTIERREZ,B.VENKATAKRISHNAN, JRNL AUTH 2 R.ASOR,D.KHAYKELSON,U.RAVIV,A.ZLOTNICK JRNL TITL STRUCTURAL DIFFERENCES BETWEEN THE WOODCHUCK HEPATITIS VIRUS JRNL TITL 2 CORE PROTEIN IN THE DIMER AND CAPSID STATES ARE CONSISTENT JRNL TITL 3 WITH ENTROPIC AND CONFORMATIONAL REGULATION OF ASSEMBLY. JRNL REF J.VIROL. V. 93 2019 JRNL REFN ESSN 1098-5514 JRNL PMID 31043524 JRNL DOI 10.1128/JVI.00141-19 REMARK 2 REMARK 2 RESOLUTION. 4.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EMAN2, RELION, EMAN2, RELION, MDFF, REMARK 3 PHENIX, PHENIX, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 6ECS REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.520 REMARK 3 NUMBER OF PARTICLES : 7911 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6EDJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236091. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : WOODCHUCK HEPATITIS VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 10.00 REMARK 245 SAMPLE SUPPORT DETAILS : UNSPECIFIED REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309018 -0.498847 0.809728 99.31856 REMARK 350 BIOMT2 2 0.499988 0.809461 0.307872 -158.99728 REMARK 350 BIOMT3 2 -0.809024 0.309716 0.499555 257.49405 REMARK 350 BIOMT1 3 -0.809015 -0.307165 0.501143 417.82526 REMARK 350 BIOMT2 3 0.310149 0.501163 0.807864 -158.76611 REMARK 350 BIOMT3 3 -0.499301 0.809003 -0.310181 256.53142 REMARK 350 BIOMT1 4 -0.809015 0.310149 -0.499301 515.35466 REMARK 350 BIOMT2 4 -0.307165 0.501163 0.809003 0.37405 REMARK 350 BIOMT3 4 0.501143 0.807864 -0.310181 -1.55756 REMARK 350 BIOMT1 5 0.309018 0.499988 -0.809024 257.12445 REMARK 350 BIOMT2 5 -0.498847 0.809461 0.309716 98.49690 REMARK 350 BIOMT3 5 0.809728 0.307872 0.499555 -160.10270 REMARK 350 BIOMT1 6 -0.497219 0.810152 0.310527 98.28650 REMARK 350 BIOMT2 6 0.810152 0.305432 0.500364 -158.59929 REMARK 350 BIOMT3 6 0.310527 0.500364 -0.808213 254.64161 REMARK 350 BIOMT1 7 0.000193 0.999998 0.001936 0.05016 REMARK 350 BIOMT2 7 -0.001743 -0.001936 0.999997 2.14182 REMARK 350 BIOMT3 7 0.999998 -0.000196 0.001743 -2.18404 REMARK 350 BIOMT1 8 0.498480 0.809963 0.308995 -158.42902 REMARK 350 BIOMT2 8 -0.810528 0.309017 0.497546 259.76968 REMARK 350 BIOMT3 8 0.307509 -0.498466 0.810537 97.61442 REMARK 350 BIOMT1 9 0.309026 0.502669 0.807358 -158.13820 REMARK 350 BIOMT2 9 -0.498489 0.808566 -0.312618 258.25135 REMARK 350 BIOMT3 9 -0.809945 -0.305853 0.500443 416.11890 REMARK 350 BIOMT1 10 -0.306350 0.502786 0.808304 0.52072 REMARK 350 BIOMT2 10 0.503146 0.806350 -0.310876 -0.31490 REMARK 350 BIOMT3 10 -0.808080 0.311459 -0.500000 513.16704 REMARK 350 BIOMT1 11 0.310321 -0.504315 -0.805833 514.74973 REMARK 350 BIOMT2 11 -0.504315 -0.805899 0.310148 516.03099 REMARK 350 BIOMT3 11 -0.805833 0.310148 -0.504422 514.05836 REMARK 350 BIOMT1 12 0.495682 -0.812606 -0.306547 418.25802 REMARK 350 BIOMT2 12 -0.809700 -0.304710 -0.501536 673.94028 REMARK 350 BIOMT3 12 0.314143 0.496813 -0.809006 254.82583 REMARK 350 BIOMT1 13 -0.005115 -0.999985 -0.001949 517.75655 REMARK 350 BIOMT2 13 0.003192 0.001932 -0.999993 512.82756 REMARK 350 BIOMT3 13 0.999982 -0.005121 0.003182 -1.28007 REMARK 350 BIOMT1 14 -0.499984 -0.807501 -0.312982 675.74175 REMARK 350 BIOMT2 14 0.810971 -0.309742 -0.496372 255.34514 REMARK 350 BIOMT3 14 0.303877 -0.501998 0.809726 99.67031 REMARK 350 BIOMT1 15 -0.305034 -0.501160 -0.809810 673.88343 REMARK 350 BIOMT2 15 0.497314 -0.809010 0.313340 257.32497 REMARK 350 BIOMT3 15 -0.812178 -0.307151 0.496010 418.16697 REMARK 350 BIOMT1 16 -0.813102 -0.305837 0.495306 420.03562 REMARK 350 BIOMT2 16 -0.305837 -0.499533 -0.810513 673.25534 REMARK 350 BIOMT3 16 0.495306 -0.810513 0.312635 257.21977 REMARK 350 BIOMT1 17 -0.804893 0.311455 -0.505117 515.44511 REMARK 350 BIOMT2 17 0.311455 -0.502815 -0.806333 513.60223 REMARK 350 BIOMT3 17 -0.505117 -0.806333 0.307708 515.78389 REMARK 350 BIOMT1 18 0.315650 0.497187 -0.808190 255.91906 REMARK 350 BIOMT2 18 0.497187 -0.812112 -0.305416 416.85591 REMARK 350 BIOMT3 18 -0.808190 -0.305416 -0.503538 673.05396 REMARK 350 BIOMT1 19 0.999974 -0.005317 0.004925 0.11365 REMARK 350 BIOMT2 19 -0.005317 -0.999986 -0.000013 516.71651 REMARK 350 BIOMT3 19 0.004925 -0.000013 -0.999988 511.68809 REMARK 350 BIOMT1 20 0.302366 -0.501613 0.810530 101.54326 REMARK 350 BIOMT2 20 -0.501613 -0.806801 -0.312180 675.18007 REMARK 350 BIOMT3 20 0.810530 -0.312180 -0.495565 254.68842 REMARK 350 BIOMT1 21 -0.311671 -0.495675 0.810659 258.56611 REMARK 350 BIOMT2 21 -0.498358 0.811667 0.304689 99.09138 REMARK 350 BIOMT3 21 -0.809012 -0.309036 -0.499996 673.29069 REMARK 350 BIOMT1 22 -0.999986 0.005321 -0.000004 515.16223 REMARK 350 BIOMT2 22 0.005321 0.999985 -0.001436 -1.00201 REMARK 350 BIOMT3 22 -0.000004 -0.001436 -0.999999 513.33056 REMARK 350 BIOMT1 23 -0.306350 0.503146 -0.808080 414.99810 REMARK 350 BIOMT2 23 0.502786 0.806350 0.311459 -159.83815 REMARK 350 BIOMT3 23 0.808304 -0.310876 -0.500000 256.06470 REMARK 350 BIOMT1 24 0.810656 0.309824 -0.496836 96.49714 REMARK 350 BIOMT2 24 0.306557 0.498359 0.810963 -157.91088 REMARK 350 BIOMT3 24 0.498858 -0.809721 0.309019 257.02577 REMARK 350 BIOMT1 25 0.807368 -0.307482 0.503600 -0.18314 REMARK 350 BIOMT2 25 -0.312184 0.501645 0.806779 2.11637 REMARK 350 BIOMT3 25 -0.500698 -0.808583 0.309021 514.88562 REMARK 350 BIOMT1 26 0.005128 0.001729 -0.999985 512.97427 REMARK 350 BIOMT2 26 0.999981 -0.003381 0.005122 -1.03374 REMARK 350 BIOMT3 26 -0.003372 -0.999993 -0.001746 515.46872 REMARK 350 BIOMT1 27 0.811462 -0.310870 -0.494864 255.71832 REMARK 350 BIOMT2 27 0.303178 -0.499989 0.811230 100.13938 REMARK 350 BIOMT3 27 -0.499613 -0.808314 -0.311473 673.68022 REMARK 350 BIOMT1 28 0.495682 -0.809700 0.314143 258.31453 REMARK 350 BIOMT2 28 -0.812606 -0.304710 0.496813 418.63436 REMARK 350 BIOMT3 28 -0.306547 -0.501536 -0.809006 672.37664 REMARK 350 BIOMT1 29 -0.505815 -0.805395 0.309015 517.17502 REMARK 350 BIOMT2 29 -0.805395 0.312587 -0.503616 514.30197 REMARK 350 BIOMT3 29 0.309015 -0.503616 -0.806772 513.35949 REMARK 350 BIOMT1 30 -0.808994 -0.303904 -0.503161 674.56339 REMARK 350 BIOMT2 30 0.314846 0.498818 -0.807498 254.93282 REMARK 350 BIOMT3 30 0.496388 -0.811679 -0.307858 416.38506 REMARK 350 BIOMT1 31 -0.499997 0.808069 -0.311492 259.07626 REMARK 350 BIOMT2 31 -0.809516 -0.308293 0.499639 418.03500 REMARK 350 BIOMT3 31 0.307712 0.501976 0.808291 -159.64746 REMARK 350 BIOMT1 32 0.501521 0.807048 -0.311688 0.72907 REMARK 350 BIOMT2 32 -0.808518 0.309020 -0.500806 515.30683 REMARK 350 BIOMT3 32 -0.307857 0.503169 0.807493 -0.76883 REMARK 350 BIOMT1 33 0.810656 0.306557 0.498858 -158.03675 REMARK 350 BIOMT2 33 0.309824 0.498359 -0.809721 256.91828 REMARK 350 BIOMT3 33 -0.496836 0.810963 0.309019 96.57731 REMARK 350 BIOMT1 34 0.000193 -0.001743 0.999998 2.18776 REMARK 350 BIOMT2 34 0.999998 -0.001936 -0.000196 -0.04644 REMARK 350 BIOMT3 34 0.001936 0.999997 0.001743 -2.13810 REMARK 350 BIOMT1 35 -0.809835 0.308208 0.499174 259.97778 REMARK 350 BIOMT2 35 0.308208 -0.500475 0.809032 99.52917 REMARK 350 BIOMT3 35 0.499174 0.809032 0.310310 -160.49372 REMARK 350 BIOMT1 36 0.806540 -0.314123 0.500819 2.45522 REMARK 350 BIOMT2 36 0.307893 -0.499993 -0.809450 514.59441 REMARK 350 BIOMT3 36 0.504673 0.807053 -0.306548 -3.19221 REMARK 350 BIOMT1 37 -0.312997 -0.501500 0.806555 261.46223 REMARK 350 BIOMT2 37 0.500019 -0.809016 -0.308989 416.24286 REMARK 350 BIOMT3 37 0.807474 0.306580 0.503979 -160.32222 REMARK 350 BIOMT1 38 -0.999988 -0.000004 -0.004921 517.79597 REMARK 350 BIOMT2 38 -0.000004 -0.999999 0.001449 514.97255 REMARK 350 BIOMT3 38 -0.004921 0.001449 0.999987 0.90109 REMARK 350 BIOMT1 39 -0.305034 0.497314 -0.812178 417.21193 REMARK 350 BIOMT2 39 -0.501160 -0.809010 -0.307151 674.34240 REMARK 350 BIOMT3 39 -0.809810 0.313340 0.496010 257.67257 REMARK 350 BIOMT1 40 0.811462 0.303178 -0.499613 98.71383 REMARK 350 BIOMT2 40 -0.310870 -0.499989 -0.808314 674.10870 REMARK 350 BIOMT3 40 -0.494864 0.811230 -0.311473 255.14278 REMARK 350 BIOMT1 41 -0.311671 -0.498358 -0.809012 674.67071 REMARK 350 BIOMT2 41 -0.495675 0.811667 -0.309036 255.80651 REMARK 350 BIOMT3 41 0.810659 0.304689 -0.499996 96.84189 REMARK 350 BIOMT1 42 0.309026 -0.498489 -0.809945 514.63789 REMARK 350 BIOMT2 42 0.502669 0.808566 -0.305853 -2.05096 REMARK 350 BIOMT3 42 0.807358 -0.312618 0.500443 0.16450 REMARK 350 BIOMT1 43 0.501521 -0.808518 -0.307857 416.03227 REMARK 350 BIOMT2 43 0.807048 0.309020 0.503169 -159.44155 REMARK 350 BIOMT3 43 -0.311688 -0.500806 0.807493 258.91656 REMARK 350 BIOMT1 44 -0.000206 -0.999994 0.003384 515.12348 REMARK 350 BIOMT2 44 -0.003178 0.003385 0.999989 1.14318 REMARK 350 BIOMT3 44 -0.999995 0.000195 -0.003179 515.51152 REMARK 350 BIOMT1 45 -0.502786 -0.808305 -0.306347 674.97082 REMARK 350 BIOMT2 45 -0.808305 0.314038 0.498019 257.78060 REMARK 350 BIOMT3 45 -0.306347 0.498019 -0.811252 415.34387 REMARK 350 BIOMT1 46 -0.499997 -0.809516 0.307712 517.06886 REMARK 350 BIOMT2 46 0.808069 -0.308293 0.501976 -0.33485 REMARK 350 BIOMT3 46 -0.311492 0.499639 0.808291 0.87532 REMARK 350 BIOMT1 47 -0.808202 -0.310546 -0.500370 675.35460 REMARK 350 BIOMT2 47 -0.310546 -0.497184 0.810166 258.19504 REMARK 350 BIOMT3 47 -0.500370 0.810166 0.305387 98.62715 REMARK 350 BIOMT1 48 -0.000206 -0.003178 -0.999995 515.61876 REMARK 350 BIOMT2 48 -0.999994 0.003385 0.000195 515.01589 REMARK 350 BIOMT3 48 0.003384 0.999989 -0.003179 -1.24783 REMARK 350 BIOMT1 49 0.807368 -0.312184 -0.500698 258.61086 REMARK 350 BIOMT2 49 -0.307482 0.501645 -0.808583 415.21001 REMARK 350 BIOMT3 49 0.503600 0.806780 0.309021 -160.72579 REMARK 350 BIOMT1 50 0.498480 -0.810528 0.307509 259.50706 REMARK 350 BIOMT2 50 0.809963 0.309017 -0.498466 96.70574 REMARK 350 BIOMT3 50 0.308995 0.497546 0.810537 -159.41361 REMARK 350 BIOMT1 51 0.806540 0.307893 0.504673 -158.80938 REMARK 350 BIOMT2 51 -0.314123 -0.499993 0.807053 260.64091 REMARK 350 BIOMT3 51 0.500819 -0.809450 -0.306548 414.33021 REMARK 350 BIOMT1 52 -0.005115 0.003192 0.999982 2.29106 REMARK 350 BIOMT2 52 -0.999985 0.001932 -0.005121 516.75135 REMARK 350 BIOMT3 52 -0.001949 -0.999993 0.003182 513.83694 REMARK 350 BIOMT1 53 -0.808994 0.314846 0.496388 258.76490 REMARK 350 BIOMT2 53 -0.303904 0.498818 -0.811679 415.80849 REMARK 350 BIOMT3 53 -0.503161 -0.807498 -0.307858 673.45902 REMARK 350 BIOMT1 54 -0.494164 0.812159 -0.310160 256.17400 REMARK 350 BIOMT2 54 0.812159 0.303986 -0.497986 97.31194 REMARK 350 BIOMT3 54 -0.310160 -0.497986 -0.809821 672.60416 REMARK 350 BIOMT1 55 0.504291 0.807862 -0.305039 -1.90109 REMARK 350 BIOMT2 55 0.805843 -0.313313 0.502445 1.41310 REMARK 350 BIOMT3 55 0.310334 -0.499192 -0.809012 512.45375 REMARK 350 BIOMT1 56 0.005128 0.999981 -0.003372 0.14166 REMARK 350 BIOMT2 56 0.001729 -0.003381 -0.999993 514.57448 REMARK 350 BIOMT3 56 -0.999985 0.005122 -0.001747 513.87232 REMARK 350 BIOMT1 57 0.504291 0.805843 0.310334 -159.21169 REMARK 350 BIOMT2 57 0.807862 -0.313313 -0.499192 257.79163 REMARK 350 BIOMT3 57 -0.305039 0.502445 -0.809012 413.29114 REMARK 350 BIOMT1 58 0.307679 0.496850 0.811464 -157.34408 REMARK 350 BIOMT2 58 0.496850 -0.811223 0.308314 259.30422 REMARK 350 BIOMT3 58 0.811464 0.308314 -0.496456 94.79197 REMARK 350 BIOMT1 59 -0.312997 0.500019 0.807474 3.16352 REMARK 350 BIOMT2 59 -0.501500 -0.809016 0.306580 517.02191 REMARK 350 BIOMT3 59 0.806555 -0.308989 0.503979 -1.47016 REMARK 350 BIOMT1 60 -0.499984 0.810971 0.303877 100.49506 REMARK 350 BIOMT2 60 -0.807501 -0.309742 -0.501998 674.78761 REMARK 350 BIOMT3 60 -0.312982 -0.496372 0.809726 257.53573 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 142 REMARK 465 LEU A 143 REMARK 465 PRO A 144 REMARK 465 GLU A 145 REMARK 465 HIS A 146 REMARK 465 THR A 147 REMARK 465 VAL A 148 REMARK 465 ILE A 149 REMARK 465 SER B 141 REMARK 465 THR B 142 REMARK 465 LEU B 143 REMARK 465 PRO B 144 REMARK 465 GLU B 145 REMARK 465 HIS B 146 REMARK 465 THR B 147 REMARK 465 VAL B 148 REMARK 465 ILE B 149 REMARK 465 THR C 142 REMARK 465 LEU C 143 REMARK 465 PRO C 144 REMARK 465 GLU C 145 REMARK 465 HIS C 146 REMARK 465 THR C 147 REMARK 465 VAL C 148 REMARK 465 ILE C 149 REMARK 465 SER D 141 REMARK 465 THR D 142 REMARK 465 LEU D 143 REMARK 465 PRO D 144 REMARK 465 GLU D 145 REMARK 465 HIS D 146 REMARK 465 THR D 147 REMARK 465 VAL D 148 REMARK 465 ILE D 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 49 135.48 -37.24 REMARK 500 ILE B 139 -166.29 -128.30 REMARK 500 SER C 49 126.29 -38.95 REMARK 500 ASP D 26 -169.53 -75.45 REMARK 500 ILE D 139 -152.69 -116.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-9031 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF WOODCHUCK HEPATITIS VIRUS CAPSID DBREF 6EDJ A 1 149 UNP P0C6J4 HBEAG_WHV3 31 179 DBREF 6EDJ B 1 149 UNP P0C6J4 HBEAG_WHV3 31 179 DBREF 6EDJ C 1 149 UNP P0C6J4 HBEAG_WHV3 31 179 DBREF 6EDJ D 1 149 UNP P0C6J4 HBEAG_WHV3 31 179 SEQRES 1 A 149 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY SER SER TYR SEQRES 2 A 149 GLN LEU LEU ASN PHE LEU PRO LEU ASP PHE PHE PRO ASP SEQRES 3 A 149 LEU ASN ALA LEU VAL ASP THR ALA THR ALA LEU TYR GLU SEQRES 4 A 149 GLU GLU LEU THR GLY ARG GLU HIS CYS SER PRO HIS HIS SEQRES 5 A 149 THR ALA ILE ARG GLN ALA LEU VAL CYS TRP ASP GLU LEU SEQRES 6 A 149 THR LYS LEU ILE ALA TRP MET SER SER ASN ILE THR SER SEQRES 7 A 149 GLU GLN VAL ARG THR ILE ILE VAL ASN HIS VAL ASN ASP SEQRES 8 A 149 THR TRP GLY LEU LYS VAL ARG GLN SER LEU TRP PHE HIS SEQRES 9 A 149 LEU SER CYS LEU THR PHE GLY GLN HIS THR VAL GLN GLU SEQRES 10 A 149 PHE LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO ALA SEQRES 11 A 149 PRO TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 A 149 PRO GLU HIS THR VAL ILE SEQRES 1 B 149 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY SER SER TYR SEQRES 2 B 149 GLN LEU LEU ASN PHE LEU PRO LEU ASP PHE PHE PRO ASP SEQRES 3 B 149 LEU ASN ALA LEU VAL ASP THR ALA THR ALA LEU TYR GLU SEQRES 4 B 149 GLU GLU LEU THR GLY ARG GLU HIS CYS SER PRO HIS HIS SEQRES 5 B 149 THR ALA ILE ARG GLN ALA LEU VAL CYS TRP ASP GLU LEU SEQRES 6 B 149 THR LYS LEU ILE ALA TRP MET SER SER ASN ILE THR SER SEQRES 7 B 149 GLU GLN VAL ARG THR ILE ILE VAL ASN HIS VAL ASN ASP SEQRES 8 B 149 THR TRP GLY LEU LYS VAL ARG GLN SER LEU TRP PHE HIS SEQRES 9 B 149 LEU SER CYS LEU THR PHE GLY GLN HIS THR VAL GLN GLU SEQRES 10 B 149 PHE LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO ALA SEQRES 11 B 149 PRO TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 B 149 PRO GLU HIS THR VAL ILE SEQRES 1 C 149 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY SER SER TYR SEQRES 2 C 149 GLN LEU LEU ASN PHE LEU PRO LEU ASP PHE PHE PRO ASP SEQRES 3 C 149 LEU ASN ALA LEU VAL ASP THR ALA THR ALA LEU TYR GLU SEQRES 4 C 149 GLU GLU LEU THR GLY ARG GLU HIS CYS SER PRO HIS HIS SEQRES 5 C 149 THR ALA ILE ARG GLN ALA LEU VAL CYS TRP ASP GLU LEU SEQRES 6 C 149 THR LYS LEU ILE ALA TRP MET SER SER ASN ILE THR SER SEQRES 7 C 149 GLU GLN VAL ARG THR ILE ILE VAL ASN HIS VAL ASN ASP SEQRES 8 C 149 THR TRP GLY LEU LYS VAL ARG GLN SER LEU TRP PHE HIS SEQRES 9 C 149 LEU SER CYS LEU THR PHE GLY GLN HIS THR VAL GLN GLU SEQRES 10 C 149 PHE LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO ALA SEQRES 11 C 149 PRO TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 C 149 PRO GLU HIS THR VAL ILE SEQRES 1 D 149 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY SER SER TYR SEQRES 2 D 149 GLN LEU LEU ASN PHE LEU PRO LEU ASP PHE PHE PRO ASP SEQRES 3 D 149 LEU ASN ALA LEU VAL ASP THR ALA THR ALA LEU TYR GLU SEQRES 4 D 149 GLU GLU LEU THR GLY ARG GLU HIS CYS SER PRO HIS HIS SEQRES 5 D 149 THR ALA ILE ARG GLN ALA LEU VAL CYS TRP ASP GLU LEU SEQRES 6 D 149 THR LYS LEU ILE ALA TRP MET SER SER ASN ILE THR SER SEQRES 7 D 149 GLU GLN VAL ARG THR ILE ILE VAL ASN HIS VAL ASN ASP SEQRES 8 D 149 THR TRP GLY LEU LYS VAL ARG GLN SER LEU TRP PHE HIS SEQRES 9 D 149 LEU SER CYS LEU THR PHE GLY GLN HIS THR VAL GLN GLU SEQRES 10 D 149 PHE LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO ALA SEQRES 11 D 149 PRO TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 D 149 PRO GLU HIS THR VAL ILE HELIX 1 AA1 SER A 12 ASN A 17 1 6 HELIX 2 AA2 ASP A 26 THR A 43 1 18 HELIX 3 AA3 PRO A 50 ASN A 75 1 26 HELIX 4 AA4 SER A 78 GLY A 111 1 34 HELIX 5 AA5 GLY A 111 THR A 128 1 18 HELIX 6 AA6 SER B 12 ASN B 17 1 6 HELIX 7 AA7 PHE B 18 LEU B 19 5 2 HELIX 8 AA8 PRO B 20 PHE B 24 5 5 HELIX 9 AA9 ASP B 26 TYR B 38 1 13 HELIX 10 AB1 TYR B 38 THR B 43 1 6 HELIX 11 AB2 SER B 49 ILE B 76 1 28 HELIX 12 AB3 SER B 78 THR B 92 1 15 HELIX 13 AB4 THR B 92 GLY B 111 1 20 HELIX 14 AB5 GLY B 111 THR B 128 1 18 HELIX 15 AB6 PRO B 129 ARG B 133 5 5 HELIX 16 AB7 ASP C 4 GLY C 10 5 7 HELIX 17 AB8 SER C 12 PHE C 18 1 7 HELIX 18 AB9 PRO C 20 PHE C 24 5 5 HELIX 19 AC1 ASP C 26 GLY C 44 1 19 HELIX 20 AC2 PRO C 50 ILE C 76 1 27 HELIX 21 AC3 SER C 78 GLY C 111 1 34 HELIX 22 AC4 GLY C 111 THR C 128 1 18 HELIX 23 AC5 LEU D 15 LEU D 19 5 5 HELIX 24 AC6 PRO D 20 PHE D 24 5 5 HELIX 25 AC7 ASP D 26 THR D 43 1 18 HELIX 26 AC8 PRO D 50 SER D 74 1 25 HELIX 27 AC9 SER D 78 THR D 92 1 15 HELIX 28 AD1 THR D 92 GLY D 111 1 20 HELIX 29 AD2 GLY D 111 THR D 128 1 18 HELIX 30 AD3 PRO D 129 ARG D 133 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000