HEADER ISOMERASE 15-AUG-18 6EEP TITLE CRYSTAL STRUCTURE OF RIBOSE-5-PHOSPHATE ISOMERASE FROM LEGIONELLA TITLE 2 PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE-5-PHOSPHATE ISOMERASE A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHORIBOISOMERASE A,PRI; COMPND 5 EC: 5.3.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA SOURCE 3 (STRAIN PHILADELPHIA 1 / ATCC 33152 / DSM 7513); SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 6 GENE: RPIA, LPG0094; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: LEPNA.00944.A.B1 KEYWDS SSGCID, PENTOSE PHOSPHATE PATHWAY, RIBOSE-5-PHOSPHATE, RIBULOSE-5- KEYWDS 2 PHOSPHATE, CARBOHYDRATE DEGRADATION, STRUCTURAL GENOMICS, SEATTLE KEYWDS 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 11-OCT-23 6EEP 1 LINK REVDAT 1 29-AUG-18 6EEP 0 JRNL AUTH K.N.BRAVERMAN,D.M.DRANOW,S.J.MAYCLIN,D.D.LORIMER, JRNL AUTH 2 P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF RIBOSE-5-PHOSPHATE ISOMERASE FROM JRNL TITL 2 LEGIONELLA PNEUMOPHILA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3219) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 36108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.120 REMARK 3 FREE R VALUE TEST SET COUNT : 2210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.1953 - 4.6574 0.99 2323 133 0.1355 0.1779 REMARK 3 2 4.6574 - 3.6984 0.98 2219 140 0.1232 0.1940 REMARK 3 3 3.6984 - 3.2314 0.97 2230 140 0.1446 0.1843 REMARK 3 4 3.2314 - 2.9362 0.97 2209 141 0.1662 0.2272 REMARK 3 5 2.9362 - 2.7259 0.97 2200 128 0.1711 0.2122 REMARK 3 6 2.7259 - 2.5652 0.96 2160 155 0.1691 0.2530 REMARK 3 7 2.5652 - 2.4368 0.96 2164 147 0.1758 0.2441 REMARK 3 8 2.4368 - 2.3307 0.95 2126 150 0.1792 0.2370 REMARK 3 9 2.3307 - 2.2410 0.94 2141 118 0.1606 0.2347 REMARK 3 10 2.2410 - 2.1637 0.94 2142 136 0.1763 0.2052 REMARK 3 11 2.1637 - 2.0961 0.93 2074 136 0.1711 0.2593 REMARK 3 12 2.0961 - 2.0362 0.92 2067 151 0.1822 0.2496 REMARK 3 13 2.0362 - 1.9826 0.91 2027 140 0.1844 0.2488 REMARK 3 14 1.9826 - 1.9342 0.90 2035 134 0.2010 0.2308 REMARK 3 15 1.9342 - 1.8903 0.85 1924 122 0.2185 0.2910 REMARK 3 16 1.8903 - 1.8500 0.83 1857 139 0.2259 0.2868 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 44 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5246 -7.3254 12.2857 REMARK 3 T TENSOR REMARK 3 T11: 0.1860 T22: 0.1324 REMARK 3 T33: 0.1843 T12: -0.0225 REMARK 3 T13: -0.0208 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 4.1874 L22: 6.6861 REMARK 3 L33: 3.2344 L12: -0.5883 REMARK 3 L13: -3.6646 L23: 0.6636 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: 0.1301 S13: -0.6218 REMARK 3 S21: 0.1049 S22: -0.2388 S23: -0.0208 REMARK 3 S31: 0.0566 S32: -0.0355 S33: 0.1569 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0306 -14.7368 16.3365 REMARK 3 T TENSOR REMARK 3 T11: 0.2917 T22: 0.1866 REMARK 3 T33: 0.2619 T12: -0.0096 REMARK 3 T13: 0.0016 T23: 0.0693 REMARK 3 L TENSOR REMARK 3 L11: 5.1376 L22: 0.3655 REMARK 3 L33: 3.1710 L12: -0.3399 REMARK 3 L13: 3.9360 L23: -0.0054 REMARK 3 S TENSOR REMARK 3 S11: 0.3593 S12: -0.5783 S13: -0.8516 REMARK 3 S21: 0.1390 S22: -0.0589 S23: -0.0030 REMARK 3 S31: 0.3301 S32: -0.1830 S33: -0.2573 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3472 5.1766 23.7097 REMARK 3 T TENSOR REMARK 3 T11: 0.2138 T22: 0.2256 REMARK 3 T33: 0.1909 T12: 0.0007 REMARK 3 T13: -0.0085 T23: -0.0550 REMARK 3 L TENSOR REMARK 3 L11: 2.5906 L22: 0.6814 REMARK 3 L33: 0.9889 L12: -0.3793 REMARK 3 L13: 0.8418 L23: -0.0660 REMARK 3 S TENSOR REMARK 3 S11: -0.2071 S12: -0.4617 S13: 0.3530 REMARK 3 S21: 0.2388 S22: 0.0701 S23: -0.0020 REMARK 3 S31: -0.2155 S32: -0.0226 S33: 0.1324 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 148 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1412 11.4093 13.3467 REMARK 3 T TENSOR REMARK 3 T11: 0.2473 T22: 0.1510 REMARK 3 T33: 0.2419 T12: 0.0088 REMARK 3 T13: -0.0711 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 5.9224 L22: 5.2776 REMARK 3 L33: 4.9498 L12: -1.6790 REMARK 3 L13: -2.8746 L23: 1.2823 REMARK 3 S TENSOR REMARK 3 S11: 0.0924 S12: -0.1136 S13: 0.6375 REMARK 3 S21: -0.3039 S22: 0.0138 S23: -0.3752 REMARK 3 S31: -0.7280 S32: 0.0669 S33: -0.1243 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 165 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4540 5.8959 25.3831 REMARK 3 T TENSOR REMARK 3 T11: 0.2377 T22: 0.2696 REMARK 3 T33: 0.2030 T12: 0.0110 REMARK 3 T13: -0.0198 T23: -0.0743 REMARK 3 L TENSOR REMARK 3 L11: 2.4276 L22: 1.3416 REMARK 3 L33: 1.7121 L12: -0.4972 REMARK 3 L13: 0.5917 L23: -0.2259 REMARK 3 S TENSOR REMARK 3 S11: -0.1028 S12: -0.5682 S13: 0.3360 REMARK 3 S21: 0.2119 S22: -0.0512 S23: -0.0127 REMARK 3 S31: -0.2239 S32: -0.0934 S33: 0.1549 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 203 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7546 1.6022 34.9850 REMARK 3 T TENSOR REMARK 3 T11: 0.3728 T22: 0.5481 REMARK 3 T33: 0.3269 T12: 0.0258 REMARK 3 T13: -0.1591 T23: -0.0473 REMARK 3 L TENSOR REMARK 3 L11: 3.8729 L22: 8.1548 REMARK 3 L33: 4.1230 L12: 5.5175 REMARK 3 L13: 0.6387 L23: 0.9445 REMARK 3 S TENSOR REMARK 3 S11: 0.6588 S12: -1.6555 S13: -0.3469 REMARK 3 S21: 1.2347 S22: -0.6478 S23: -0.7948 REMARK 3 S31: 0.1027 S32: 0.2376 S33: -0.0076 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.9548 -1.5117 -0.4299 REMARK 3 T TENSOR REMARK 3 T11: 0.1512 T22: 0.2622 REMARK 3 T33: 0.3212 T12: -0.0322 REMARK 3 T13: -0.0439 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 7.5726 L22: 7.5627 REMARK 3 L33: 6.8166 L12: -0.7708 REMARK 3 L13: -1.0181 L23: -1.0211 REMARK 3 S TENSOR REMARK 3 S11: 0.1304 S12: -0.2105 S13: -0.3240 REMARK 3 S21: -0.5176 S22: -0.1243 S23: 0.8957 REMARK 3 S31: 0.2739 S32: -0.6647 S33: 0.0691 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0842 11.8290 1.9860 REMARK 3 T TENSOR REMARK 3 T11: 0.1770 T22: 0.2108 REMARK 3 T33: 0.3531 T12: 0.0322 REMARK 3 T13: -0.0539 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 7.8631 L22: 2.2661 REMARK 3 L33: 7.8367 L12: -3.9943 REMARK 3 L13: -0.6347 L23: -0.3089 REMARK 3 S TENSOR REMARK 3 S11: -0.1139 S12: 0.3095 S13: 0.4924 REMARK 3 S21: 0.1381 S22: -0.0409 S23: 0.6451 REMARK 3 S31: -0.7111 S32: -0.4357 S33: 0.1018 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3970 7.5449 -3.7025 REMARK 3 T TENSOR REMARK 3 T11: 0.1842 T22: 0.1530 REMARK 3 T33: 0.1751 T12: 0.0304 REMARK 3 T13: -0.0181 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 5.4874 L22: 5.7498 REMARK 3 L33: 5.8373 L12: 0.3671 REMARK 3 L13: 0.5722 L23: -2.9717 REMARK 3 S TENSOR REMARK 3 S11: -0.1140 S12: 0.1272 S13: 0.4558 REMARK 3 S21: -0.2390 S22: 0.1378 S23: 0.3915 REMARK 3 S31: -0.3436 S32: -0.4097 S33: -0.0426 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0972 3.9768 -4.5351 REMARK 3 T TENSOR REMARK 3 T11: 0.2153 T22: 0.1551 REMARK 3 T33: 0.2092 T12: -0.0107 REMARK 3 T13: 0.0252 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 8.7255 L22: 7.3263 REMARK 3 L33: 5.4733 L12: -7.7105 REMARK 3 L13: 6.5676 L23: -6.1870 REMARK 3 S TENSOR REMARK 3 S11: 0.2284 S12: 0.4197 S13: -0.0678 REMARK 3 S21: -0.3122 S22: -0.2170 S23: -0.0111 REMARK 3 S31: -0.1923 S32: 0.6137 S33: -0.0302 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9764 14.3467 3.0929 REMARK 3 T TENSOR REMARK 3 T11: 0.2761 T22: 0.1337 REMARK 3 T33: 0.3258 T12: 0.0462 REMARK 3 T13: -0.0178 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 7.6970 L22: 1.5465 REMARK 3 L33: 2.9001 L12: 1.1425 REMARK 3 L13: 3.3596 L23: -0.8823 REMARK 3 S TENSOR REMARK 3 S11: -0.0945 S12: -0.1735 S13: 0.4678 REMARK 3 S21: -0.0459 S22: 0.0489 S23: 0.3600 REMARK 3 S31: -0.3012 S32: 0.0448 S33: -0.0177 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3885 -2.0742 12.6811 REMARK 3 T TENSOR REMARK 3 T11: 0.1425 T22: 0.1968 REMARK 3 T33: 0.1817 T12: -0.0144 REMARK 3 T13: 0.0046 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 5.9258 L22: 6.8726 REMARK 3 L33: 4.0208 L12: 0.2942 REMARK 3 L13: 0.2954 L23: -1.8579 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: -0.4445 S13: -0.1259 REMARK 3 S21: 0.3051 S22: 0.0588 S23: 0.4546 REMARK 3 S31: -0.0059 S32: -0.3402 S33: -0.0336 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0319 -2.3771 11.5697 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.1756 REMARK 3 T33: 0.1361 T12: -0.0190 REMARK 3 T13: 0.0346 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 3.8588 L22: 2.0658 REMARK 3 L33: 1.4567 L12: -0.1810 REMARK 3 L13: 1.1113 L23: -0.8289 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.1560 S13: -0.1121 REMARK 3 S21: 0.0682 S22: 0.0173 S23: 0.2343 REMARK 3 S31: 0.0872 S32: -0.2227 S33: -0.0133 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3442 -12.5772 19.1841 REMARK 3 T TENSOR REMARK 3 T11: 0.2573 T22: 0.2168 REMARK 3 T33: 0.2588 T12: -0.0338 REMARK 3 T13: -0.0075 T23: 0.0632 REMARK 3 L TENSOR REMARK 3 L11: 4.1960 L22: 3.6150 REMARK 3 L33: 6.1307 L12: 3.9065 REMARK 3 L13: -5.0337 L23: -4.6644 REMARK 3 S TENSOR REMARK 3 S11: 0.1052 S12: -0.3436 S13: -0.6887 REMARK 3 S21: -0.0793 S22: 0.0091 S23: -0.3005 REMARK 3 S31: 0.2926 S32: 0.0167 S33: -0.0210 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9163 -11.8332 8.9166 REMARK 3 T TENSOR REMARK 3 T11: 0.2648 T22: 0.1632 REMARK 3 T33: 0.2645 T12: 0.0448 REMARK 3 T13: 0.0570 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.5116 L22: 2.4338 REMARK 3 L33: 5.5769 L12: 0.0276 REMARK 3 L13: 0.1397 L23: 0.3664 REMARK 3 S TENSOR REMARK 3 S11: -0.0922 S12: 0.0304 S13: -0.4046 REMARK 3 S21: -0.2979 S22: -0.2321 S23: -0.1970 REMARK 3 S31: 0.7994 S32: 0.0964 S33: 0.3161 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7768 -5.4143 19.5444 REMARK 3 T TENSOR REMARK 3 T11: 0.2130 T22: 0.2237 REMARK 3 T33: 0.1636 T12: -0.0419 REMARK 3 T13: 0.0265 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 3.5564 L22: 1.5303 REMARK 3 L33: 2.3744 L12: -0.8365 REMARK 3 L13: 0.6107 L23: -0.7208 REMARK 3 S TENSOR REMARK 3 S11: 0.0606 S12: -0.4181 S13: -0.0457 REMARK 3 S21: 0.1615 S22: -0.0729 S23: 0.1120 REMARK 3 S31: 0.0495 S32: -0.2411 S33: 0.0124 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.9611 -1.0538 9.4031 REMARK 3 T TENSOR REMARK 3 T11: 0.2087 T22: 0.4319 REMARK 3 T33: 0.3903 T12: -0.0130 REMARK 3 T13: 0.0150 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 6.7987 L22: 8.5371 REMARK 3 L33: 5.0336 L12: 2.7976 REMARK 3 L13: 5.0609 L23: 4.7147 REMARK 3 S TENSOR REMARK 3 S11: 0.0554 S12: -0.6810 S13: 0.3844 REMARK 3 S21: 0.1423 S22: -0.4521 S23: 1.0189 REMARK 3 S31: 0.0110 S32: -1.5302 S33: 0.3914 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1184 -4.4823 24.3166 REMARK 3 T TENSOR REMARK 3 T11: 0.1490 T22: 0.2586 REMARK 3 T33: 0.1527 T12: 0.0307 REMARK 3 T13: 0.0308 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 5.2152 L22: 5.6019 REMARK 3 L33: 5.5445 L12: 1.3289 REMARK 3 L13: 2.4341 L23: 1.0053 REMARK 3 S TENSOR REMARK 3 S11: -0.1068 S12: -0.2656 S13: -0.1415 REMARK 3 S21: -0.0040 S22: 0.1527 S23: -0.3012 REMARK 3 S31: 0.0994 S32: 0.3146 S33: -0.0290 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4216 -5.6867 18.6395 REMARK 3 T TENSOR REMARK 3 T11: 0.1733 T22: 0.2682 REMARK 3 T33: 0.2272 T12: -0.0086 REMARK 3 T13: -0.0284 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 6.9659 L22: 4.2102 REMARK 3 L33: 7.2107 L12: -5.0591 REMARK 3 L13: -3.7397 L23: 4.3959 REMARK 3 S TENSOR REMARK 3 S11: -0.0704 S12: -0.2672 S13: -0.1126 REMARK 3 S21: 0.3033 S22: 0.0829 S23: -0.4357 REMARK 3 S31: 0.3980 S32: 0.4343 S33: -0.0284 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37853 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 32.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 4.117 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.24 REMARK 200 R MERGE FOR SHELL (I) : 0.54800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 4X84 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LEPNA.00944.A.B1.PS38423 AT 22.85 REMARK 280 MG/ML WAS MIXED 1:1 WITH MCSG1(B8): 25.5% (W/V) PEG-4,000, 15% REMARK 280 (V/V) GLYCEROL, 0.085 M TRIS BASE / HYDROCHLORIC, 0.17 M SODIUM REMARK 280 ACETATE, PH = 8.5. TRAY: 300294B8. PUCK: JVE-8, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.31500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.96500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.31500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.96500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 613 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 1 CG SD CE REMARK 470 GLN A 72 CG CD OE1 NE2 REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 MET B 1 CG SD CE REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 470 GLN B 72 CG CD OE1 NE2 REMARK 470 ARG B 87 CG CD NE CZ NH1 NH2 REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 613 DISTANCE = 6.29 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 185 O REMARK 620 2 ILE A 187 O 99.4 REMARK 620 3 VAL A 190 O 95.9 97.7 REMARK 620 4 HOH B 421 O 166.3 94.3 82.6 REMARK 620 5 HOH B 515 O 74.3 172.1 78.6 92.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 431 O REMARK 620 2 HOH A 459 O 86.0 REMARK 620 3 HOH A 467 O 88.3 85.6 REMARK 620 4 ASN B 185 O 167.5 85.9 81.6 REMARK 620 5 ILE B 187 O 89.5 95.3 177.6 100.7 REMARK 620 6 VAL B 190 O 83.5 161.0 78.3 101.5 100.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-LEPNA.00944.A RELATED DB: TARGETTRACK REMARK 900 RELATED ID: LEPNA.00944.A RELATED DB: TARGETTRACK DBREF 6EEP A 1 216 UNP Q5ZZB7 RPIA_LEGPH 1 216 DBREF 6EEP B 1 216 UNP Q5ZZB7 RPIA_LEGPH 1 216 SEQADV 6EEP HIS A -1 UNP Q5ZZB7 EXPRESSION TAG SEQADV 6EEP HIS A 0 UNP Q5ZZB7 EXPRESSION TAG SEQADV 6EEP HIS B -1 UNP Q5ZZB7 EXPRESSION TAG SEQADV 6EEP HIS B 0 UNP Q5ZZB7 EXPRESSION TAG SEQRES 1 A 218 HIS HIS MET SER GLU LEU LYS ILE LYS ALA ALA LYS ALA SEQRES 2 A 218 ALA ILE ALA TYR ILE GLU ASP ASP MET VAL ILE GLY VAL SEQRES 3 A 218 GLY THR GLY SER THR VAL ASN PHE PHE ILE LYS GLU LEU SEQRES 4 A 218 ALA ALA ILE LYS HIS LYS ILE GLU ALA CYS VAL ALA SER SEQRES 5 A 218 SER LYS ALA THR GLU ALA LEU LEU ARG ALA GLU GLY ILE SEQRES 6 A 218 PRO VAL ILE ASP LEU ASN SER VAL GLN ASP LEU PRO ILE SEQRES 7 A 218 TYR VAL ASP GLY ALA ASP GLU VAL ASN GLU ARG GLY GLU SEQRES 8 A 218 MET ILE LYS GLY GLY GLY GLY ALA LEU THR ARG GLU LYS SEQRES 9 A 218 ILE VAL ALA ASN VAL ALA THR GLN PHE ILE CYS ILE VAL SEQRES 10 A 218 ASP GLU SER LYS VAL VAL LYS ARG LEU GLY GLU PHE PRO SEQRES 11 A 218 VAL ALA VAL GLU VAL ILE PRO MET ALA ARG SER PHE VAL SEQRES 12 A 218 ALA ARG GLN ILE VAL LYS LEU GLY GLY ASP PRO GLU TYR SEQRES 13 A 218 ARG GLU GLY PHE VAL THR ASP ASN GLY ASN ILE ILE LEU SEQRES 14 A 218 ASP VAL PHE ASN LEU SER PHE SER THR PRO MET ALA LEU SEQRES 15 A 218 GLU ASP SER LEU ASN VAL ILE PRO GLY VAL VAL GLU ASN SEQRES 16 A 218 GLY VAL PHE ALA LYS ARG LEU ALA ASP LYS VAL LEU VAL SEQRES 17 A 218 ALA SER ALA SER GLY VAL ASN ASN LEU LYS SEQRES 1 B 218 HIS HIS MET SER GLU LEU LYS ILE LYS ALA ALA LYS ALA SEQRES 2 B 218 ALA ILE ALA TYR ILE GLU ASP ASP MET VAL ILE GLY VAL SEQRES 3 B 218 GLY THR GLY SER THR VAL ASN PHE PHE ILE LYS GLU LEU SEQRES 4 B 218 ALA ALA ILE LYS HIS LYS ILE GLU ALA CYS VAL ALA SER SEQRES 5 B 218 SER LYS ALA THR GLU ALA LEU LEU ARG ALA GLU GLY ILE SEQRES 6 B 218 PRO VAL ILE ASP LEU ASN SER VAL GLN ASP LEU PRO ILE SEQRES 7 B 218 TYR VAL ASP GLY ALA ASP GLU VAL ASN GLU ARG GLY GLU SEQRES 8 B 218 MET ILE LYS GLY GLY GLY GLY ALA LEU THR ARG GLU LYS SEQRES 9 B 218 ILE VAL ALA ASN VAL ALA THR GLN PHE ILE CYS ILE VAL SEQRES 10 B 218 ASP GLU SER LYS VAL VAL LYS ARG LEU GLY GLU PHE PRO SEQRES 11 B 218 VAL ALA VAL GLU VAL ILE PRO MET ALA ARG SER PHE VAL SEQRES 12 B 218 ALA ARG GLN ILE VAL LYS LEU GLY GLY ASP PRO GLU TYR SEQRES 13 B 218 ARG GLU GLY PHE VAL THR ASP ASN GLY ASN ILE ILE LEU SEQRES 14 B 218 ASP VAL PHE ASN LEU SER PHE SER THR PRO MET ALA LEU SEQRES 15 B 218 GLU ASP SER LEU ASN VAL ILE PRO GLY VAL VAL GLU ASN SEQRES 16 B 218 GLY VAL PHE ALA LYS ARG LEU ALA ASP LYS VAL LEU VAL SEQRES 17 B 218 ALA SER ALA SER GLY VAL ASN ASN LEU LYS HET NA A 301 1 HET NA B 301 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *428(H2 O) HELIX 1 AA1 HIS A 0 ALA A 14 1 15 HELIX 2 AA2 GLY A 27 ILE A 40 1 14 HELIX 3 AA3 SER A 51 GLU A 61 1 11 HELIX 4 AA4 ASP A 67 VAL A 71 5 5 HELIX 5 AA5 ALA A 97 ALA A 108 1 12 HELIX 6 AA6 SER A 118 VAL A 120 5 3 HELIX 7 AA7 ALA A 137 LEU A 148 1 12 HELIX 8 AA8 THR A 176 VAL A 186 1 11 HELIX 9 AA9 MET B 1 ALA B 14 1 14 HELIX 10 AB1 GLY B 27 ALA B 39 1 13 HELIX 11 AB2 ILE B 40 ILE B 44 5 5 HELIX 12 AB3 SER B 51 GLU B 61 1 11 HELIX 13 AB4 ASP B 67 VAL B 71 5 5 HELIX 14 AB5 ALA B 97 VAL B 107 1 11 HELIX 15 AB6 SER B 118 VAL B 120 5 3 HELIX 16 AB7 ALA B 137 LEU B 148 1 12 HELIX 17 AB8 THR B 176 VAL B 186 1 11 SHEET 1 AA1 6 ILE A 44 ALA A 49 0 SHEET 2 AA1 6 MET A 20 VAL A 24 1 N VAL A 24 O VAL A 48 SHEET 3 AA1 6 ILE A 76 ASP A 79 1 O ILE A 76 N GLY A 23 SHEET 4 AA1 6 GLN A 110 ASP A 116 1 O ILE A 112 N TYR A 77 SHEET 5 AA1 6 LYS A 203 ALA A 207 1 O LYS A 203 N CYS A 113 SHEET 6 AA1 6 VAL A 212 LYS A 216 -1 O ASN A 213 N VAL A 206 SHEET 1 AA2 3 GLU A 83 VAL A 84 0 SHEET 2 AA2 3 MET A 90 ILE A 91 -1 O ILE A 91 N GLU A 83 SHEET 3 AA2 3 VAL A 195 PHE A 196 -1 O PHE A 196 N MET A 90 SHEET 1 AA3 4 ASP A 151 TYR A 154 0 SHEET 2 AA3 4 ILE A 165 PHE A 170 -1 O ASP A 168 N GLU A 153 SHEET 3 AA3 4 VAL A 129 VAL A 133 -1 N VAL A 131 O LEU A 167 SHEET 4 AA3 4 VAL A 190 ASN A 193 -1 O VAL A 191 N GLU A 132 SHEET 1 AA4 6 ALA B 46 ALA B 49 0 SHEET 2 AA4 6 VAL B 21 VAL B 24 1 N VAL B 24 O VAL B 48 SHEET 3 AA4 6 LEU B 74 ASP B 79 1 O ILE B 76 N GLY B 23 SHEET 4 AA4 6 ALA B 108 ASP B 116 1 O ILE B 112 N TYR B 77 SHEET 5 AA4 6 LYS B 203 SER B 208 1 O LYS B 203 N CYS B 113 SHEET 6 AA4 6 GLY B 211 LYS B 216 -1 O GLY B 211 N SER B 208 SHEET 1 AA5 3 GLU B 83 VAL B 84 0 SHEET 2 AA5 3 MET B 90 ILE B 91 -1 O ILE B 91 N GLU B 83 SHEET 3 AA5 3 VAL B 195 PHE B 196 -1 O PHE B 196 N MET B 90 SHEET 1 AA6 4 ASP B 151 TYR B 154 0 SHEET 2 AA6 4 ILE B 165 PHE B 170 -1 O ASP B 168 N GLU B 153 SHEET 3 AA6 4 VAL B 129 VAL B 133 -1 N VAL B 131 O LEU B 167 SHEET 4 AA6 4 VAL B 190 ASN B 193 -1 O VAL B 191 N GLU B 132 LINK O ASN A 185 NA NA A 301 1555 1555 2.55 LINK O ILE A 187 NA NA A 301 1555 1555 2.45 LINK O VAL A 190 NA NA A 301 1555 1555 2.80 LINK NA NA A 301 O HOH B 421 1555 1555 2.36 LINK NA NA A 301 O HOH B 515 1555 1555 2.66 LINK O HOH A 431 NA NA B 301 1555 1555 2.49 LINK O HOH A 459 NA NA B 301 1555 1555 2.28 LINK O HOH A 467 NA NA B 301 1555 1555 2.82 LINK O ASN B 185 NA NA B 301 1555 1555 2.49 LINK O ILE B 187 NA NA B 301 1555 1555 2.51 LINK O VAL B 190 NA NA B 301 1555 1555 2.72 SITE 1 AC1 5 ASN A 185 ILE A 187 VAL A 190 HOH B 421 SITE 2 AC1 5 HOH B 515 SITE 1 AC2 6 HOH A 431 HOH A 459 HOH A 467 ASN B 185 SITE 2 AC2 6 ILE B 187 VAL B 190 CRYST1 104.630 67.930 74.000 90.00 119.54 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009557 0.000000 0.005416 0.00000 SCALE2 0.000000 0.014721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015533 0.00000