HEADER HYDROLASE/HYDROLASE INHIBITOR 13-AUG-18 6EE3 TITLE X-RAY CRYSTAL STRUCTURE OF PF-M1 IN COMPLEX WITH INHIBITOR (6K) AND TITLE 2 CATALYTIC ZINC ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: M1 FAMILY AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 196 TO 1084; COMPND 5 SYNONYM: PFA-M1; COMPND 6 EC: 3.4.11.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE FCB1 / SOURCE 3 COLUMBIA); SOURCE 4 ORGANISM_TAXID: 186763; SOURCE 5 STRAIN: ISOLATE FCB1 / COLUMBIA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PTRCHIS-2B KEYWDS M1 ALANYL-AMINOPEPTIDASE, PROTEASE, INHIBITOR, HYDROXAMIC ACID, KEYWDS 2 HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.DRINKWATER,S.MCGOWAN REVDAT 4 13-MAR-24 6EE3 1 LINK REVDAT 3 01-JAN-20 6EE3 1 REMARK REVDAT 2 24-APR-19 6EE3 1 JRNL REVDAT 1 26-DEC-18 6EE3 0 JRNL AUTH N.B.VINH,N.DRINKWATER,T.R.MALCOLM,M.KASSIOU,L.LUCANTONI, JRNL AUTH 2 P.M.GRIN,G.S.BUTLER,S.DUFFY,C.M.OVERALL,V.M.AVERY, JRNL AUTH 3 P.J.SCAMMELLS,S.MCGOWAN JRNL TITL HYDROXAMIC ACID INHIBITORS PROVIDE CROSS-SPECIES INHIBITION JRNL TITL 2 OF PLASMODIUM M1 AND M17 AMINOPEPTIDASES. JRNL REF J. MED. CHEM. V. 62 622 2019 JRNL REFN ISSN 1520-4804 JRNL PMID 30537832 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01310 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 86961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 4390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4157 - 5.6519 1.00 2950 177 0.1683 0.1764 REMARK 3 2 5.6519 - 4.4872 1.00 2850 154 0.1267 0.1436 REMARK 3 3 4.4872 - 3.9204 1.00 2804 145 0.1170 0.1644 REMARK 3 4 3.9204 - 3.5621 1.00 2792 152 0.1199 0.1459 REMARK 3 5 3.5621 - 3.3068 1.00 2810 128 0.1251 0.1524 REMARK 3 6 3.3068 - 3.1119 1.00 2774 139 0.1360 0.1860 REMARK 3 7 3.1119 - 2.9561 1.00 2778 145 0.1445 0.2019 REMARK 3 8 2.9561 - 2.8274 1.00 2780 151 0.1470 0.2123 REMARK 3 9 2.8274 - 2.7186 1.00 2733 145 0.1549 0.2075 REMARK 3 10 2.7186 - 2.6248 1.00 2758 153 0.1538 0.2034 REMARK 3 11 2.6248 - 2.5427 1.00 2751 141 0.1503 0.2008 REMARK 3 12 2.5427 - 2.4700 1.00 2711 164 0.1499 0.2081 REMARK 3 13 2.4700 - 2.4050 1.00 2760 133 0.1503 0.2362 REMARK 3 14 2.4050 - 2.3463 1.00 2752 142 0.1523 0.1921 REMARK 3 15 2.3463 - 2.2930 1.00 2738 143 0.1542 0.2174 REMARK 3 16 2.2930 - 2.2442 1.00 2737 150 0.1539 0.1945 REMARK 3 17 2.2442 - 2.1993 1.00 2740 116 0.1504 0.2102 REMARK 3 18 2.1993 - 2.1578 1.00 2735 165 0.1478 0.2064 REMARK 3 19 2.1578 - 2.1193 1.00 2729 146 0.1529 0.2023 REMARK 3 20 2.1193 - 2.0834 1.00 2664 164 0.1556 0.2015 REMARK 3 21 2.0834 - 2.0498 1.00 2763 146 0.1635 0.2331 REMARK 3 22 2.0498 - 2.0182 1.00 2723 166 0.1712 0.2128 REMARK 3 23 2.0182 - 1.9885 1.00 2726 138 0.1767 0.2033 REMARK 3 24 1.9885 - 1.9605 1.00 2735 131 0.1780 0.2335 REMARK 3 25 1.9605 - 1.9340 1.00 2719 154 0.1873 0.2227 REMARK 3 26 1.9340 - 1.9089 1.00 2686 146 0.2004 0.2742 REMARK 3 27 1.9089 - 1.8851 1.00 2739 138 0.1993 0.2232 REMARK 3 28 1.8851 - 1.8623 1.00 2722 153 0.2151 0.2613 REMARK 3 29 1.8623 - 1.8407 1.00 2718 138 0.2182 0.3172 REMARK 3 30 1.8407 - 1.8200 0.99 2694 127 0.2332 0.2808 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7533 REMARK 3 ANGLE : 1.208 10224 REMARK 3 CHIRALITY : 0.110 1130 REMARK 3 PLANARITY : 0.006 1306 REMARK 3 DIHEDRAL : 12.987 2866 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 92.7083 112.8746 10.5153 REMARK 3 T TENSOR REMARK 3 T11: 0.0609 T22: 0.0791 REMARK 3 T33: 0.0595 T12: -0.0077 REMARK 3 T13: 0.0026 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.2466 L22: 0.5331 REMARK 3 L33: 0.3385 L12: -0.0813 REMARK 3 L13: -0.0404 L23: 0.0938 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: 0.0040 S13: 0.0081 REMARK 3 S21: -0.0052 S22: 0.0021 S23: -0.0122 REMARK 3 S31: -0.0054 S32: 0.0104 S33: 0.0233 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EE3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236036. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SILICON 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87047 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 54.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.18200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.99600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% (V/V) PEG 8000, 10% (V/V) REMARK 280 GLYCEROL, 0.1 M TRIS PH 8.5, 0.2 M MGCL2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.48000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.08000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.30050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.08000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.48000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.30050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 LYS A 252 CE NZ REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 GLU A 348 CD OE1 OE2 REMARK 470 LYS A 407 CD CE NZ REMARK 470 ASP A 445 CG OD1 OD2 REMARK 470 LYS A 608 CD CE NZ REMARK 470 LYS A 657 CE NZ REMARK 470 GLU A 663 CG CD OE1 OE2 REMARK 470 LYS A 664 CG CD CE NZ REMARK 470 LYS A 682 CG CD CE NZ REMARK 470 GLU A 683 CG CD OE1 OE2 REMARK 470 LYS A 785 CD CE NZ REMARK 470 LYS A 790 CE NZ REMARK 470 HIS A 815 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 941 CE NZ REMARK 470 LYS A 973 CG CD CE NZ REMARK 470 LYS A 980 CG CD CE NZ REMARK 470 LYS A1030 NZ REMARK 470 LYS A1075 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 274 -42.16 -136.13 REMARK 500 LYS A 311 -113.59 57.41 REMARK 500 VAL A 459 -150.49 -131.87 REMARK 500 GLU A 463 34.77 -86.69 REMARK 500 LEU A 475 -33.32 -131.51 REMARK 500 ASN A 505 -62.13 -95.95 REMARK 500 THR A 508 -165.05 -112.44 REMARK 500 SER A 549 -68.25 -94.06 REMARK 500 PHE A 736 74.52 56.42 REMARK 500 VAL A 986 -54.31 -122.54 REMARK 500 LYS A 988 -135.81 53.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2476 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A2477 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A2478 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A2479 DISTANCE = 7.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1106 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 250 O REMARK 620 2 HOH A1457 O 90.4 REMARK 620 3 HOH A1671 O 82.5 96.9 REMARK 620 4 HOH A1679 O 172.7 86.7 91.2 REMARK 620 5 HOH A1777 O 87.8 90.5 167.9 98.9 REMARK 620 6 HOH A1944 O 91.4 171.8 91.3 92.5 81.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 496 NE2 REMARK 620 2 HIS A 500 NE2 99.9 REMARK 620 3 GLU A 519 OE1 101.4 100.2 REMARK 620 4 J4V A1102 O 108.2 149.2 86.6 REMARK 620 5 J4V A1102 OAT 95.7 89.9 158.3 75.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1109 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A1083 OD1 REMARK 620 2 HOH A1271 O 97.6 REMARK 620 3 HOH A1332 O 80.7 174.6 REMARK 620 4 HOH A1740 O 82.4 80.2 94.4 REMARK 620 5 HOH A1962 O 96.7 101.0 84.3 178.5 REMARK 620 6 HOH A2311 O 164.4 97.7 84.4 103.4 77.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1107 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1296 O REMARK 620 2 HOH A1576 O 94.8 REMARK 620 3 HOH A1922 O 99.3 94.2 REMARK 620 4 HOH A2129 O 87.4 90.6 171.4 REMARK 620 5 HOH A2343 O 168.5 94.2 87.2 85.3 REMARK 620 6 HOH A2472 O 91.3 168.3 74.9 99.7 81.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1108 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1279 O REMARK 620 2 HOH A1386 O 89.9 REMARK 620 3 HOH A1793 O 92.2 87.8 REMARK 620 4 HOH A2211 O 87.2 176.4 94.5 REMARK 620 5 HOH A2341 O 172.4 97.2 85.4 85.8 REMARK 620 6 HOH A2382 O 96.0 90.7 171.6 87.4 86.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J4V A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1109 DBREF 6EE3 A 196 1084 UNP O96935 AMP1_PLAFQ 196 1084 SEQADV 6EE3 GLN A 213 UNP O96935 ASN 213 ENGINEERED MUTATION SEQADV 6EE3 GLN A 223 UNP O96935 ASN 223 ENGINEERED MUTATION SEQADV 6EE3 PRO A 378 UNP O96935 HIS 378 ENGINEERED MUTATION SEQADV 6EE3 GLN A 501 UNP O96935 ASN 501 ENGINEERED MUTATION SEQADV 6EE3 GLN A 745 UNP O96935 ASN 745 ENGINEERED MUTATION SEQADV 6EE3 GLN A 795 UNP O96935 ASN 795 ENGINEERED MUTATION SEQADV 6EE3 GLN A 1069 UNP O96935 ASN 1069 ENGINEERED MUTATION SEQRES 1 A 889 PRO LYS ILE HIS TYR ARG LYS ASP TYR LYS PRO SER GLY SEQRES 2 A 889 PHE ILE ILE ASN GLN VAL THR LEU ASN ILE ASN ILE HIS SEQRES 3 A 889 ASP GLN GLU THR ILE VAL ARG SER VAL LEU ASP MET ASP SEQRES 4 A 889 ILE SER LYS HIS ASN VAL GLY GLU ASP LEU VAL PHE ASP SEQRES 5 A 889 GLY VAL GLY LEU LYS ILE ASN GLU ILE SER ILE ASN ASN SEQRES 6 A 889 LYS LYS LEU VAL GLU GLY GLU GLU TYR THR TYR ASP ASN SEQRES 7 A 889 GLU PHE LEU THR ILE PHE SER LYS PHE VAL PRO LYS SER SEQRES 8 A 889 LYS PHE ALA PHE SER SER GLU VAL ILE ILE HIS PRO GLU SEQRES 9 A 889 THR ASN TYR ALA LEU THR GLY LEU TYR LYS SER LYS ASN SEQRES 10 A 889 ILE ILE VAL SER GLN CYS GLU ALA THR GLY PHE ARG ARG SEQRES 11 A 889 ILE THR PHE PHE ILE ASP ARG PRO ASP MET MET ALA LYS SEQRES 12 A 889 TYR ASP VAL THR VAL THR ALA ASP LYS GLU LYS TYR PRO SEQRES 13 A 889 VAL LEU LEU SER ASN GLY ASP LYS VAL ASN GLU PHE GLU SEQRES 14 A 889 ILE PRO GLY GLY ARG HIS GLY ALA ARG PHE ASN ASP PRO SEQRES 15 A 889 PRO LEU LYS PRO CYS TYR LEU PHE ALA VAL VAL ALA GLY SEQRES 16 A 889 ASP LEU LYS HIS LEU SER ALA THR TYR ILE THR LYS TYR SEQRES 17 A 889 THR LYS LYS LYS VAL GLU LEU TYR VAL PHE SER GLU GLU SEQRES 18 A 889 LYS TYR VAL SER LYS LEU GLN TRP ALA LEU GLU CYS LEU SEQRES 19 A 889 LYS LYS SER MET ALA PHE ASP GLU ASP TYR PHE GLY LEU SEQRES 20 A 889 GLU TYR ASP LEU SER ARG LEU ASN LEU VAL ALA VAL SER SEQRES 21 A 889 ASP PHE ASN VAL GLY ALA MET GLU ASN LYS GLY LEU ASN SEQRES 22 A 889 ILE PHE ASN ALA ASN SER LEU LEU ALA SER LYS LYS ASN SEQRES 23 A 889 SER ILE ASP PHE SER TYR ALA ARG ILE LEU THR VAL VAL SEQRES 24 A 889 GLY HIS GLU TYR PHE HIS GLN TYR THR GLY ASN ARG VAL SEQRES 25 A 889 THR LEU ARG ASP TRP PHE GLN LEU THR LEU LYS GLU GLY SEQRES 26 A 889 LEU THR VAL HIS ARG GLU ASN LEU PHE SER GLU GLU MET SEQRES 27 A 889 THR LYS THR VAL THR THR ARG LEU SER HIS VAL ASP LEU SEQRES 28 A 889 LEU ARG SER VAL GLN PHE LEU GLU ASP SER SER PRO LEU SEQRES 29 A 889 SER HIS PRO ILE ARG PRO GLU SER TYR VAL SER MET GLU SEQRES 30 A 889 ASN PHE TYR THR THR THR VAL TYR ASP LYS GLY SER GLU SEQRES 31 A 889 VAL MET ARG MET TYR LEU THR ILE LEU GLY GLU GLU TYR SEQRES 32 A 889 TYR LYS LYS GLY PHE ASP ILE TYR ILE LYS LYS ASN ASP SEQRES 33 A 889 GLY ASN THR ALA THR CYS GLU ASP PHE ASN TYR ALA MET SEQRES 34 A 889 GLU GLN ALA TYR LYS MET LYS LYS ALA ASP ASN SER ALA SEQRES 35 A 889 ASN LEU ASN GLN TYR LEU LEU TRP PHE SER GLN SER GLY SEQRES 36 A 889 THR PRO HIS VAL SER PHE LYS TYR ASN TYR ASP ALA GLU SEQRES 37 A 889 LYS LYS GLN TYR SER ILE HIS VAL ASN GLN TYR THR LYS SEQRES 38 A 889 PRO ASP GLU ASN GLN LYS GLU LYS LYS PRO LEU PHE ILE SEQRES 39 A 889 PRO ILE SER VAL GLY LEU ILE ASN PRO GLU ASN GLY LYS SEQRES 40 A 889 GLU MET ILE SER GLN THR THR LEU GLU LEU THR LYS GLU SEQRES 41 A 889 SER ASP THR PHE VAL PHE ASN ASN ILE ALA VAL LYS PRO SEQRES 42 A 889 ILE PRO SER LEU PHE ARG GLY PHE SER ALA PRO VAL TYR SEQRES 43 A 889 ILE GLU ASP GLN LEU THR ASP GLU GLU ARG ILE LEU LEU SEQRES 44 A 889 LEU LYS TYR ASP SER ASP ALA PHE VAL ARG TYR ASN SER SEQRES 45 A 889 CYS THR ASN ILE TYR MET LYS GLN ILE LEU MET ASN TYR SEQRES 46 A 889 ASN GLU PHE LEU LYS ALA LYS ASN GLU LYS LEU GLU SER SEQRES 47 A 889 PHE GLN LEU THR PRO VAL ASN ALA GLN PHE ILE ASP ALA SEQRES 48 A 889 ILE LYS TYR LEU LEU GLU ASP PRO HIS ALA ASP ALA GLY SEQRES 49 A 889 PHE LYS SER TYR ILE VAL SER LEU PRO GLN ASP ARG TYR SEQRES 50 A 889 ILE ILE ASN PHE VAL SER ASN LEU ASP THR ASP VAL LEU SEQRES 51 A 889 ALA ASP THR LYS GLU TYR ILE TYR LYS GLN ILE GLY ASP SEQRES 52 A 889 LYS LEU ASN ASP VAL TYR TYR LYS MET PHE LYS SER LEU SEQRES 53 A 889 GLU ALA LYS ALA ASP ASP LEU THR TYR PHE ASN ASP GLU SEQRES 54 A 889 SER HIS VAL ASP PHE ASP GLN MET ASN MET ARG THR LEU SEQRES 55 A 889 ARG ASN THR LEU LEU SER LEU LEU SER LYS ALA GLN TYR SEQRES 56 A 889 PRO ASN ILE LEU ASN GLU ILE ILE GLU HIS SER LYS SER SEQRES 57 A 889 PRO TYR PRO SER ASN TRP LEU THR SER LEU SER VAL SER SEQRES 58 A 889 ALA TYR PHE ASP LYS TYR PHE GLU LEU TYR ASP LYS THR SEQRES 59 A 889 TYR LYS LEU SER LYS ASP ASP GLU LEU LEU LEU GLN GLU SEQRES 60 A 889 TRP LEU LYS THR VAL SER ARG SER ASP ARG LYS ASP ILE SEQRES 61 A 889 TYR GLU ILE LEU LYS LYS LEU GLU ASN GLU VAL LEU LYS SEQRES 62 A 889 ASP SER LYS ASN PRO ASN ASP ILE ARG ALA VAL TYR LEU SEQRES 63 A 889 PRO PHE THR ASN ASN LEU ARG ARG PHE HIS ASP ILE SER SEQRES 64 A 889 GLY LYS GLY TYR LYS LEU ILE ALA GLU VAL ILE THR LYS SEQRES 65 A 889 THR ASP LYS PHE ASN PRO MET VAL ALA THR GLN LEU CYS SEQRES 66 A 889 GLU PRO PHE LYS LEU TRP ASN LYS LEU ASP THR LYS ARG SEQRES 67 A 889 GLN GLU LEU MET LEU ASN GLU MET ASN THR MET LEU GLN SEQRES 68 A 889 GLU PRO GLN ILE SER ASN ASN LEU LYS GLU TYR LEU LEU SEQRES 69 A 889 ARG LEU THR ASN LYS HET ZN A1101 1 HET J4V A1102 33 HET PO4 A1103 5 HET GOL A1104 6 HET GOL A1105 6 HET MG A1106 1 HET MG A1107 1 HET MG A1108 1 HET MG A1109 1 HETNAM ZN ZINC ION HETNAM J4V (1R,2R,3S,5R,7R)-N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(3', HETNAM 2 J4V 4',5'-TRIFLUORO[1,1'-BIPHENYL]-4-YL) HETNAM 3 J4V ETHYL]TRICYCLO[3.3.1.1~3,7~]DECANE-2-CARBOXAMIDE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 J4V C25 H25 F3 N2 O3 FORMUL 4 PO4 O4 P 3- FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 MG 4(MG 2+) FORMUL 11 HOH *1279(H2 O) HELIX 1 AA1 LYS A 202 TYR A 204 5 3 HELIX 2 AA2 SER A 280 VAL A 283 5 4 HELIX 3 AA3 HIS A 297 ASN A 301 5 5 HELIX 4 AA4 GLY A 322 ILE A 326 5 5 HELIX 5 AA5 PRO A 381 PHE A 385 5 5 HELIX 6 AA6 LYS A 417 LYS A 421 5 5 HELIX 7 AA7 LEU A 422 GLY A 441 1 20 HELIX 8 AA8 ASN A 473 LEU A 475 5 3 HELIX 9 AA9 ASP A 484 HIS A 500 1 17 HELIX 10 AB1 ASP A 511 PHE A 513 5 3 HELIX 11 AB2 GLN A 514 LYS A 535 1 22 HELIX 12 AB3 VAL A 537 SER A 556 1 20 HELIX 13 AB4 SER A 570 PHE A 574 5 5 HELIX 14 AB5 THR A 576 ASP A 611 1 36 HELIX 15 AB6 THR A 616 ALA A 633 1 18 HELIX 16 AB7 ASN A 640 TYR A 642 5 3 HELIX 17 AB8 LEU A 643 GLN A 648 1 6 HELIX 18 AB9 THR A 747 ASP A 758 1 12 HELIX 19 AC1 ASP A 760 LYS A 790 1 31 HELIX 20 AC2 ASN A 800 GLU A 812 1 13 HELIX 21 AC3 ASP A 817 VAL A 825 1 9 HELIX 22 AC4 GLN A 829 ILE A 834 1 6 HELIX 23 AC5 ASN A 835 VAL A 837 5 3 HELIX 24 AC6 ASP A 841 LEU A 871 1 31 HELIX 25 AC7 LEU A 871 ASP A 876 1 6 HELIX 26 AC8 ASP A 888 ALA A 908 1 21 HELIX 27 AC9 ASN A 912 SER A 921 1 10 HELIX 28 AD1 TYR A 925 SER A 936 1 12 HELIX 29 AD2 ALA A 937 PHE A 939 5 3 HELIX 30 AD3 LYS A 941 LYS A 954 1 14 HELIX 31 AD4 ASP A 956 ARG A 969 1 14 HELIX 32 AD5 ASP A 974 VAL A 986 1 13 HELIX 33 AD6 ASN A 992 ASN A 1005 1 14 HELIX 34 AD7 ASN A 1006 HIS A 1011 1 6 HELIX 35 AD8 GLY A 1015 LYS A 1030 1 16 HELIX 36 AD9 ASN A 1032 LEU A 1039 1 8 HELIX 37 AE1 CYS A 1040 LEU A 1049 5 10 HELIX 38 AE2 ASP A 1050 GLN A 1066 1 17 HELIX 39 AE3 SER A 1071 THR A 1082 1 12 SHEET 1 AA1 2 HIS A 199 TYR A 200 0 SHEET 2 AA1 2 SER A 567 TYR A 568 -1 O TYR A 568 N HIS A 199 SHEET 1 AA2 8 LYS A 261 LYS A 262 0 SHEET 2 AA2 8 LYS A 252 ILE A 258 -1 N ILE A 258 O LYS A 261 SHEET 3 AA2 8 PHE A 288 ILE A 296 -1 O GLU A 293 N ASN A 254 SHEET 4 AA2 8 THR A 225 ILE A 235 -1 N LEU A 231 O PHE A 290 SHEET 5 AA2 8 PHE A 209 ILE A 220 -1 N ASN A 217 O ARG A 228 SHEET 6 AA2 8 ALA A 337 ASP A 346 1 O LYS A 338 N VAL A 214 SHEET 7 AA2 8 ARG A 369 LYS A 380 -1 O PHE A 374 N VAL A 341 SHEET 8 AA2 8 ASP A 358 ILE A 365 -1 N VAL A 360 O ARG A 373 SHEET 1 AA3 3 LEU A 244 ASP A 247 0 SHEET 2 AA3 3 PHE A 275 ILE A 278 -1 O ILE A 278 N LEU A 244 SHEET 3 AA3 3 TYR A 269 TYR A 271 -1 N THR A 270 O THR A 277 SHEET 1 AA4 4 GLY A 306 SER A 310 0 SHEET 2 AA4 4 ILE A 313 GLN A 317 -1 O ILE A 313 N SER A 310 SHEET 3 AA4 4 VAL A 387 GLY A 390 -1 O ALA A 389 N ILE A 314 SHEET 4 AA4 4 VAL A 352 SER A 355 -1 N LEU A 354 O VAL A 388 SHEET 1 AA5 5 LEU A 392 ILE A 400 0 SHEET 2 AA5 5 LYS A 407 GLU A 415 -1 O VAL A 408 N TYR A 399 SHEET 3 AA5 5 ARG A 448 VAL A 454 1 O LEU A 451 N PHE A 413 SHEET 4 AA5 5 LEU A 467 ASN A 471 1 O PHE A 470 N VAL A 452 SHEET 5 AA5 5 ALA A 461 MET A 462 -1 N MET A 462 O ILE A 469 SHEET 1 AA6 2 THR A 508 LEU A 509 0 SHEET 2 AA6 2 THR A 614 ALA A 615 1 O ALA A 615 N THR A 508 SHEET 1 AA7 4 SER A 716 PHE A 721 0 SHEET 2 AA7 4 GLN A 666 TYR A 674 -1 N TYR A 667 O PHE A 721 SHEET 3 AA7 4 HIS A 653 ASP A 661 -1 N LYS A 657 O HIS A 670 SHEET 4 AA7 4 TYR A 741 GLU A 743 1 O TYR A 741 N VAL A 654 SHEET 1 AA8 3 THR A 708 LEU A 712 0 SHEET 2 AA8 3 ILE A 689 ILE A 696 -1 N ILE A 689 O LEU A 712 SHEET 3 AA8 3 ILE A 729 LEU A 732 -1 O SER A 731 N GLY A 694 LINK O GLY A 250 MG MG A1106 1555 1555 2.03 LINK NE2 HIS A 496 ZN ZN A1101 1555 1555 2.08 LINK NE2 HIS A 500 ZN ZN A1101 1555 1555 2.09 LINK OE1 GLU A 519 ZN ZN A1101 1555 1555 2.07 LINK OD1 ASN A1083 MG MG A1109 1555 1555 2.01 LINK ZN ZN A1101 O J4V A1102 1555 1555 2.10 LINK ZN ZN A1101 OAT J4V A1102 1555 1555 2.21 LINK MG MG A1106 O HOH A1457 1555 1555 2.10 LINK MG MG A1106 O HOH A1671 1555 1555 2.21 LINK MG MG A1106 O HOH A1679 1555 1555 2.09 LINK MG MG A1106 O HOH A1777 1555 1555 2.10 LINK MG MG A1106 O HOH A1944 1555 1555 2.17 LINK MG MG A1107 O HOH A1296 1555 1555 2.39 LINK MG MG A1107 O HOH A1576 1555 1555 2.10 LINK MG MG A1107 O HOH A1922 1555 1555 2.18 LINK MG MG A1107 O HOH A2129 1555 1555 2.10 LINK MG MG A1107 O HOH A2343 1555 1555 2.03 LINK MG MG A1107 O HOH A2472 1555 1555 2.22 LINK MG MG A1108 O HOH A1279 1555 1555 2.31 LINK MG MG A1108 O HOH A1386 1555 1555 2.17 LINK MG MG A1108 O HOH A1793 1555 1555 2.18 LINK MG MG A1108 O HOH A2211 1555 1555 2.26 LINK MG MG A1108 O HOH A2341 1555 1555 2.17 LINK MG MG A1108 O HOH A2382 1555 1555 2.07 LINK MG MG A1109 O HOH A1271 1555 1555 2.30 LINK MG MG A1109 O HOH A1332 1555 1555 2.04 LINK MG MG A1109 O HOH A1740 1555 1555 2.29 LINK MG MG A1109 O HOH A1962 1555 1555 2.04 LINK MG MG A1109 O HOH A2311 1555 1555 2.12 CISPEP 1 GLU A 319 ALA A 320 0 -1.60 SITE 1 AC1 4 HIS A 496 HIS A 500 GLU A 519 J4V A1102 SITE 1 AC2 24 THR A 305 GLN A 317 GLU A 319 ALA A 320 SITE 2 AC2 24 ASN A 458 VAL A 459 GLY A 460 ALA A 461 SITE 3 AC2 24 GLU A 463 ARG A 489 HIS A 496 GLU A 497 SITE 4 AC2 24 HIS A 500 GLU A 519 GLU A 572 TYR A 575 SITE 5 AC2 24 TYR A 580 MET A1034 ZN A1101 HOH A1264 SITE 6 AC2 24 HOH A1415 HOH A1597 HOH A1728 HOH A2284 SITE 1 AC3 6 PRO A 698 GLU A 699 ASN A 700 TYR A 757 SITE 2 AC3 6 HOH A1777 HOH A2139 SITE 1 AC4 9 LYS A 479 TYR A 880 VAL A 887 ASP A 888 SITE 2 AC4 9 GLN A 891 ARG A 895 TYR A 925 HOH A1528 SITE 3 AC4 9 HOH A1823 SITE 1 AC5 7 SER A 927 LEU A 930 SER A 934 THR A 966 SITE 2 AC5 7 ARG A 969 HOH A1206 HOH A1348 SITE 1 AC6 6 GLY A 250 HOH A1457 HOH A1671 HOH A1679 SITE 2 AC6 6 HOH A1777 HOH A1944 SITE 1 AC7 6 HOH A1296 HOH A1576 HOH A1922 HOH A2129 SITE 2 AC7 6 HOH A2343 HOH A2472 SITE 1 AC8 7 GLU A 957 HOH A1279 HOH A1386 HOH A1793 SITE 2 AC8 7 HOH A2211 HOH A2341 HOH A2382 SITE 1 AC9 7 ASN A1083 HOH A1271 HOH A1332 HOH A1740 SITE 2 AC9 7 HOH A1962 HOH A2311 HOH A2323 CRYST1 74.960 108.601 118.160 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013340 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009208 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008463 0.00000