HEADER LYASE 17-AUG-18 6EFX TITLE CRYSTAL STRUCTURE OF A YJEF FAMILY PROTEIN FROM CRYPTOCOCCUS TITLE 2 NEOFORMANS VAR. GRUBII SEROTYPE A IN COMPLEX WITH AMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-DEPENDENT NAD(P)HX DEHYDRATASE, CRNEC.19313.A; COMPND 5 EC: 4.2.1.93; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOCOCCUS NEOFORMANS VAR. GRUBII SEROTYPE A SOURCE 3 (STRAIN H99 / ATCC 208821 / CBS 10515 / FGSC 9487); SOURCE 4 ORGANISM_TAXID: 235443; SOURCE 5 STRAIN: H99 / ATCC 208821 / CBS 10515 / FGSC 9487; SOURCE 6 ATCC: 208821; SOURCE 7 GENE: CNAG_05097; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, CRYPTOCOCCUS NEOFORMANS, ATP, YJEF, STRUCTURAL GENOMICS, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 03-APR-24 6EFX 1 REMARK REVDAT 2 13-MAR-24 6EFX 1 LINK REVDAT 1 05-SEP-18 6EFX 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF A YJEF FAMILY PROTEIN FROM CRYPTOCOCCUS JRNL TITL 2 NEOFORMANS VAR. GRUBII SEROTYPE A IN COMPLEX WITH AMPPNP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3211 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9954 - 4.8187 1.00 1711 151 0.1816 0.2117 REMARK 3 2 4.8187 - 3.8253 1.00 1614 134 0.1450 0.1604 REMARK 3 3 3.8253 - 3.3419 1.00 1602 142 0.1494 0.2023 REMARK 3 4 3.3419 - 3.0364 1.00 1572 131 0.1674 0.2401 REMARK 3 5 3.0364 - 2.8188 1.00 1567 150 0.1732 0.2153 REMARK 3 6 2.8188 - 2.6527 1.00 1553 131 0.1674 0.2264 REMARK 3 7 2.6527 - 2.5198 1.00 1564 126 0.1641 0.2012 REMARK 3 8 2.5198 - 2.4101 1.00 1563 141 0.1620 0.2457 REMARK 3 9 2.4101 - 2.3173 1.00 1529 143 0.1616 0.1922 REMARK 3 10 2.3173 - 2.2374 1.00 1556 126 0.1582 0.2159 REMARK 3 11 2.2374 - 2.1674 1.00 1570 116 0.1636 0.2142 REMARK 3 12 2.1674 - 2.1055 1.00 1521 147 0.1617 0.2454 REMARK 3 13 2.1055 - 2.0500 1.00 1548 140 0.1763 0.2366 REMARK 3 14 2.0500 - 2.0000 1.00 1514 143 0.1977 0.2819 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.000 2706 REMARK 3 ANGLE : 0.930 3693 REMARK 3 CHIRALITY : 0.060 413 REMARK 3 PLANARITY : 0.000 494 REMARK 3 DIHEDRAL : 16.000 1651 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.6269 -27.6349 -23.8417 REMARK 3 T TENSOR REMARK 3 T11: 0.1653 T22: 0.1488 REMARK 3 T33: 0.1658 T12: -0.0221 REMARK 3 T13: 0.0164 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 0.9553 L22: 1.0317 REMARK 3 L33: 1.6465 L12: 0.3286 REMARK 3 L13: 0.4074 L23: 0.5459 REMARK 3 S TENSOR REMARK 3 S11: 0.0212 S12: 0.0465 S13: -0.0171 REMARK 3 S21: -0.1191 S22: 0.0289 S23: 0.0194 REMARK 3 S31: -0.1333 S32: 0.0872 S33: -0.0778 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0249 -25.0388 -37.4678 REMARK 3 T TENSOR REMARK 3 T11: 0.2782 T22: 0.2502 REMARK 3 T33: 0.1676 T12: -0.0414 REMARK 3 T13: 0.0186 T23: 0.0576 REMARK 3 L TENSOR REMARK 3 L11: 3.1967 L22: 1.9175 REMARK 3 L33: 3.8602 L12: -0.3397 REMARK 3 L13: 1.2582 L23: -0.6145 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: 0.5436 S13: 0.2255 REMARK 3 S21: -0.6957 S22: 0.0433 S23: 0.0586 REMARK 3 S31: -0.2799 S32: -0.0102 S33: 0.0172 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1467 -26.8724 -34.1684 REMARK 3 T TENSOR REMARK 3 T11: 0.2543 T22: 0.3810 REMARK 3 T33: 0.2059 T12: -0.0752 REMARK 3 T13: 0.0555 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 3.6006 L22: 1.1132 REMARK 3 L33: 2.9867 L12: -0.0951 REMARK 3 L13: 1.1393 L23: -0.4898 REMARK 3 S TENSOR REMARK 3 S11: -0.1500 S12: 0.7883 S13: 0.1463 REMARK 3 S21: -0.1534 S22: 0.0890 S23: -0.1478 REMARK 3 S31: -0.2983 S32: 0.7111 S33: 0.0212 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9239 -28.8707 -18.6639 REMARK 3 T TENSOR REMARK 3 T11: 0.1655 T22: 0.3235 REMARK 3 T33: 0.2695 T12: -0.0088 REMARK 3 T13: -0.0023 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 3.4661 L22: 2.4733 REMARK 3 L33: 1.6055 L12: 1.6146 REMARK 3 L13: -0.5243 L23: -0.4717 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: 0.0231 S13: 0.0917 REMARK 3 S21: 0.0729 S22: 0.0153 S23: -0.3660 REMARK 3 S31: -0.1439 S32: 0.4972 S33: -0.0215 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 250 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3204 -23.6512 -15.3454 REMARK 3 T TENSOR REMARK 3 T11: 0.1236 T22: 0.1444 REMARK 3 T33: 0.1531 T12: -0.0180 REMARK 3 T13: 0.0073 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.0734 L22: 5.1277 REMARK 3 L33: 0.8231 L12: -0.2346 REMARK 3 L13: 0.0408 L23: -0.3859 REMARK 3 S TENSOR REMARK 3 S11: 0.0340 S12: 0.0137 S13: 0.2256 REMARK 3 S21: 0.1000 S22: -0.0325 S23: -0.2406 REMARK 3 S31: -0.2029 S32: 0.0917 S33: 0.0005 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.1088 -28.9500 -8.3867 REMARK 3 T TENSOR REMARK 3 T11: 0.1464 T22: 0.1513 REMARK 3 T33: 0.1700 T12: 0.0011 REMARK 3 T13: -0.0133 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.4878 L22: 5.3165 REMARK 3 L33: 6.7746 L12: 0.6761 REMARK 3 L13: 0.9224 L23: 6.0508 REMARK 3 S TENSOR REMARK 3 S11: -0.1213 S12: -0.0834 S13: 0.0930 REMARK 3 S21: 0.1053 S22: -0.0167 S23: 0.3214 REMARK 3 S31: -0.1223 S32: -0.1450 S33: 0.1634 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EFX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236201. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23914 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.982 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.72 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.05 REMARK 200 R MERGE FOR SHELL (I) : 0.57400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PREDICTED STRUCTURE FROM ROBETTA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: OPTIMIZATION SCREEN BASED ON REMARK 280 RIGAKUREAGENTS JCSG+ SCREEN, CONDITION D3: 49% PEG 200, 100MM REMARK 280 KH2PO4/NA2HPO4 PH 5.7, 100MM NACL: CRNEC.19313.A.B1.PS38377 AT REMARK 280 15MG/ML + 2.5MM MGCL2 + 2.5MM AMPPNP: CRYO: 10% EG + COMPOUNDS: REMARK 280 TRAY 301295G1, PUCK HWU2-5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 42.67000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 42.67000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 93.96500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 42.67000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 42.67000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 93.96500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 42.67000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 42.67000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 93.96500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 42.67000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 42.67000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 93.96500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 42.67000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 42.67000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 93.96500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 42.67000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 42.67000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 93.96500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 42.67000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 42.67000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 93.96500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 42.67000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 42.67000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 93.96500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PER SIZE EXCLUSION CHROMATOGRAPHY THE PROTEIN APPEARS TO BE REMARK 300 A DIMER. HOWEVER, PISA DESCRIBES A VERY CONVINCING CRYSTALLOGRAPHIC REMARK 300 OCTAMER. WITH THESE CONFLICTING PIECES OF INFORMATION THE ACTUAL REMARK 300 OLIGOMERIC STRUCTURE REMAINS UNCLEAR. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 -85.34000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 87530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -205.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -85.34000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -85.34000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -85.34000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -85.34000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 -85.34000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 -85.34000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 -85.34000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 -85.34000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 701 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 706 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 717 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 SER A 226 REMARK 465 ASP A 227 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 GLN A 88 CG CD OE1 NE2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 VAL A 162 CG1 CG2 REMARK 470 MET A 172 CG SD CE REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 HIS A 189 CG ND1 CD2 CE1 NE2 REMARK 470 PHE A 222 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 225 CG CD1 CD2 REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 LYS A 312 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 83 48.65 -86.71 REMARK 500 LEU A 85 45.93 -89.17 REMARK 500 ALA A 143 -130.64 56.22 REMARK 500 ARG A 164 32.27 -157.89 REMARK 500 LEU A 224 -68.36 -109.87 REMARK 500 ARG A 246 46.26 -92.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A 401 O1G REMARK 620 2 ANP A 401 O1B 91.8 REMARK 620 3 HOH A 556 O 174.4 85.6 REMARK 620 4 HOH A 557 O 96.8 103.3 88.6 REMARK 620 5 HOH A 579 O 91.0 86.3 83.9 167.3 REMARK 620 6 HOH A 672 O 96.7 166.4 85.0 86.2 83.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-CRNEC.19313.A RELATED DB: TARGETTRACK DBREF 6EFX A 1 346 UNP J9VIT7 J9VIT7_CRYNH 1 346 SEQADV 6EFX MET A -7 UNP J9VIT7 EXPRESSION TAG SEQADV 6EFX ALA A -6 UNP J9VIT7 EXPRESSION TAG SEQADV 6EFX HIS A -5 UNP J9VIT7 EXPRESSION TAG SEQADV 6EFX HIS A -4 UNP J9VIT7 EXPRESSION TAG SEQADV 6EFX HIS A -3 UNP J9VIT7 EXPRESSION TAG SEQADV 6EFX HIS A -2 UNP J9VIT7 EXPRESSION TAG SEQADV 6EFX HIS A -1 UNP J9VIT7 EXPRESSION TAG SEQADV 6EFX HIS A 0 UNP J9VIT7 EXPRESSION TAG SEQRES 1 A 354 MET ALA HIS HIS HIS HIS HIS HIS MET ALA SER LYS GLN SEQRES 2 A 354 HIS ALA HIS ILE LEU SER LEU ALA ARG SER MET ILE PRO SEQRES 3 A 354 PRO LEU HIS PRO LYS LEU HIS LYS GLY GLN ALA GLY ARG SEQRES 4 A 354 ILE GLY VAL LEU GLY GLY SER GLY ASP TYR SER GLY ALA SEQRES 5 A 354 PRO TYR PHE SER SER MET GLY ALA MET ARG PHE GLY ALA SEQRES 6 A 354 ASP LEU ALA HIS VAL ILE CYS GLU PRO SER ALA GLY ALA SEQRES 7 A 354 VAL ILE LYS THR TYR SER PRO ASP LEU ILE VAL HIS THR SEQRES 8 A 354 ILE LEU ASP PRO GLN LYS SER ARG GLU ASP ILE ARG SER SEQRES 9 A 354 ALA LEU LYS GLY VAL MET SER ARG LEU HIS VAL LEU ILE SEQRES 10 A 354 ILE GLY PRO GLY LEU GLY ARG ASP ASP HIS MET GLN SER SEQRES 11 A 354 CYS ALA LYS ILE ALA PHE GLU LEU ALA LYS ASP MET GLU SEQRES 12 A 354 GLN MET GLY VAL VAL VAL ASP ALA ASP GLY LEU TRP LEU SEQRES 13 A 354 VAL GLN ASN GLU PRO LYS VAL VAL MET ASP TRP PRO GLY SEQRES 14 A 354 VAL PRO ARG ILE ILE LEU THR PRO ASN VAL MET GLU PHE SEQRES 15 A 354 LYS ARG LEU CYS ASP THR MET LYS ILE ASN ALA SER GLY SEQRES 16 A 354 PRO HIS THR SER LEU CYS PRO GLN LEU ALA THR ALA LEU SEQRES 17 A 354 GLY ASN ALA THR ILE ILE GLN LYS GLY PRO SER ASP ILE SEQRES 18 A 354 ILE SER ASN GLY LEU LYS ILE PRO PHE ALA LEU LEU SER SEQRES 19 A 354 ASP GLU SER GLU GLU GLU GLN ASN TYR LEU GLU VAL LYS SEQRES 20 A 354 VAL GLU GLY GLY LEU LYS ARG VAL GLY GLY GLN GLY ASP SEQRES 21 A 354 ILE LEU SER GLY SER THR GLY VAL LEU LEU ALA TRP GLY SEQRES 22 A 354 SER GLU TRP VAL ARG GLY THR TYR GLU HIS VAL GLY HIS SEQRES 23 A 354 PRO PRO PRO GLN ASP LYS ALA ILE LYS GLU ASN ILE PRO SEQRES 24 A 354 VAL LEU ALA ALA TYR GLY ALA SER THR PHE ASN ARG THR SEQRES 25 A 354 VAL SER LYS ARG GLY PHE GLN LYS LYS GLY ARG SER MET SEQRES 26 A 354 VAL THR GLY ASP LEU VAL ASP MET VAL GLY GLU VAL TYR SEQRES 27 A 354 GLU GLU VAL PHE GLY ASN PRO GLY GLU VAL GLU GLY ARG SEQRES 28 A 354 GLY LYS LEU HET ANP A 401 31 HET MG A 402 1 HET PO4 A 403 5 HET EDO A 404 4 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 MG MG 2+ FORMUL 4 PO4 O4 P 3- FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *217(H2 O) HELIX 1 AA1 HIS A 0 SER A 15 1 16 HELIX 2 AA2 SER A 42 GLY A 56 1 15 HELIX 3 AA3 GLU A 65 SER A 76 1 12 HELIX 4 AA4 SER A 90 SER A 103 1 14 HELIX 5 AA5 ASP A 117 MET A 134 1 18 HELIX 6 AA6 ALA A 143 GLU A 152 1 10 HELIX 7 AA7 PRO A 153 MET A 157 5 5 HELIX 8 AA8 ASN A 170 MET A 181 1 12 HELIX 9 AA9 PRO A 188 THR A 190 5 3 HELIX 10 AB1 SER A 191 LEU A 200 1 10 HELIX 11 AB2 GLY A 249 GLY A 271 1 23 HELIX 12 AB3 TYR A 273 GLY A 277 5 5 HELIX 13 AB4 ASP A 283 ASN A 289 1 7 HELIX 14 AB5 ASN A 289 GLY A 314 1 26 HELIX 15 AB6 ARG A 315 MET A 317 5 3 HELIX 16 AB7 VAL A 318 ASP A 324 1 7 HELIX 17 AB8 MET A 325 PHE A 334 1 10 HELIX 18 AB9 PHE A 334 GLU A 341 1 8 SHEET 1 AA1 9 ILE A 80 HIS A 82 0 SHEET 2 AA1 9 LEU A 59 ILE A 63 1 N VAL A 62 O HIS A 82 SHEET 3 AA1 9 ARG A 31 LEU A 35 1 N VAL A 34 O ILE A 63 SHEET 4 AA1 9 VAL A 107 ILE A 110 1 O ILE A 109 N LEU A 35 SHEET 5 AA1 9 GLY A 138 VAL A 141 1 O VAL A 140 N ILE A 110 SHEET 6 AA1 9 ILE A 165 LEU A 167 1 O ILE A 166 N VAL A 141 SHEET 7 AA1 9 THR A 204 GLN A 207 1 O ILE A 206 N LEU A 167 SHEET 8 AA1 9 ASP A 212 SER A 215 -1 O ILE A 213 N GLN A 207 SHEET 9 AA1 9 LEU A 236 VAL A 238 -1 O LEU A 236 N ILE A 214 LINK O1G ANP A 401 MG MG A 402 1555 1555 2.12 LINK O1B ANP A 401 MG MG A 402 1555 1555 2.03 LINK MG MG A 402 O HOH A 556 1555 1555 2.19 LINK MG MG A 402 O HOH A 557 1555 1555 2.11 LINK MG MG A 402 O HOH A 579 1555 1555 2.16 LINK MG MG A 402 O HOH A 672 1555 1555 2.07 SITE 1 AC1 31 PRO A 22 LYS A 26 ASN A 170 LYS A 208 SITE 2 AC1 31 GLY A 209 PRO A 210 ASP A 212 GLY A 243 SITE 3 AC1 31 ARG A 246 GLY A 248 GLY A 249 GLN A 250 SITE 4 AC1 31 GLY A 251 ASP A 252 ASN A 302 ARG A 303 SITE 5 AC1 31 MG A 402 HOH A 522 HOH A 530 HOH A 536 SITE 6 AC1 31 HOH A 554 HOH A 556 HOH A 573 HOH A 579 SITE 7 AC1 31 HOH A 584 HOH A 585 HOH A 599 HOH A 614 SITE 8 AC1 31 HOH A 616 HOH A 621 HOH A 657 SITE 1 AC2 5 ANP A 401 HOH A 556 HOH A 557 HOH A 579 SITE 2 AC2 5 HOH A 672 SITE 1 AC3 4 ARG A 91 HIS A 119 SER A 122 CYS A 123 SITE 1 AC4 4 LYS A 312 LYS A 313 HOH A 514 HOH A 648 CRYST1 85.340 85.340 187.930 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011718 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011718 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005321 0.00000