HEADER LYASE 17-AUG-18 6EFW TITLE CRYSTAL STRUCTURE OF A YJEF FAMILY PROTEIN FROM CRYPTOCOCCUS TITLE 2 NEOFORMANS VAR. GRUBII SEROTYPE A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-DEPENDENT NAD(P)HX DEHYDRATASE, CRNEC.19313.A.B1; COMPND 5 EC: 4.2.1.93; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOCOCCUS NEOFORMANS VAR. GRUBII SEROTYPE A SOURCE 3 (STRAIN H99 / ATCC 208821 / CBS 10515 / FGSC 9487); SOURCE 4 ORGANISM_TAXID: 235443; SOURCE 5 STRAIN: H99 / ATCC 208821 / CBS 10515 / FGSC 9487; SOURCE 6 GENE: CNAG_05097; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, CRYPTOCOCCUS NEOFORMANS, ATP, YJEF, STRUCTURAL GENOMICS, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 03-APR-24 6EFW 1 REMARK REVDAT 2 13-MAR-24 6EFW 1 REMARK REVDAT 1 05-SEP-18 6EFW 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF A YJEF FAMILY PROTEIN FROM CRYPTOCOCCUS JRNL TITL 2 NEOFORMANS VAR. GRUBII SEROTYPE A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3211 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 27700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.270 REMARK 3 FREE R VALUE TEST SET COUNT : 2015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9868 - 4.5767 1.00 1980 169 0.1691 0.2069 REMARK 3 2 4.5767 - 3.6337 1.00 1882 160 0.1403 0.1696 REMARK 3 3 3.6337 - 3.1747 1.00 1858 133 0.1584 0.1917 REMARK 3 4 3.1747 - 2.8845 1.00 1826 160 0.1759 0.2050 REMARK 3 5 2.8845 - 2.6778 1.00 1852 139 0.1761 0.2394 REMARK 3 6 2.6778 - 2.5200 1.00 1787 159 0.1714 0.2110 REMARK 3 7 2.5200 - 2.3938 1.00 1869 124 0.1656 0.2175 REMARK 3 8 2.3938 - 2.2896 1.00 1814 143 0.1630 0.2130 REMARK 3 9 2.2896 - 2.2015 1.00 1808 151 0.1590 0.2069 REMARK 3 10 2.2015 - 2.1255 1.00 1818 125 0.1610 0.2083 REMARK 3 11 2.1255 - 2.0591 1.00 1806 144 0.1628 0.2155 REMARK 3 12 2.0591 - 2.0002 1.00 1806 143 0.1673 0.2235 REMARK 3 13 2.0002 - 1.9476 1.00 1794 144 0.1797 0.2680 REMARK 3 14 1.9476 - 1.9001 0.98 1785 121 0.1872 0.2540 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.000 2727 REMARK 3 ANGLE : 0.910 3724 REMARK 3 CHIRALITY : 0.060 420 REMARK 3 PLANARITY : 0.000 489 REMARK 3 DIHEDRAL : 15.700 1688 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2667 -27.5516 -23.4024 REMARK 3 T TENSOR REMARK 3 T11: 0.1870 T22: 0.1648 REMARK 3 T33: 0.1909 T12: -0.0005 REMARK 3 T13: 0.0113 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 0.7716 L22: 1.6501 REMARK 3 L33: 2.2718 L12: 1.0133 REMARK 3 L13: 0.6566 L23: 1.4288 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: 0.0409 S13: -0.0192 REMARK 3 S21: -0.1379 S22: 0.0346 S23: 0.0224 REMARK 3 S31: -0.1261 S32: 0.0670 S33: -0.0458 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4989 -25.4983 -38.6494 REMARK 3 T TENSOR REMARK 3 T11: 0.2801 T22: 0.2703 REMARK 3 T33: 0.1978 T12: -0.0903 REMARK 3 T13: 0.0408 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 2.5166 L22: 3.6020 REMARK 3 L33: 4.8847 L12: -0.3376 REMARK 3 L13: 0.0115 L23: 0.4249 REMARK 3 S TENSOR REMARK 3 S11: -0.1815 S12: 0.5709 S13: 0.1154 REMARK 3 S21: -0.7528 S22: 0.2197 S23: -0.1494 REMARK 3 S31: -0.2942 S32: 0.0669 S33: -0.0187 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9784 -27.4391 -31.9930 REMARK 3 T TENSOR REMARK 3 T11: 0.2259 T22: 0.2842 REMARK 3 T33: 0.1826 T12: -0.0693 REMARK 3 T13: 0.0320 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 5.3901 L22: 2.8521 REMARK 3 L33: 4.1719 L12: -1.1725 REMARK 3 L13: 0.3285 L23: -0.2203 REMARK 3 S TENSOR REMARK 3 S11: -0.0680 S12: 0.6517 S13: 0.1554 REMARK 3 S21: -0.2552 S22: 0.0805 S23: -0.1655 REMARK 3 S31: -0.3128 S32: 0.3942 S33: -0.0413 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4576 -28.7807 -18.6763 REMARK 3 T TENSOR REMARK 3 T11: 0.1696 T22: 0.2665 REMARK 3 T33: 0.2660 T12: 0.0109 REMARK 3 T13: -0.0017 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 3.4746 L22: 2.7101 REMARK 3 L33: 2.1713 L12: 1.4824 REMARK 3 L13: -0.6350 L23: -0.9631 REMARK 3 S TENSOR REMARK 3 S11: 0.0328 S12: -0.0008 S13: 0.0504 REMARK 3 S21: 0.0979 S22: -0.0286 S23: -0.4126 REMARK 3 S31: -0.1313 S32: 0.4183 S33: 0.0040 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 250 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1920 -16.5464 -17.3535 REMARK 3 T TENSOR REMARK 3 T11: 0.1665 T22: 0.1624 REMARK 3 T33: 0.1529 T12: -0.0146 REMARK 3 T13: 0.0136 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 3.0693 L22: 5.9318 REMARK 3 L33: 2.7261 L12: -0.8800 REMARK 3 L13: -0.6657 L23: 1.8088 REMARK 3 S TENSOR REMARK 3 S11: 0.1231 S12: -0.0476 S13: 0.3793 REMARK 3 S21: -0.0027 S22: -0.0706 S23: -0.0291 REMARK 3 S31: -0.3344 S32: -0.0151 S33: -0.0256 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0194 -31.2303 -12.9152 REMARK 3 T TENSOR REMARK 3 T11: 0.1245 T22: 0.1492 REMARK 3 T33: 0.1420 T12: 0.0156 REMARK 3 T13: 0.0019 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.3992 L22: 7.8291 REMARK 3 L33: 1.5124 L12: 1.9330 REMARK 3 L13: -0.7918 L23: -1.9668 REMARK 3 S TENSOR REMARK 3 S11: 0.0527 S12: -0.0219 S13: 0.1555 REMARK 3 S21: 0.1262 S22: -0.0565 S23: -0.1210 REMARK 3 S31: -0.0460 S32: 0.1199 S33: -0.0024 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0885 -29.0021 -8.2806 REMARK 3 T TENSOR REMARK 3 T11: 0.1964 T22: 0.1628 REMARK 3 T33: 0.1940 T12: 0.0039 REMARK 3 T13: 0.0048 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.4505 L22: 5.9307 REMARK 3 L33: 6.9343 L12: 0.8906 REMARK 3 L13: 0.9877 L23: 6.4330 REMARK 3 S TENSOR REMARK 3 S11: -0.0290 S12: -0.0986 S13: 0.1069 REMARK 3 S21: 0.2888 S22: -0.1586 S23: 0.4564 REMARK 3 S31: 0.0173 S32: -0.2368 S33: 0.2418 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EFW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27708 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 36.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.69 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.88 REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PREDICTED STRUCTURE FROM ROBETTA SERVER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: OPTIMIZATION SCREEN BASED ON REMARK 280 RIGAKUREAGENTS JCSG+ SCREEN, CONDITION A3: 40% PEG 200, 100MM REMARK 280 KH2PO4/NA2HPO4 PH 6.1, 200MM NACL; CRNEC.19313.A.B1.PS38377 AT REMARK 280 15MG/ML; CRYO: DIRECT; TRAY 302563A3, PUCK VLL3-1, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 42.71000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 42.71000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 93.54000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 42.71000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 42.71000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 93.54000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 42.71000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 42.71000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 93.54000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 42.71000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 42.71000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 93.54000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 42.71000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 42.71000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 93.54000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 42.71000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 42.71000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 93.54000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 42.71000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 42.71000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 93.54000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 42.71000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 42.71000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 93.54000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PER SIZE EXCLUSION CHROMATOGRAPHY THE PROTEIN APPEARS TO BE REMARK 300 A DIMER. HOWEVER, PISA DESCRIBES A VERY CONVINCING CRYSTALLOGRAPHIC REMARK 300 OCTAMER. WITH THESE CONFLICTING PIECES OF INFORMATION THE ACTUAL REMARK 300 OLIGOMERIC STRUCTURE REMAINS UNCLEAR. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 -85.42000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 92930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -85.42000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -85.42000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -85.42000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -85.42000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 -85.42000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 -85.42000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 -85.42000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 -85.42000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 579 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 ASP A 227 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 GLN A 88 CG CD OE1 NE2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 ASP A 158 CG OD1 OD2 REMARK 470 VAL A 162 CG1 CG2 REMARK 470 MET A 172 CG SD CE REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 PHE A 222 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 225 CG CD1 CD2 REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 LYS A 284 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 85 58.37 -90.06 REMARK 500 ALA A 143 -130.16 54.12 REMARK 500 ASP A 158 74.40 61.28 REMARK 500 ARG A 164 37.25 -157.70 REMARK 500 GLN A 233 153.29 -45.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 566 O REMARK 620 2 HOH A 566 O 157.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-CRNEC.19313.A RELATED DB: TARGETTRACK DBREF 6EFW A 1 346 UNP J9VIT7 J9VIT7_CRYNH 1 346 SEQADV 6EFW MET A -7 UNP J9VIT7 EXPRESSION TAG SEQADV 6EFW ALA A -6 UNP J9VIT7 EXPRESSION TAG SEQADV 6EFW HIS A -5 UNP J9VIT7 EXPRESSION TAG SEQADV 6EFW HIS A -4 UNP J9VIT7 EXPRESSION TAG SEQADV 6EFW HIS A -3 UNP J9VIT7 EXPRESSION TAG SEQADV 6EFW HIS A -2 UNP J9VIT7 EXPRESSION TAG SEQADV 6EFW HIS A -1 UNP J9VIT7 EXPRESSION TAG SEQADV 6EFW HIS A 0 UNP J9VIT7 EXPRESSION TAG SEQRES 1 A 354 MET ALA HIS HIS HIS HIS HIS HIS MET ALA SER LYS GLN SEQRES 2 A 354 HIS ALA HIS ILE LEU SER LEU ALA ARG SER MET ILE PRO SEQRES 3 A 354 PRO LEU HIS PRO LYS LEU HIS LYS GLY GLN ALA GLY ARG SEQRES 4 A 354 ILE GLY VAL LEU GLY GLY SER GLY ASP TYR SER GLY ALA SEQRES 5 A 354 PRO TYR PHE SER SER MET GLY ALA MET ARG PHE GLY ALA SEQRES 6 A 354 ASP LEU ALA HIS VAL ILE CYS GLU PRO SER ALA GLY ALA SEQRES 7 A 354 VAL ILE LYS THR TYR SER PRO ASP LEU ILE VAL HIS THR SEQRES 8 A 354 ILE LEU ASP PRO GLN LYS SER ARG GLU ASP ILE ARG SER SEQRES 9 A 354 ALA LEU LYS GLY VAL MET SER ARG LEU HIS VAL LEU ILE SEQRES 10 A 354 ILE GLY PRO GLY LEU GLY ARG ASP ASP HIS MET GLN SER SEQRES 11 A 354 CYS ALA LYS ILE ALA PHE GLU LEU ALA LYS ASP MET GLU SEQRES 12 A 354 GLN MET GLY VAL VAL VAL ASP ALA ASP GLY LEU TRP LEU SEQRES 13 A 354 VAL GLN ASN GLU PRO LYS VAL VAL MET ASP TRP PRO GLY SEQRES 14 A 354 VAL PRO ARG ILE ILE LEU THR PRO ASN VAL MET GLU PHE SEQRES 15 A 354 LYS ARG LEU CYS ASP THR MET LYS ILE ASN ALA SER GLY SEQRES 16 A 354 PRO HIS THR SER LEU CYS PRO GLN LEU ALA THR ALA LEU SEQRES 17 A 354 GLY ASN ALA THR ILE ILE GLN LYS GLY PRO SER ASP ILE SEQRES 18 A 354 ILE SER ASN GLY LEU LYS ILE PRO PHE ALA LEU LEU SER SEQRES 19 A 354 ASP GLU SER GLU GLU GLU GLN ASN TYR LEU GLU VAL LYS SEQRES 20 A 354 VAL GLU GLY GLY LEU LYS ARG VAL GLY GLY GLN GLY ASP SEQRES 21 A 354 ILE LEU SER GLY SER THR GLY VAL LEU LEU ALA TRP GLY SEQRES 22 A 354 SER GLU TRP VAL ARG GLY THR TYR GLU HIS VAL GLY HIS SEQRES 23 A 354 PRO PRO PRO GLN ASP LYS ALA ILE LYS GLU ASN ILE PRO SEQRES 24 A 354 VAL LEU ALA ALA TYR GLY ALA SER THR PHE ASN ARG THR SEQRES 25 A 354 VAL SER LYS ARG GLY PHE GLN LYS LYS GLY ARG SER MET SEQRES 26 A 354 VAL THR GLY ASP LEU VAL ASP MET VAL GLY GLU VAL TYR SEQRES 27 A 354 GLU GLU VAL PHE GLY ASN PRO GLY GLU VAL GLU GLY ARG SEQRES 28 A 354 GLY LYS LEU HET NA A 401 1 HET PO4 A 402 5 HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 2 NA NA 1+ FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *219(H2 O) HELIX 1 AA1 HIS A 0 SER A 15 1 16 HELIX 2 AA2 SER A 42 GLY A 56 1 15 HELIX 3 AA3 GLU A 65 SER A 76 1 12 HELIX 4 AA4 SER A 90 SER A 103 1 14 HELIX 5 AA5 ASP A 117 MET A 134 1 18 HELIX 6 AA6 ALA A 143 GLU A 152 1 10 HELIX 7 AA7 PRO A 153 VAL A 156 5 4 HELIX 8 AA8 ASN A 170 MET A 181 1 12 HELIX 9 AA9 PRO A 188 THR A 190 5 3 HELIX 10 AB1 SER A 191 LEU A 200 1 10 HELIX 11 AB2 GLY A 249 GLY A 271 1 23 HELIX 12 AB3 TYR A 273 GLY A 277 5 5 HELIX 13 AB4 ASP A 283 ASN A 289 1 7 HELIX 14 AB5 ASN A 289 GLY A 314 1 26 HELIX 15 AB6 ARG A 315 MET A 317 5 3 HELIX 16 AB7 VAL A 318 PHE A 334 1 17 HELIX 17 AB8 PHE A 334 GLU A 341 1 8 SHEET 1 AA1 9 ILE A 80 HIS A 82 0 SHEET 2 AA1 9 LEU A 59 ILE A 63 1 N VAL A 62 O HIS A 82 SHEET 3 AA1 9 ARG A 31 LEU A 35 1 N VAL A 34 O ILE A 63 SHEET 4 AA1 9 VAL A 107 ILE A 110 1 O ILE A 109 N LEU A 35 SHEET 5 AA1 9 GLY A 138 VAL A 141 1 O VAL A 140 N ILE A 110 SHEET 6 AA1 9 ILE A 165 LEU A 167 1 O ILE A 166 N VAL A 141 SHEET 7 AA1 9 THR A 204 GLN A 207 1 O ILE A 206 N LEU A 167 SHEET 8 AA1 9 ASP A 212 SER A 215 -1 O ILE A 213 N GLN A 207 SHEET 9 AA1 9 LEU A 236 VAL A 238 -1 O LEU A 236 N ILE A 214 LINK NA NA A 401 O HOH A 566 1555 1555 2.72 LINK NA NA A 401 O HOH A 566 1555 2445 2.72 SITE 1 AC1 1 HOH A 566 SITE 1 AC2 3 ARG A 91 HIS A 119 SER A 122 CRYST1 85.420 85.420 187.080 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011707 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005345 0.00000