HEADER TRANSFERASE/TRANSFERASE INHIBITOR 19-AUG-18 6EG9 TITLE IRAK4 IN COMPLEX WITH PONATINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN RESIDUES 154-460; COMPND 5 SYNONYM: IRAK-4,RENAL CARCINOMA ANTIGEN NY-REN-64; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IRAK4; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS INHIBITOR, COMPLEX, TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.WANG,H.WU REVDAT 4 13-MAR-24 6EG9 1 COMPND HETNAM LINK REVDAT 3 18-DEC-19 6EG9 1 REMARK REVDAT 2 04-SEP-19 6EG9 1 JRNL REVDAT 1 20-FEB-19 6EG9 0 JRNL AUTH L.WANG,R.FERRAO,Q.LI,J.M.HATCHER,H.G.CHOI,S.J.BUHRLAGE, JRNL AUTH 2 N.S.GRAY,H.WU JRNL TITL CONFORMATIONAL FLEXIBILITY AND INHIBITOR BINDING TO JRNL TITL 2 UNPHOSPHORYLATED INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4 JRNL TITL 3 (IRAK4). JRNL REF J.BIOL.CHEM. V. 294 4511 2019 JRNL REFN ESSN 1083-351X JRNL PMID 30679311 JRNL DOI 10.1074/JBC.RA118.005428 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 36765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.6406 - 5.6742 0.98 2989 158 0.2066 0.2280 REMARK 3 2 5.6742 - 4.5040 1.00 2828 148 0.1943 0.1953 REMARK 3 3 4.5040 - 3.9347 1.00 2765 146 0.1776 0.2233 REMARK 3 4 3.9347 - 3.5750 1.00 2725 144 0.2079 0.2362 REMARK 3 5 3.5750 - 3.3187 1.00 2725 143 0.2358 0.2404 REMARK 3 6 3.3187 - 3.1231 1.00 2682 142 0.2493 0.2554 REMARK 3 7 3.1231 - 2.9667 1.00 2692 141 0.2527 0.3005 REMARK 3 8 2.9667 - 2.8375 1.00 2640 139 0.2661 0.3407 REMARK 3 9 2.8375 - 2.7283 1.00 2675 141 0.2817 0.3331 REMARK 3 10 2.7283 - 2.6341 1.00 2669 140 0.2921 0.3362 REMARK 3 11 2.6341 - 2.5518 1.00 2660 140 0.2914 0.3532 REMARK 3 12 2.5518 - 2.4788 1.00 2645 139 0.2999 0.3301 REMARK 3 13 2.4788 - 2.4136 0.85 2231 118 0.3173 0.3489 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4517 REMARK 3 ANGLE : 0.994 6103 REMARK 3 CHIRALITY : 0.161 671 REMARK 3 PLANARITY : 0.005 785 REMARK 3 DIHEDRAL : 4.078 3276 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EG9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36908 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 144.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 18.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.0 1.5M-1.6M REMARK 280 AMMONIUM SULFATE 20MM COBALT CHLORIDE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.76700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 289.53400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 217.15050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 361.91750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.38350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 144.76700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 289.53400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 361.91750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 217.15050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 72.38350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -42.51850 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -73.64420 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 -42.51850 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 -73.64420 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -72.38350 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -72.38350 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 -42.51850 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -73.64420 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 656 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 149 REMARK 465 ALA A 150 REMARK 465 MET A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 GLU A 154 REMARK 465 ASN A 155 REMARK 465 LYS A 156 REMARK 465 SER A 157 REMARK 465 LEU A 158 REMARK 465 GLU A 159 REMARK 465 VAL A 160 REMARK 465 SER A 161 REMARK 465 ASP A 162 REMARK 465 THR A 163 REMARK 465 MET A 218 REMARK 465 VAL A 219 REMARK 465 ASP A 220 REMARK 465 LEU A 332 REMARK 465 ALA A 333 REMARK 465 ARG A 334 REMARK 465 ALA A 335 REMARK 465 SER A 336 REMARK 465 GLU A 337 REMARK 465 LYS A 338 REMARK 465 PHE A 339 REMARK 465 ALA A 340 REMARK 465 GLN A 341 REMARK 465 THR A 342 REMARK 465 VAL A 343 REMARK 465 MET A 344 REMARK 465 THR A 345 REMARK 465 SER A 346 REMARK 465 ARG A 347 REMARK 465 ILE A 348 REMARK 465 SER A 460 REMARK 465 GLY B 149 REMARK 465 ALA B 150 REMARK 465 MET B 151 REMARK 465 GLY B 152 REMARK 465 SER B 153 REMARK 465 GLU B 154 REMARK 465 ASN B 155 REMARK 465 LYS B 156 REMARK 465 SER B 157 REMARK 465 LEU B 158 REMARK 465 GLU B 159 REMARK 465 VAL B 160 REMARK 465 SER B 161 REMARK 465 ASP B 162 REMARK 465 THR B 163 REMARK 465 ARG B 164 REMARK 465 MET B 218 REMARK 465 VAL B 219 REMARK 465 ASP B 220 REMARK 465 GLY B 331 REMARK 465 LEU B 332 REMARK 465 ALA B 333 REMARK 465 ARG B 334 REMARK 465 ALA B 335 REMARK 465 SER B 336 REMARK 465 GLU B 337 REMARK 465 LYS B 338 REMARK 465 PHE B 339 REMARK 465 ALA B 340 REMARK 465 GLN B 341 REMARK 465 THR B 342 REMARK 465 VAL B 343 REMARK 465 MET B 344 REMARK 465 THR B 345 REMARK 465 SER B 346 REMARK 465 ARG B 347 REMARK 465 ILE B 348 REMARK 465 SER B 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 182 OH TYR A 201 2.11 REMARK 500 OE1 GLN B 293 OG1 THR B 458 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 224 -27.59 178.58 REMARK 500 ASP A 254 -173.73 -69.79 REMARK 500 ASP A 256 -70.21 73.25 REMARK 500 ARG A 310 -5.67 70.86 REMARK 500 ASP A 311 51.84 -140.93 REMARK 500 ARG B 310 -7.02 77.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 256 -11.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 503 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 390 NE2 REMARK 620 2 LYS B 408 NZ 72.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 0LI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 0LI B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 505 DBREF 6EG9 A 154 460 UNP Q9NWZ3 IRAK4_HUMAN 154 460 DBREF 6EG9 B 154 460 UNP Q9NWZ3 IRAK4_HUMAN 154 460 SEQADV 6EG9 GLY A 149 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EG9 ALA A 150 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EG9 MET A 151 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EG9 GLY A 152 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EG9 SER A 153 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EG9 GLY B 149 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EG9 ALA B 150 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EG9 MET B 151 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EG9 GLY B 152 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EG9 SER B 153 UNP Q9NWZ3 EXPRESSION TAG SEQRES 1 A 312 GLY ALA MET GLY SER GLU ASN LYS SER LEU GLU VAL SER SEQRES 2 A 312 ASP THR ARG PHE HIS SER PHE SER PHE TYR GLU LEU LYS SEQRES 3 A 312 ASN VAL THR ASN ASN PHE ASP GLU ARG PRO ILE SER VAL SEQRES 4 A 312 GLY GLY ASN LYS MET GLY GLU GLY GLY PHE GLY VAL VAL SEQRES 5 A 312 TYR LYS GLY TYR VAL ASN ASN THR THR VAL ALA VAL LYS SEQRES 6 A 312 LYS LEU ALA ALA MET VAL ASP ILE THR THR GLU GLU LEU SEQRES 7 A 312 LYS GLN GLN PHE ASP GLN GLU ILE LYS VAL MET ALA LYS SEQRES 8 A 312 CYS GLN HIS GLU ASN LEU VAL GLU LEU LEU GLY PHE SER SEQRES 9 A 312 SER ASP GLY ASP ASP LEU CYS LEU VAL TYR VAL TYR MET SEQRES 10 A 312 PRO ASN GLY SER LEU LEU ASP ARG LEU SER CYS LEU ASP SEQRES 11 A 312 GLY THR PRO PRO LEU SER TRP HIS MET ARG CYS LYS ILE SEQRES 12 A 312 ALA GLN GLY ALA ALA ASN GLY ILE ASN PHE LEU HIS GLU SEQRES 13 A 312 ASN HIS HIS ILE HIS ARG ASP ILE LYS SER ALA ASN ILE SEQRES 14 A 312 LEU LEU ASP GLU ALA PHE THR ALA LYS ILE SER ASP PHE SEQRES 15 A 312 GLY LEU ALA ARG ALA SER GLU LYS PHE ALA GLN THR VAL SEQRES 16 A 312 MET THR SER ARG ILE VAL GLY THR THR ALA TYR MET ALA SEQRES 17 A 312 PRO GLU ALA LEU ARG GLY GLU ILE THR PRO LYS SER ASP SEQRES 18 A 312 ILE TYR SER PHE GLY VAL VAL LEU LEU GLU ILE ILE THR SEQRES 19 A 312 GLY LEU PRO ALA VAL ASP GLU HIS ARG GLU PRO GLN LEU SEQRES 20 A 312 LEU LEU ASP ILE LYS GLU GLU ILE GLU ASP GLU GLU LYS SEQRES 21 A 312 THR ILE GLU ASP TYR ILE ASP LYS LYS MET ASN ASP ALA SEQRES 22 A 312 ASP SER THR SER VAL GLU ALA MET TYR SER VAL ALA SER SEQRES 23 A 312 GLN CYS LEU HIS GLU LYS LYS ASN LYS ARG PRO ASP ILE SEQRES 24 A 312 LYS LYS VAL GLN GLN LEU LEU GLN GLU MET THR ALA SER SEQRES 1 B 312 GLY ALA MET GLY SER GLU ASN LYS SER LEU GLU VAL SER SEQRES 2 B 312 ASP THR ARG PHE HIS SER PHE SER PHE TYR GLU LEU LYS SEQRES 3 B 312 ASN VAL THR ASN ASN PHE ASP GLU ARG PRO ILE SER VAL SEQRES 4 B 312 GLY GLY ASN LYS MET GLY GLU GLY GLY PHE GLY VAL VAL SEQRES 5 B 312 TYR LYS GLY TYR VAL ASN ASN THR THR VAL ALA VAL LYS SEQRES 6 B 312 LYS LEU ALA ALA MET VAL ASP ILE THR THR GLU GLU LEU SEQRES 7 B 312 LYS GLN GLN PHE ASP GLN GLU ILE LYS VAL MET ALA LYS SEQRES 8 B 312 CYS GLN HIS GLU ASN LEU VAL GLU LEU LEU GLY PHE SER SEQRES 9 B 312 SER ASP GLY ASP ASP LEU CYS LEU VAL TYR VAL TYR MET SEQRES 10 B 312 PRO ASN GLY SER LEU LEU ASP ARG LEU SER CYS LEU ASP SEQRES 11 B 312 GLY THR PRO PRO LEU SER TRP HIS MET ARG CYS LYS ILE SEQRES 12 B 312 ALA GLN GLY ALA ALA ASN GLY ILE ASN PHE LEU HIS GLU SEQRES 13 B 312 ASN HIS HIS ILE HIS ARG ASP ILE LYS SER ALA ASN ILE SEQRES 14 B 312 LEU LEU ASP GLU ALA PHE THR ALA LYS ILE SER ASP PHE SEQRES 15 B 312 GLY LEU ALA ARG ALA SER GLU LYS PHE ALA GLN THR VAL SEQRES 16 B 312 MET THR SER ARG ILE VAL GLY THR THR ALA TYR MET ALA SEQRES 17 B 312 PRO GLU ALA LEU ARG GLY GLU ILE THR PRO LYS SER ASP SEQRES 18 B 312 ILE TYR SER PHE GLY VAL VAL LEU LEU GLU ILE ILE THR SEQRES 19 B 312 GLY LEU PRO ALA VAL ASP GLU HIS ARG GLU PRO GLN LEU SEQRES 20 B 312 LEU LEU ASP ILE LYS GLU GLU ILE GLU ASP GLU GLU LYS SEQRES 21 B 312 THR ILE GLU ASP TYR ILE ASP LYS LYS MET ASN ASP ALA SEQRES 22 B 312 ASP SER THR SER VAL GLU ALA MET TYR SER VAL ALA SER SEQRES 23 B 312 GLN CYS LEU HIS GLU LYS LYS ASN LYS ARG PRO ASP ILE SEQRES 24 B 312 LYS LYS VAL GLN GLN LEU LEU GLN GLU MET THR ALA SER HET 0LI A 501 39 HET SO4 A 502 5 HET CO A 503 1 HET 0LI B 501 39 HET SO4 B 502 5 HET CO B 503 1 HET CO B 504 1 HET CO B 505 1 HETNAM 0LI 3-(IMIDAZO[1,2-B]PYRIDAZIN-3-YLETHYNYL)-4-METHYL-N-{4- HETNAM 2 0LI [(4-METHYLPIPERAZIN-1-YL)METHYL]-3-(TRIFLUOROMETHYL) HETNAM 3 0LI PHENYL}BENZAM IDE HETNAM SO4 SULFATE ION HETNAM CO COBALT (II) ION HETSYN 0LI PONATINIB FORMUL 3 0LI 2(C29 H27 F3 N6 O) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 CO 4(CO 2+) FORMUL 11 HOH *94(H2 O) HELIX 1 AA1 SER A 169 THR A 177 1 9 HELIX 2 AA2 PRO A 184 GLY A 188 5 5 HELIX 3 AA3 GLU A 224 CYS A 240 1 17 HELIX 4 AA4 SER A 269 SER A 275 1 7 HELIX 5 AA5 CYS A 276 THR A 280 5 5 HELIX 6 AA6 SER A 284 ASN A 305 1 22 HELIX 7 AA7 LYS A 313 ALA A 315 5 3 HELIX 8 AA8 THR A 351 MET A 355 5 5 HELIX 9 AA9 ALA A 356 ARG A 361 1 6 HELIX 10 AB1 THR A 365 GLY A 383 1 19 HELIX 11 AB2 LEU A 395 LEU A 397 5 3 HELIX 12 AB3 ASP A 398 ASP A 405 1 8 HELIX 13 AB4 THR A 409 ILE A 414 1 6 HELIX 14 AB5 ASP A 422 LEU A 437 1 16 HELIX 15 AB6 LYS A 440 ARG A 444 5 5 HELIX 16 AB7 ASP A 446 ALA A 459 1 14 HELIX 17 AB8 SER B 169 THR B 177 1 9 HELIX 18 AB9 PRO B 184 GLY B 188 5 5 HELIX 19 AC1 THR B 222 LYS B 239 1 18 HELIX 20 AC2 SER B 269 SER B 275 1 7 HELIX 21 AC3 CYS B 276 THR B 280 5 5 HELIX 22 AC4 SER B 284 ASN B 305 1 22 HELIX 23 AC5 LYS B 313 ALA B 315 5 3 HELIX 24 AC6 THR B 351 MET B 355 5 5 HELIX 25 AC7 ALA B 356 ARG B 361 1 6 HELIX 26 AC8 THR B 365 GLY B 383 1 19 HELIX 27 AC9 LEU B 395 LEU B 397 5 3 HELIX 28 AD1 ASP B 398 ASP B 405 1 8 HELIX 29 AD2 THR B 409 ILE B 414 5 6 HELIX 30 AD3 ASP B 422 LEU B 437 1 16 HELIX 31 AD4 LYS B 440 ARG B 444 5 5 HELIX 32 AD5 ASP B 446 ALA B 459 1 14 SHEET 1 AA1 6 HIS A 166 SER A 167 0 SHEET 2 AA1 6 LEU A 248 SER A 252 1 O LEU A 249 N HIS A 166 SHEET 3 AA1 6 CYS A 259 VAL A 263 -1 O VAL A 261 N GLY A 250 SHEET 4 AA1 6 THR A 208 LEU A 215 -1 N LYS A 213 O LEU A 260 SHEET 5 AA1 6 GLY A 198 VAL A 205 -1 N VAL A 199 O LYS A 214 SHEET 6 AA1 6 LYS A 191 GLU A 194 -1 N GLY A 193 O VAL A 200 SHEET 1 AA2 2 ILE A 317 LEU A 319 0 SHEET 2 AA2 2 ALA A 325 ILE A 327 -1 O LYS A 326 N LEU A 318 SHEET 1 AA3 6 HIS B 166 SER B 167 0 SHEET 2 AA3 6 LEU B 248 SER B 252 1 O LEU B 249 N HIS B 166 SHEET 3 AA3 6 LEU B 258 VAL B 263 -1 O VAL B 261 N GLY B 250 SHEET 4 AA3 6 THR B 208 LEU B 215 -1 N ALA B 211 O TYR B 262 SHEET 5 AA3 6 GLY B 198 VAL B 205 -1 N TYR B 201 O VAL B 212 SHEET 6 AA3 6 LYS B 191 GLY B 195 -1 N MET B 192 O VAL B 200 SHEET 1 AA4 2 ILE B 317 LEU B 319 0 SHEET 2 AA4 2 ALA B 325 ILE B 327 -1 O LYS B 326 N LEU B 318 LINK NE2 HIS A 390 CO CO A 503 1555 1555 2.42 LINK CO CO A 503 NZ LYS B 408 8445 1555 2.47 LINK NE2 HIS B 166 CO CO B 503 1555 1555 2.37 LINK NE2 HIS B 286 CO CO B 504 1555 1555 2.14 LINK NE2 HIS B 390 CO CO B 505 1555 1555 2.58 CISPEP 1 GLU A 392 PRO A 393 0 -0.12 CISPEP 2 ASP B 256 ASP B 257 0 -4.97 CISPEP 3 GLU B 392 PRO B 393 0 1.92 SITE 1 AC1 15 GLU A 233 VAL A 236 MET A 237 VAL A 246 SITE 2 AC1 15 TYR A 262 VAL A 263 TYR A 264 MET A 265 SITE 3 AC1 15 ILE A 308 HIS A 309 LEU A 318 ILE A 327 SITE 4 AC1 15 SER A 328 ASP A 329 PHE A 330 SITE 1 AC2 3 THR A 365 LYS A 367 LYS A 441 SITE 1 AC3 2 HIS A 390 LYS B 408 SITE 1 AC4 17 MET B 192 ALA B 211 GLU B 233 MET B 237 SITE 2 AC4 17 VAL B 246 TYR B 262 VAL B 263 TYR B 264 SITE 3 AC4 17 MET B 265 LEU B 302 ILE B 308 HIS B 309 SITE 4 AC4 17 LEU B 318 ILE B 327 SER B 328 ASP B 329 SITE 5 AC4 17 PHE B 330 SITE 1 AC5 3 THR B 365 LYS B 367 LYS B 441 SITE 1 AC6 1 HIS B 166 SITE 1 AC7 1 HIS B 286 SITE 1 AC8 2 LYS A 408 HIS B 390 CRYST1 85.037 85.037 434.301 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011760 0.006789 0.000000 0.00000 SCALE2 0.000000 0.013579 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002303 0.00000