HEADER TRANSFERASE/TRANSFERASE INHIBITOR 19-AUG-18 6EGD TITLE CRYSTAL STRUCTURE OF THE UNPHOSPHORYLATED IRAK4 KINASE DOMAIN BOUND TO TITLE 2 A TYPE I INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4; COMPND 3 CHAIN: D, A; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN RESIDUES 164-460; COMPND 5 SYNONYM: IRAK-4,RENAL CARCINOMA ANTIGEN NY-REN-64; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IRAK4; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS KINASE, UNPHOSPHORYLATED, INACTIVE, SIGNALING PROTEIN, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.FERRAO,H.WU REVDAT 4 13-MAR-24 6EGD 1 REMARK REVDAT 3 18-DEC-19 6EGD 1 REMARK REVDAT 2 28-AUG-19 6EGD 1 JRNL REVDAT 1 13-FEB-19 6EGD 0 JRNL AUTH L.WANG,R.FERRAO,Q.LI,J.M.HATCHER,H.G.CHOI,S.J.BUHRLAGE, JRNL AUTH 2 N.S.GRAY,H.WU JRNL TITL CONFORMATIONAL FLEXIBILITY AND INHIBITOR BINDING TO JRNL TITL 2 UNPHOSPHORYLATED INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4 JRNL TITL 3 (IRAK4). JRNL REF J.BIOL.CHEM. V. 294 4511 2019 JRNL REFN ESSN 1083-351X JRNL PMID 30679311 JRNL DOI 10.1074/JBC.RA118.005428 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 34382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3033 - 5.0588 0.99 2399 148 0.1789 0.1946 REMARK 3 2 5.0588 - 4.0162 1.00 2353 146 0.1426 0.1662 REMARK 3 3 4.0162 - 3.5087 1.00 2344 142 0.1611 0.2352 REMARK 3 4 3.5087 - 3.1880 1.00 2321 147 0.1812 0.2265 REMARK 3 5 3.1880 - 2.9596 1.00 2327 140 0.1965 0.2544 REMARK 3 6 2.9596 - 2.7851 1.00 2321 143 0.2122 0.2717 REMARK 3 7 2.7851 - 2.6456 0.99 2317 144 0.2010 0.2985 REMARK 3 8 2.6456 - 2.5305 0.99 2285 142 0.2040 0.2788 REMARK 3 9 2.5305 - 2.4331 0.99 2284 143 0.2082 0.2802 REMARK 3 10 2.4331 - 2.3491 0.99 2330 136 0.2105 0.2968 REMARK 3 11 2.3491 - 2.2757 0.99 2274 158 0.2150 0.2844 REMARK 3 12 2.2757 - 2.2106 0.99 2267 126 0.2274 0.3116 REMARK 3 13 2.2106 - 2.1524 0.99 2320 134 0.2408 0.2913 REMARK 3 14 2.1524 - 2.0999 0.98 2245 146 0.2464 0.3354 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4426 REMARK 3 ANGLE : 1.072 5962 REMARK 3 CHIRALITY : 0.039 659 REMARK 3 PLANARITY : 0.004 768 REMARK 3 DIHEDRAL : 15.853 1663 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 162 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0134 -21.8627 -5.1932 REMARK 3 T TENSOR REMARK 3 T11: 0.4873 T22: 0.3321 REMARK 3 T33: 0.3671 T12: -0.0142 REMARK 3 T13: -0.0881 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 7.0104 L22: 1.4103 REMARK 3 L33: 1.1446 L12: -1.5529 REMARK 3 L13: -0.8881 L23: 0.5896 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: 0.1385 S13: -0.3711 REMARK 3 S21: -0.3701 S22: -0.1361 S23: 0.1763 REMARK 3 S31: 0.1328 S32: -0.0226 S33: 0.0856 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 223 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4960 -14.8909 -9.2038 REMARK 3 T TENSOR REMARK 3 T11: 0.4412 T22: 0.3881 REMARK 3 T33: 0.2690 T12: 0.0282 REMARK 3 T13: -0.0074 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 2.8817 L22: 4.8824 REMARK 3 L33: 3.4305 L12: 0.8567 REMARK 3 L13: -0.7488 L23: -1.6412 REMARK 3 S TENSOR REMARK 3 S11: 0.0704 S12: 0.2417 S13: -0.2907 REMARK 3 S21: -0.2601 S22: -0.1633 S23: -0.0302 REMARK 3 S31: 0.5962 S32: 0.1166 S33: 0.1425 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 285 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1563 2.7281 -17.9742 REMARK 3 T TENSOR REMARK 3 T11: 0.2995 T22: 0.3226 REMARK 3 T33: 0.3050 T12: 0.0169 REMARK 3 T13: -0.0160 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 3.4037 L22: 3.9570 REMARK 3 L33: 4.7900 L12: 0.8932 REMARK 3 L13: -0.6359 L23: -0.5534 REMARK 3 S TENSOR REMARK 3 S11: -0.0469 S12: 0.2907 S13: 0.2846 REMARK 3 S21: -0.2846 S22: 0.1003 S23: 0.1943 REMARK 3 S31: 0.0047 S32: -0.0836 S33: -0.0094 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8601 -27.2076 -63.7582 REMARK 3 T TENSOR REMARK 3 T11: 0.4986 T22: 0.5991 REMARK 3 T33: 0.8068 T12: -0.2099 REMARK 3 T13: -0.0326 T23: -0.1096 REMARK 3 L TENSOR REMARK 3 L11: 6.3779 L22: 3.3828 REMARK 3 L33: 2.8967 L12: 0.6497 REMARK 3 L13: -1.0320 L23: 0.2422 REMARK 3 S TENSOR REMARK 3 S11: 0.2574 S12: 0.2310 S13: -1.0517 REMARK 3 S21: -0.0208 S22: -0.6467 S23: 0.5350 REMARK 3 S31: 0.5865 S32: -0.4328 S33: 0.5322 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1772 -17.3240 -58.3235 REMARK 3 T TENSOR REMARK 3 T11: 0.4564 T22: 0.5552 REMARK 3 T33: 0.8164 T12: -0.1661 REMARK 3 T13: 0.0607 T23: -0.0727 REMARK 3 L TENSOR REMARK 3 L11: 1.6070 L22: 4.7585 REMARK 3 L33: 2.4680 L12: -0.7906 REMARK 3 L13: -1.1378 L23: 1.7146 REMARK 3 S TENSOR REMARK 3 S11: -0.2049 S12: 0.0380 S13: -0.7303 REMARK 3 S21: 0.4962 S22: -0.4955 S23: 1.3346 REMARK 3 S31: 0.3463 S32: -0.6087 S33: 0.5202 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5097 -13.0175 -61.4066 REMARK 3 T TENSOR REMARK 3 T11: 0.3146 T22: 0.3545 REMARK 3 T33: 0.5181 T12: -0.0588 REMARK 3 T13: 0.0655 T23: -0.0626 REMARK 3 L TENSOR REMARK 3 L11: 3.2159 L22: 5.0491 REMARK 3 L33: 2.8762 L12: 1.8618 REMARK 3 L13: 0.1640 L23: 0.7266 REMARK 3 S TENSOR REMARK 3 S11: -0.0948 S12: -0.0041 S13: -0.4158 REMARK 3 S21: -0.0302 S22: -0.2312 S23: 0.4472 REMARK 3 S31: 0.0661 S32: -0.3031 S33: 0.2498 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1673 3.0743 -58.8318 REMARK 3 T TENSOR REMARK 3 T11: 0.4952 T22: 0.4015 REMARK 3 T33: 0.3174 T12: -0.0408 REMARK 3 T13: -0.0170 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 9.4872 L22: 4.2236 REMARK 3 L33: 3.8230 L12: -1.1770 REMARK 3 L13: -3.3997 L23: 0.3526 REMARK 3 S TENSOR REMARK 3 S11: 0.2492 S12: 0.8186 S13: 0.2672 REMARK 3 S21: -0.3697 S22: -0.0282 S23: 0.1995 REMARK 3 S31: -0.4027 S32: -0.4599 S33: -0.1907 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3071 -5.6720 -50.2156 REMARK 3 T TENSOR REMARK 3 T11: 0.3203 T22: 0.3691 REMARK 3 T33: 0.4043 T12: -0.0629 REMARK 3 T13: 0.0321 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 2.7539 L22: 3.4205 REMARK 3 L33: 4.9741 L12: -1.5484 REMARK 3 L13: -0.1967 L23: -0.3958 REMARK 3 S TENSOR REMARK 3 S11: -0.0419 S12: -0.1682 S13: -0.3880 REMARK 3 S21: 0.1765 S22: 0.1761 S23: 0.4125 REMARK 3 S31: -0.3716 S32: -0.3650 S33: -0.1148 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 366 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5475 -1.8546 -45.8528 REMARK 3 T TENSOR REMARK 3 T11: 0.4189 T22: 0.4617 REMARK 3 T33: 0.3680 T12: -0.0694 REMARK 3 T13: 0.0039 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.1367 L22: 6.1347 REMARK 3 L33: 7.1356 L12: -1.7907 REMARK 3 L13: -0.7069 L23: -1.0912 REMARK 3 S TENSOR REMARK 3 S11: -0.3090 S12: -0.4819 S13: -0.4307 REMARK 3 S21: 0.3361 S22: 0.0851 S23: -0.3935 REMARK 3 S31: -0.3883 S32: 0.6520 S33: 0.1226 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 396 THROUGH 413 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8709 7.0009 -41.7479 REMARK 3 T TENSOR REMARK 3 T11: 0.8661 T22: 0.7504 REMARK 3 T33: 0.5518 T12: -0.2099 REMARK 3 T13: -0.0964 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 9.5491 L22: 2.2313 REMARK 3 L33: 8.0369 L12: 1.6746 REMARK 3 L13: 0.7841 L23: 4.0090 REMARK 3 S TENSOR REMARK 3 S11: 0.2553 S12: -0.4917 S13: 1.0952 REMARK 3 S21: 1.0738 S22: -0.0517 S23: -0.3925 REMARK 3 S31: -1.2277 S32: 0.6960 S33: -0.3051 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 414 THROUGH 436 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4889 8.7665 -53.7757 REMARK 3 T TENSOR REMARK 3 T11: 0.6708 T22: 0.5412 REMARK 3 T33: 0.5587 T12: -0.2336 REMARK 3 T13: -0.0244 T23: -0.0593 REMARK 3 L TENSOR REMARK 3 L11: 4.0367 L22: 4.7402 REMARK 3 L33: 3.9072 L12: -1.5979 REMARK 3 L13: -1.6534 L23: 0.4872 REMARK 3 S TENSOR REMARK 3 S11: 0.0710 S12: -0.1260 S13: 0.7400 REMARK 3 S21: -0.0947 S22: 0.1278 S23: -0.7399 REMARK 3 S31: -1.1720 S32: 0.7901 S33: -0.1623 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 437 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1337 9.9320 -48.7868 REMARK 3 T TENSOR REMARK 3 T11: 0.5922 T22: 0.3647 REMARK 3 T33: 0.3659 T12: 0.0383 REMARK 3 T13: 0.0254 T23: -0.0480 REMARK 3 L TENSOR REMARK 3 L11: 6.6381 L22: 4.8220 REMARK 3 L33: 1.5850 L12: 0.2582 REMARK 3 L13: -1.7941 L23: -0.1490 REMARK 3 S TENSOR REMARK 3 S11: 0.0953 S12: -0.3276 S13: 0.4826 REMARK 3 S21: 0.4252 S22: 0.3663 S23: -0.0498 REMARK 3 S31: -1.2832 S32: -0.2207 S33: -0.4885 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EGD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34388 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 44.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.93000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 MM DL-MALIC ACID AND 20% PEG3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.75000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY D 159 REMARK 465 ALA D 160 REMARK 465 MET D 161 REMARK 465 ALA D 217 REMARK 465 MET D 218 REMARK 465 VAL D 219 REMARK 465 ASP D 220 REMARK 465 ILE D 221 REMARK 465 SER D 336 REMARK 465 GLU D 337 REMARK 465 LYS D 338 REMARK 465 PHE D 339 REMARK 465 ALA D 340 REMARK 465 GLN D 341 REMARK 465 THR D 342 REMARK 465 VAL D 343 REMARK 465 MET D 344 REMARK 465 THR D 345 REMARK 465 SER D 346 REMARK 465 ARG D 347 REMARK 465 ILE D 348 REMARK 465 VAL D 349 REMARK 465 GLY D 350 REMARK 465 THR D 351 REMARK 465 ALA D 459 REMARK 465 SER D 460 REMARK 465 GLY A 159 REMARK 465 ALA A 160 REMARK 465 MET A 161 REMARK 465 GLY A 162 REMARK 465 SER A 163 REMARK 465 ARG A 164 REMARK 465 GLY A 196 REMARK 465 PHE A 197 REMARK 465 ALA A 217 REMARK 465 MET A 218 REMARK 465 VAL A 219 REMARK 465 ASP A 220 REMARK 465 ILE A 221 REMARK 465 ASP A 254 REMARK 465 GLY A 255 REMARK 465 ASP A 256 REMARK 465 SER A 336 REMARK 465 GLU A 337 REMARK 465 LYS A 338 REMARK 465 PHE A 339 REMARK 465 ALA A 340 REMARK 465 GLN A 341 REMARK 465 THR A 342 REMARK 465 VAL A 343 REMARK 465 MET A 344 REMARK 465 THR A 345 REMARK 465 SER A 346 REMARK 465 ARG A 347 REMARK 465 ILE A 348 REMARK 465 VAL A 349 REMARK 465 GLY A 350 REMARK 465 THR A 351 REMARK 465 ALA A 459 REMARK 465 SER A 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N PHE D 197 O HOH D 601 1.92 REMARK 500 O THR A 458 O HOH A 601 1.97 REMARK 500 O LYS D 408 O HOH D 602 1.98 REMARK 500 O ALA A 335 O HOH A 602 1.99 REMARK 500 O HOH D 629 O HOH D 653 2.01 REMARK 500 N THR D 352 O HOH D 603 2.03 REMARK 500 O HOH A 627 O HOH A 655 2.11 REMARK 500 O ALA A 216 O HOH A 603 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN D 311 40.03 -144.74 REMARK 500 ASP D 329 69.57 62.28 REMARK 500 ASP A 181 103.78 -55.58 REMARK 500 SER A 186 4.19 -68.28 REMARK 500 ASN A 206 -121.57 57.75 REMARK 500 ASN A 311 43.80 -148.47 REMARK 500 ASP A 329 75.05 62.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 671 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 672 DISTANCE = 5.88 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J87 D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J87 A 501 DBREF 6EGD D 164 460 UNP Q9NWZ3 IRAK4_HUMAN 164 460 DBREF 6EGD A 164 460 UNP Q9NWZ3 IRAK4_HUMAN 164 460 SEQADV 6EGD GLY D 159 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGD ALA D 160 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGD MET D 161 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGD GLY D 162 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGD SER D 163 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGD ASN D 311 UNP Q9NWZ3 ASP 311 CONFLICT SEQADV 6EGD GLY A 159 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGD ALA A 160 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGD MET A 161 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGD GLY A 162 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGD SER A 163 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGD ASN A 311 UNP Q9NWZ3 ASP 311 CONFLICT SEQRES 1 D 302 GLY ALA MET GLY SER ARG PHE HIS SER PHE SER PHE TYR SEQRES 2 D 302 GLU LEU LYS ASN VAL THR ASN ASN PHE ASP GLU ARG PRO SEQRES 3 D 302 ILE SER VAL GLY GLY ASN LYS MET GLY GLU GLY GLY PHE SEQRES 4 D 302 GLY VAL VAL TYR LYS GLY TYR VAL ASN ASN THR THR VAL SEQRES 5 D 302 ALA VAL LYS LYS LEU ALA ALA MET VAL ASP ILE THR THR SEQRES 6 D 302 GLU GLU LEU LYS GLN GLN PHE ASP GLN GLU ILE LYS VAL SEQRES 7 D 302 MET ALA LYS CYS GLN HIS GLU ASN LEU VAL GLU LEU LEU SEQRES 8 D 302 GLY PHE SER SER ASP GLY ASP ASP LEU CYS LEU VAL TYR SEQRES 9 D 302 VAL TYR MET PRO ASN GLY SER LEU LEU ASP ARG LEU SER SEQRES 10 D 302 CYS LEU ASP GLY THR PRO PRO LEU SER TRP HIS MET ARG SEQRES 11 D 302 CYS LYS ILE ALA GLN GLY ALA ALA ASN GLY ILE ASN PHE SEQRES 12 D 302 LEU HIS GLU ASN HIS HIS ILE HIS ARG ASN ILE LYS SER SEQRES 13 D 302 ALA ASN ILE LEU LEU ASP GLU ALA PHE THR ALA LYS ILE SEQRES 14 D 302 SER ASP PHE GLY LEU ALA ARG ALA SER GLU LYS PHE ALA SEQRES 15 D 302 GLN THR VAL MET THR SER ARG ILE VAL GLY THR THR ALA SEQRES 16 D 302 TYR MET ALA PRO GLU ALA LEU ARG GLY GLU ILE THR PRO SEQRES 17 D 302 LYS SER ASP ILE TYR SER PHE GLY VAL VAL LEU LEU GLU SEQRES 18 D 302 ILE ILE THR GLY LEU PRO ALA VAL ASP GLU HIS ARG GLU SEQRES 19 D 302 PRO GLN LEU LEU LEU ASP ILE LYS GLU GLU ILE GLU ASP SEQRES 20 D 302 GLU GLU LYS THR ILE GLU ASP TYR ILE ASP LYS LYS MET SEQRES 21 D 302 ASN ASP ALA ASP SER THR SER VAL GLU ALA MET TYR SER SEQRES 22 D 302 VAL ALA SER GLN CYS LEU HIS GLU LYS LYS ASN LYS ARG SEQRES 23 D 302 PRO ASP ILE LYS LYS VAL GLN GLN LEU LEU GLN GLU MET SEQRES 24 D 302 THR ALA SER SEQRES 1 A 302 GLY ALA MET GLY SER ARG PHE HIS SER PHE SER PHE TYR SEQRES 2 A 302 GLU LEU LYS ASN VAL THR ASN ASN PHE ASP GLU ARG PRO SEQRES 3 A 302 ILE SER VAL GLY GLY ASN LYS MET GLY GLU GLY GLY PHE SEQRES 4 A 302 GLY VAL VAL TYR LYS GLY TYR VAL ASN ASN THR THR VAL SEQRES 5 A 302 ALA VAL LYS LYS LEU ALA ALA MET VAL ASP ILE THR THR SEQRES 6 A 302 GLU GLU LEU LYS GLN GLN PHE ASP GLN GLU ILE LYS VAL SEQRES 7 A 302 MET ALA LYS CYS GLN HIS GLU ASN LEU VAL GLU LEU LEU SEQRES 8 A 302 GLY PHE SER SER ASP GLY ASP ASP LEU CYS LEU VAL TYR SEQRES 9 A 302 VAL TYR MET PRO ASN GLY SER LEU LEU ASP ARG LEU SER SEQRES 10 A 302 CYS LEU ASP GLY THR PRO PRO LEU SER TRP HIS MET ARG SEQRES 11 A 302 CYS LYS ILE ALA GLN GLY ALA ALA ASN GLY ILE ASN PHE SEQRES 12 A 302 LEU HIS GLU ASN HIS HIS ILE HIS ARG ASN ILE LYS SER SEQRES 13 A 302 ALA ASN ILE LEU LEU ASP GLU ALA PHE THR ALA LYS ILE SEQRES 14 A 302 SER ASP PHE GLY LEU ALA ARG ALA SER GLU LYS PHE ALA SEQRES 15 A 302 GLN THR VAL MET THR SER ARG ILE VAL GLY THR THR ALA SEQRES 16 A 302 TYR MET ALA PRO GLU ALA LEU ARG GLY GLU ILE THR PRO SEQRES 17 A 302 LYS SER ASP ILE TYR SER PHE GLY VAL VAL LEU LEU GLU SEQRES 18 A 302 ILE ILE THR GLY LEU PRO ALA VAL ASP GLU HIS ARG GLU SEQRES 19 A 302 PRO GLN LEU LEU LEU ASP ILE LYS GLU GLU ILE GLU ASP SEQRES 20 A 302 GLU GLU LYS THR ILE GLU ASP TYR ILE ASP LYS LYS MET SEQRES 21 A 302 ASN ASP ALA ASP SER THR SER VAL GLU ALA MET TYR SER SEQRES 22 A 302 VAL ALA SER GLN CYS LEU HIS GLU LYS LYS ASN LYS ARG SEQRES 23 A 302 PRO ASP ILE LYS LYS VAL GLN GLN LEU LEU GLN GLU MET SEQRES 24 A 302 THR ALA SER HET J87 D 501 48 HET J87 A 501 48 HETNAM J87 N-[2-METHOXY-4-(MORPHOLIN-4-YL)PHENYL]-2-(PYRIDIN-3- HETNAM 2 J87 YL)-1,3-THIAZOLE-5-CARBOXAMIDE FORMUL 3 J87 2(C20 H20 N4 O3 S) FORMUL 5 HOH *143(H2 O) HELIX 1 AA1 SER D 169 THR D 177 1 9 HELIX 2 AA2 PRO D 184 GLY D 188 5 5 HELIX 3 AA3 THR D 223 CYS D 240 1 18 HELIX 4 AA4 SER D 269 SER D 275 1 7 HELIX 5 AA5 CYS D 276 THR D 280 5 5 HELIX 6 AA6 SER D 284 ASN D 305 1 22 HELIX 7 AA7 LYS D 313 ALA D 315 5 3 HELIX 8 AA8 ALA D 356 ARG D 361 1 6 HELIX 9 AA9 THR D 365 GLY D 383 1 19 HELIX 10 AB1 LEU D 395 LEU D 397 5 3 HELIX 11 AB2 ASP D 398 ASP D 405 1 8 HELIX 12 AB3 THR D 409 ILE D 414 1 6 HELIX 13 AB4 ASP D 422 LEU D 437 1 16 HELIX 14 AB5 LYS D 440 ARG D 444 5 5 HELIX 15 AB6 ASP D 446 THR D 458 1 13 HELIX 16 AB7 SER A 169 THR A 177 1 9 HELIX 17 AB8 PRO A 184 GLY A 188 5 5 HELIX 18 AB9 THR A 223 CYS A 240 1 18 HELIX 19 AC1 SER A 269 SER A 275 1 7 HELIX 20 AC2 CYS A 276 THR A 280 5 5 HELIX 21 AC3 SER A 284 ASN A 305 1 22 HELIX 22 AC4 LYS A 313 ALA A 315 5 3 HELIX 23 AC5 ALA A 356 ARG A 361 1 6 HELIX 24 AC6 THR A 365 GLY A 383 1 19 HELIX 25 AC7 LEU A 395 LEU A 397 5 3 HELIX 26 AC8 ASP A 398 ASP A 405 1 8 HELIX 27 AC9 THR A 409 ILE A 414 1 6 HELIX 28 AD1 ASP A 422 LEU A 437 1 16 HELIX 29 AD2 LYS A 440 ARG A 444 5 5 HELIX 30 AD3 ASP A 446 THR A 458 1 13 SHEET 1 AA1 6 HIS D 166 SER D 167 0 SHEET 2 AA1 6 LEU D 248 SER D 252 1 O PHE D 251 N HIS D 166 SHEET 3 AA1 6 CYS D 259 VAL D 263 -1 O VAL D 261 N LEU D 249 SHEET 4 AA1 6 THR D 208 LEU D 215 -1 N LYS D 213 O LEU D 260 SHEET 5 AA1 6 GLY D 198 VAL D 205 -1 N TYR D 201 O VAL D 212 SHEET 6 AA1 6 LYS D 191 GLU D 194 -1 N GLY D 193 O VAL D 200 SHEET 1 AA2 2 ILE D 317 LEU D 319 0 SHEET 2 AA2 2 ALA D 325 ILE D 327 -1 O LYS D 326 N LEU D 318 SHEET 1 AA3 6 HIS A 166 SER A 167 0 SHEET 2 AA3 6 LEU A 248 SER A 252 1 O LEU A 249 N HIS A 166 SHEET 3 AA3 6 CYS A 259 VAL A 263 -1 O VAL A 261 N GLY A 250 SHEET 4 AA3 6 THR A 208 LYS A 214 -1 N ALA A 211 O TYR A 262 SHEET 5 AA3 6 VAL A 199 VAL A 205 -1 N TYR A 201 O VAL A 212 SHEET 6 AA3 6 LYS A 191 GLY A 193 -1 N MET A 192 O VAL A 200 SHEET 1 AA4 2 ILE A 317 LEU A 319 0 SHEET 2 AA4 2 ALA A 325 ILE A 327 -1 O LYS A 326 N LEU A 318 CISPEP 1 GLU D 392 PRO D 393 0 -0.11 CISPEP 2 GLU A 392 PRO A 393 0 -0.01 SITE 1 AC1 12 MET D 192 ALA D 211 LYS D 213 TYR D 262 SITE 2 AC1 12 VAL D 263 TYR D 264 MET D 265 GLY D 268 SITE 3 AC1 12 ASP D 272 LEU D 318 SER D 328 HOH D 609 SITE 1 AC2 13 MET A 192 ALA A 211 LYS A 213 TYR A 262 SITE 2 AC2 13 VAL A 263 TYR A 264 MET A 265 PRO A 266 SITE 3 AC2 13 GLY A 268 LEU A 318 SER A 328 ASP A 329 SITE 4 AC2 13 HOH A 616 CRYST1 71.450 59.500 75.620 90.00 111.81 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013996 0.000000 0.005600 0.00000 SCALE2 0.000000 0.016807 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014243 0.00000